View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21643_high_7 (Length: 479)
Name: NF21643_high_7
Description: NF21643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21643_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Complemental strand, 2782051 - 2781589
Alignment:
| Q |
1 |
tataaatcattgcgccgtggttctgctaatatggatgtgctgatagcactgggaacaaatgcagcttatttctactctgtttattctgttttgagagctg |
100 |
Q |
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| T |
2782051 |
tataaatcattgcgccgtggttctgctaatatggatgtgctgatagcactgggaacaaatgcagcttatttctattctgtttattctgttttgagagctg |
2781952 |
T |
|
| Q |
101 |
ctacttctaaggtttttgaaggtactgatttctttgagactagtgcgatgcttatttcgtttattctattaggaaagtatcttgaggttttagctaaggg |
200 |
Q |
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| T |
2781951 |
ctacttctaaggtttttgaaggtactgatttctttgagactagtgcgatgcttatttcgtttattctattaggaaagtatcttgaggttttagctaaggg |
2781852 |
T |
|
| Q |
201 |
gaaaacatcaaatgcaattgcaaagttaatgaatttgacacctgatactgctatattgttgagtttggatggtgaagggaatgttgttggggaggaagaa |
300 |
Q |
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| T |
2781851 |
gaaaacatcaaatgcaattgcaaagttaatgaatttgacacctgatactgctatattgttgagtttggatggtgaagggaatgttgttggggaggaagaa |
2781752 |
T |
|
| Q |
301 |
attgatagtaggttggttcagaagaatgatgtgattaagattattccgggtgcaaaagttgcttctgatgggctcgttgtttgggggcagagtcatgtga |
400 |
Q |
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| T |
2781751 |
attgatagtaggttggttcagaagaatgatgtgattaagattattccgggtgcaaaagttgcttctgatgggctcgttgtttgggggcagagtcatgtga |
2781652 |
T |
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| Q |
401 |
atgagagtatgataacaggtgaggcacgtcccgtgtctaagaggaaagatgatactgttattg |
463 |
Q |
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| T |
2781651 |
atgagagtatgataacaggtgaggcacgtcccgtgtctaagaggaaagatgatactgttattg |
2781589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 297 - 426
Target Start/End: Original strand, 33918560 - 33918689
Alignment:
| Q |
297 |
agaaattgatagtaggttggttcagaagaatgatgtgattaagattattccgggtgcaaaagttgcttctgatgggctcgttgtttgggggcagagtcat |
396 |
Q |
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|||||||||||| |||||| | ||||||||||||||||| || || | ||||| || ||||| || || ||||| | ||||||||||| || |||||| |
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| T |
33918560 |
agaaattgatagcaggttgatacagaagaatgatgtgatcaaagttgtgccgggcgcgaaagtagcatcagatggttttgttgtttggggacaaagtcat |
33918659 |
T |
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| Q |
397 |
gtgaatgagagtatgataacaggtgaggca |
426 |
Q |
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| T |
33918660 |
gtaaatgagagtatgataactggtgaggca |
33918689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 297 - 426
Target Start/End: Original strand, 33901034 - 33901163
Alignment:
| Q |
297 |
agaaattgatagtaggttggttcagaagaatgatgtgattaagattattccgggtgcaaaagttgcttctgatgggctcgttgtttgggggcagagtcat |
396 |
Q |
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|||||||||||| |||||| | ||||||||||||||||| || || | ||||| | ||||| || || ||||| | ||||||||||| || |||||| |
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| T |
33901034 |
agaaattgatagcaggttgatacagaagaatgatgtgatcaaagttgtgccgggcacgaaagtagcatcggatggttttgttgtttggggacaaagtcat |
33901133 |
T |
|
| Q |
397 |
gtgaatgagagtatgataacaggtgaggca |
426 |
Q |
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|| ||||||||||||||||| ||||||||| |
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| T |
33901134 |
gtaaatgagagtatgataactggtgaggca |
33901163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 33900765 - 33900818
Alignment:
| Q |
31 |
atggatgtgctgatagcactgggaacaaatgcagcttatttctactctgtttat |
84 |
Q |
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|||||| || |||||||| | ||||||||||||||||||||||| ||||||||| |
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| T |
33900765 |
atggatttgttgatagcattaggaacaaatgcagcttatttctattctgtttat |
33900818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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