View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21643_low_1 (Length: 849)
Name: NF21643_low_1
Description: NF21643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21643_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 771; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 771; E-Value: 0
Query Start/End: Original strand, 19 - 836
Target Start/End: Complemental strand, 49085834 - 49085016
Alignment:
| Q |
19 |
aatgagtcaatataattaacaaacaagccgacagaaagcactaaaaatgctattaaaaacaatttgatttcactagacctacactacagttaaccattgt |
118 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49085834 |
aatgagtcaatgtaattaacaaacaagccgacagaaagcactaaaaatgctattaaaaacaatttgatttcactagacctacactacagttaaccattgt |
49085735 |
T |
|
| Q |
119 |
tgagtcaaattagtgttcaagtcagactgtaaatcaataatgaaggtaacttgaaacaaaacaatctcagtagcctctggtttcagctactggaacttca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
49085734 |
tgagtcaaattagtgttcaagtcagactgtaaatcaataatgaaggtaacttgaaacaaaacaatctcagtagcctctggtttcagctaccggaacttca |
49085635 |
T |
|
| Q |
219 |
ccctgtacttggcgaacaaactgccctttcacccgggggcggttctctgcctgtctttttcggctttcatatcggacctgtaaaataaatttgaccaatg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
49085634 |
ccctgtacttggcgaacaaactgccctttcacccgggggcggttctctgcctgtctttttcggctttcatatcggacctgtaaaataaatttgagcaatg |
49085535 |
T |
|
| Q |
319 |
agcatctgaaatatctttaataatgtcagcctagacatgtttgagattactaaaac-acacagtaggagtttccaaacttactaaaaacactaataccat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
49085534 |
agcatctgaaatatctttaataatgtcagcctagacatgtttgagattactaaaaccacacagtaggagtttccaaacttactaaaaacactgataccat |
49085435 |
T |
|
| Q |
418 |
attgataaatcaactcaaattgttccctatgataaaaatatttctagagtggttcttctcaaaagtagtgatagcatggtggttgtagtacctttttgtc |
517 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
49085434 |
attgataaatcaactcaaattgttccctatgacaaaaatatttctagagtggttcttctcaaaagtagtgatagcatggtggttgcagtacctttttgtc |
49085335 |
T |
|
| Q |
518 |
atagcatctgtcttttcgcttcagtcgaaactttgttagagctgcttctctttggctagtgcgatgagaactcgtgtctctaagcccgtcgtggtgatcg |
617 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
49085334 |
atagcatctgtcttttcgcttcagtcgaaactttgttagagctgcttctctttggctagtgcgatgagaactcgtgtctctaagcccgtcatggtgatcg |
49085235 |
T |
|
| Q |
618 |
ttattcatagaactttcaaggttgttcttgcctacaatagttgaaggggcatttccatcacttacgctgcctaggccttcacacacaccactggcgttat |
717 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49085234 |
ttattcatagaactttcaaggttgttcttgcctacaatagttgaaggggcatttccatcacttacgctgcctaggccttcacacacaccactggcgttat |
49085135 |
T |
|
| Q |
718 |
gactctccgcgtcatggtaaaaactggtacaactttgaatattagatggagagtcatgcatagcaaaatcattattgctttgatcacaagtataggtggc |
817 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49085134 |
gactctccgcgtcatggtaaaaactggtacaactttgaccattagatggagattcatgcatagcaaaatcattattgctttgatcacaagtataggtggc |
49085035 |
T |
|
| Q |
818 |
atcatccgaccagtgatga |
836 |
Q |
| |
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||||||||||||||||||| |
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| T |
49085034 |
atcatccgaccagtgatga |
49085016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 503 - 587
Target Start/End: Original strand, 8896805 - 8896889
Alignment:
| Q |
503 |
tagtacctttttgtcatagcatctgtcttttcgcttcagtcgaaactttgttagagctgcttctctttggctagtgcgatgagaa |
587 |
Q |
| |
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|||||||||||| || ||||||| ||||||||||| | |||||||||||||||||||||||||||||| | || |||||||||| |
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| T |
8896805 |
tagtacctttttctcgaagcatctctcttttcgctttaatcgaaactttgttagagctgcttctctttgacgagagcgatgagaa |
8896889 |
T |
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