View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21643_low_10 (Length: 468)
Name: NF21643_low_10
Description: NF21643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21643_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-156; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 16 - 374
Target Start/End: Complemental strand, 2666566 - 2666222
Alignment:
| Q |
16 |
atatgttggtagcagttttctagtacttattttgctgaacacttaccaagacataagatttttatcccacaaaaagctgttatttatattaacaaaaaat |
115 |
Q |
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| T |
2666566 |
atatgttggtagcagttttctagtacttattttgctgaatacttactaagacataagatttttatcccacaaaaagctgttatgtatattaacaaaaaat |
2666467 |
T |
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| Q |
116 |
attgtgtaacatgtatcatttacattcaagatgataaatcttcccctcaaaagatgataaatcttgagcaagaaaatggaagaattaggttgaatgaatg |
215 |
Q |
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| T |
2666466 |
attgtgta--------------cattcaagatgataaatcttcccctcaaaagatgataaatcttgagcaaaaaaatggaagaattaggttgagtgaatg |
2666381 |
T |
|
| Q |
216 |
aaaaatatacagatagaaattgtgaatgatatttattgtacctcagttctgcccatggtttcaccagctttgtaactttggtcgtgggatgccatttttc |
315 |
Q |
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| T |
2666380 |
aaaaatatagagatagaaattgtgaatgatatttattgtacctcagttctgcccatggtttcaccagctttgtaactttggtcgtgggaagccatttttc |
2666281 |
T |
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| Q |
316 |
tttttcaaattgaattagcaggtttactcgctagaatctttcctcttatggttatctca |
374 |
Q |
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| T |
2666280 |
tttttcaaattgaaatagcaggtttactcgctagaatctttcctcttatggttatctca |
2666222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 236 - 325
Target Start/End: Complemental strand, 2681769 - 2681679
Alignment:
| Q |
236 |
tgtgaatgatattta-ttgtacctcagttctgcccatggtttcaccagctttgtaactttggtcgtgggatgccatttttctttttcaaat |
325 |
Q |
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| T |
2681769 |
tgtgaatgatattttgttatacctcagttcggcccatggtttcaccagctttgtagctctgattgtgggatgccatctttcttcttcaaat |
2681679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 414 - 451
Target Start/End: Complemental strand, 2666181 - 2666144
Alignment:
| Q |
414 |
atgttctatttatagtatttcatgagtcatgtatgata |
451 |
Q |
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| T |
2666181 |
atgttctatttatagtatttcatgagtcatgtatgata |
2666144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 325
Target Start/End: Complemental strand, 2675439 - 2675368
Alignment:
| Q |
254 |
tacctcagttctgcccatggtttcaccagctttgtaactttggtcgtgggatgccatttttctttttcaaat |
325 |
Q |
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| T |
2675439 |
tacctcagttcgacccatggtctcaccagctttgaagctctgatcttgggatgccatctttcttcttcaaat |
2675368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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