View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21643_low_11 (Length: 412)
Name: NF21643_low_11
Description: NF21643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21643_low_11 |
 | |
|
| [»] chr7 (3 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 157 - 412
Target Start/End: Original strand, 10193160 - 10193415
Alignment:
| Q |
157 |
acacggattggaaatttgacagaatatttaccaagcctaccggccatgtcagcacgctaaagtcaacactccaacagtttggaatcatattaactaagct |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10193160 |
acacggattggaaatttgacagaatatttaccaagcctaccggccatgtcagcacgctaaagtcaacactccaacagtttggaatcatattaactaagct |
10193259 |
T |
|
| Q |
257 |
tattccactaacttgatcagttagttaagtacaccctcagtggtgtagaccacacatagcttaccaaaaaccatgtaactaaaaattgacttgttaagta |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10193260 |
tattccactaacttgatcagttagttaagtacaccctcagtggtgtagaccacacatagcttaccaaaagccatgtaactaaaaattgacttgttaagta |
10193359 |
T |
|
| Q |
357 |
cacgaagcttgtgtgcagcttaactggtcaaccctaaaaattgacttttaaggtga |
412 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10193360 |
catgaagcttgtgtgcagcttaactggtcaaccctaaaaattgacttgtaaggtga |
10193415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 10192886 - 10192965
Alignment:
| Q |
79 |
agctagagcaaaatgaaggagttgaattctttgaatgagaaaatggtgaagttggccattcaaagcatagtagggcttac |
158 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10192886 |
agctagagcaaaatgaaggagttgagttctttgaatgagaaaatggtgaagttggccattcaaagcatagtagggcttac |
10192965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 10192569 - 10192506
Alignment:
| Q |
1 |
cccaaatctgttttacatttctttttctgtattttacatatctgttctcactattttagtttgg |
64 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10192569 |
cccaaatctgttttacatttctttttctgtattttacatatctgttctctctattttagtttgg |
10192506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 19461084 - 19461143
Alignment:
| Q |
3 |
caaatctgttttacatttctttttctgtattttacatatctgttctcactattttagttt |
62 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| | | ||||| |||||||||||| |
|
|
| T |
19461084 |
caaatctgttttacatttcttttcctgtattttacatttattttctctctattttagttt |
19461143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 19460668 - 19460615
Alignment:
| Q |
105 |
ttctttgaatgagaaaatggtgaagttggccattcaaagcatagtagggcttac |
158 |
Q |
| |
|
|||||||||||||| |||||||||||| | |||||||||||| ||||||||||| |
|
|
| T |
19460668 |
ttctttgaatgagagaatggtgaagttagacattcaaagcatggtagggcttac |
19460615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 412
Target Start/End: Complemental strand, 19459820 - 19459788
Alignment:
| Q |
380 |
ctggtcaaccctaaaaattgacttttaaggtga |
412 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
19459820 |
ctggtcaaccctaaaaattgacttgtaaggtga |
19459788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University