View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21643_low_13 (Length: 399)
Name: NF21643_low_13
Description: NF21643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21643_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 19977953 - 19977571
Alignment:
| Q |
1 |
ataacagcagccaagaaattagcaatggtgtagtcaagataggtgtgttgaggaagacgacctctcctttccaatagattcatcacagcaggccatgtcc |
100 |
Q |
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| T |
19977953 |
ataacagcagccaagaaattagcaatggtgtagtcaagataggtgtgttgaggaagacgacctctcctttccaatagattcatcacagcaggccatgtcc |
19977854 |
T |
|
| Q |
101 |
ccaaaaagaacaagctaaacaacatgcatactattgcaccacccttgctctccaccagatacatttttcaacttattactccaaaatgctatcacatgtc |
200 |
Q |
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| T |
19977853 |
ccaaaaagaacaggctaaacaacatgcatactatggcaccacccttgctctccaccagatacatttttcaacttattactccaaaatgctatcacatgtc |
19977754 |
T |
|
| Q |
201 |
actacaaataaacacaatgaagatatatgtaaaccatctactaaaggaactaattgttgggtgggttccgggcatcatcaaatcggtcttgaacaatcat |
300 |
Q |
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||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
19977753 |
actacaaataaacacaatgaagatatatgtataccatctaccaaaggaactaattgttgggtgggttccgagcatcatcaaattagtcttgaacaatcat |
19977654 |
T |
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| Q |
301 |
acaactgagttggactggacattacattttaacctaaaacgtgttaggtttatcctctcacttgtaaagtattcaaccatatt |
383 |
Q |
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| T |
19977653 |
acaactgagttggactggacactacattttaacctaaaacgtgttaggtttatcctctcacttgtaaagtgttcaaccatatt |
19977571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 19620567 - 19620395
Alignment:
| Q |
1 |
ataacagcagccaagaaattagcaatggtgtagtcaagataggtgtgttgaggaagacgacctctcctttccaatagattcatcacagcaggccatgtcc |
100 |
Q |
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|||||||| ||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||| |||||||||| |
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| T |
19620567 |
ataacagccgccaagagattagtgatggtgtagtcaagataggtgtgctgaggaagacgacctctcctttccaataaagtcatcacagctggccatgtcc |
19620468 |
T |
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| Q |
101 |
ccaaaaagaacaagctaaacaacatgcatactattgcaccacccttgctctccaccagatacatttttcaact |
173 |
Q |
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| || ||||||||| || || |||||||||||| ||||| ||| ||||||| |||| ||||||||||||||| |
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| T |
19620467 |
ctaagaagaacaaggaaaccagcatgcatactatggcacctcccctgctctctaccatatacatttttcaact |
19620395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 19975285 - 19975451
Alignment:
| Q |
1 |
ataacagcagccaagaaattagcaatggtgtagtcaagataggtgtgttgaggaagacgacctctcctttccaatagattcatcacagcaggccatgtcc |
100 |
Q |
| |
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|||| ||||||||||||||||| || | ||| || || ||||| |||||||||||||| |||| |||||| || ||| ||| |||||||||||||||| |
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| T |
19975285 |
ataatagcagccaagaaattagtgattgagtaatcgaggtaggtatgttgaggaagacggcctcgcctttctaacagagtcaaaacagcaggccatgtcc |
19975384 |
T |
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| Q |
101 |
ccaaaaagaaca-agctaaacaacatgcatactattgcaccacccttgctctccaccagatacatttt |
167 |
Q |
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| || ||||| | ||| |||| ||| || |||| ||||| |||||||||||||||| ||||||||| |
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| T |
19975385 |
ctaagaagaaaagagc-caacagcatacaccctatggcacctcccttgctctccaccaaatacatttt |
19975451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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