View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21643_low_14 (Length: 332)
Name: NF21643_low_14
Description: NF21643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21643_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 20 - 326
Target Start/End: Original strand, 30075965 - 30076270
Alignment:
| Q |
20 |
taaaattaatttcattattgtgtaatatgaaccattcaatctcataataacagatgagatcgtttatcacatcggcagaagaatgaactgatattgaaaa |
119 |
Q |
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| T |
30075965 |
taaaattaatttcattattgtgtaatatgaaccattcaatctcataataacagatgagatcgtttatcacatcggcagaagaatcaactgatattgaaaa |
30076064 |
T |
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| Q |
120 |
caagtagtctgcaaatcacaacaaacaaatgggtctatgagtggggnnnnnnnnnnnnnnnnnngttgtaccttgttcccaaagaaactgaggcaaagag |
219 |
Q |
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| T |
30076065 |
caagtggtctgcaaatcacaacaaacaaatgggtccatgagtggggaaaaagtaaaacaaaaaagttgtaccttgttcccaaagaaactgagccaaagag |
30076164 |
T |
|
| Q |
220 |
gaaaacaaatacaaccaaaatcctattaaacaggatcaagaggaataagaataatggcttcaacaaggaatcatacttgtgtgggtcaaattactattga |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
30076165 |
gaaaacaaatacaaccaaaatcctattaaacaggatcaagaggaataagaataatggcttcaacaa-gaatcatacttgtgtggctcaaattactattga |
30076263 |
T |
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| Q |
320 |
cttcata |
326 |
Q |
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||||||| |
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| T |
30076264 |
cttcata |
30076270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 43597172 - 43597144
Alignment:
| Q |
1 |
ctaaaaccatattttagcctaaaattaat |
29 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
43597172 |
ctaaaaccatattttagcctaaaattaat |
43597144 |
T |
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