View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21643_low_16 (Length: 314)
Name: NF21643_low_16
Description: NF21643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21643_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 17 - 309
Target Start/End: Complemental strand, 29765739 - 29765447
Alignment:
| Q |
17 |
tcacatttgcaatacaaattcccttaaaagggtcattagagattccttgaaacctagctgctatggtaacattctcagccacaacatctctatagttgat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29765739 |
tcacatttgcaatacaaattcccttaaaagggtcattagagattccttgaaacctagctgctatggtaacattctcagccacaacatctctatagttgat |
29765640 |
T |
|
| Q |
117 |
atttgcaatctcaggcaaagcattagggtcaaagttagtatcagcatgtgaattataatcacctgtcatcttaaatgcccatttcatagtatgcatggta |
216 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29765639 |
atttgcaatctcaggcaaagcattagggtcaaagtgagtatcagcatgtgaattataatcacctgtcatcttaaatgcccatttcatagtatgcatggta |
29765540 |
T |
|
| Q |
217 |
aatctttttacatatatgtccttcacataccctcctctaccaacagctgttttgattctgacacctgattctgttcgaatggctgtgatgtct |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29765539 |
aatctttttacatatatgtccttcacataccctcctctaccaacagctgttttgattctgacacctgattctgttcgaatggctgtgatgtct |
29765447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 290
Target Start/End: Original strand, 34504765 - 34504823
Alignment:
| Q |
232 |
atgtccttcacataccctcctctaccaacagctgttttgattctgacacctgattctgt |
290 |
Q |
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|||||||||||||| || |||||||| || |||| ||||||||| ||| |||||||||| |
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| T |
34504765 |
atgtccttcacatatccgcctctaccgacggctgatttgattctaacagctgattctgt |
34504823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 17 - 308
Target Start/End: Original strand, 11061571 - 11061862
Alignment:
| Q |
17 |
tcacatttgcaatacaaattcccttaaaagggtcattagagattccttgaaacctagctgctatggtaacattctcagccacaacatctctatagttgat |
116 |
Q |
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||||||| | ||| |||||||| |||||||||||||||| ||||||| || || | || ||| | ||||| ||||| || | |||||||||| ||| |
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| T |
11061571 |
tcacattggaaatgcaaattccagtaaaagggtcattagaaattccttccaaattaccagccatgctcacattatcagctaccatgtctctatagtggat |
11061670 |
T |
|
| Q |
117 |
atttgcaatctcaggcaaagcattagggtcaaagttagtatcagcatgtgaattataatcacctgtcatcttaaatgcccatttcatagtatgcatggta |
216 |
Q |
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||| |||||||| |||||| | | | | |||| |||||||||||||| ||||| ||| || ||| ||||||||||||||| ||||||||||| |
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| T |
11061671 |
gtttttgatctcaggtaaagcactgtgattatagtttttatcagcatgtgaaccataattaccagttatccaaaatgcccatttcattgtatgcatggtc |
11061770 |
T |
|
| Q |
217 |
aatctttttacatatatgtccttcacataccctcctctaccaacagctgttttgattctgacacctgattctgttcgaatggctgtgatgtc |
308 |
Q |
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| | | || ||||||||||| ||||||||||||||||| || |||||||| |||||||||| ||||||||| || | | |||||||||||| |
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| T |
11061771 |
attttcttcacatatatgtctttcacataccctcctctccctacagctgtcttgattctgatacctgattcggtatggacggctgtgatgtc |
11061862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 136 - 287
Target Start/End: Complemental strand, 41334187 - 41334036
Alignment:
| Q |
136 |
gcattagggtcaaagttagtatcagcatgtgaattataatcacctgtcatcttaaatgcccatttcatagtatgcatggtaaatctttttacatatatgt |
235 |
Q |
| |
|
|||||||| ||| |||| ||||||| || ||| |||||| ||||||||| ||||||||||||||| || | ||| || | |||| | |||||||||| |
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| T |
41334187 |
gcattaggatcatagttgttatcagcgtgagaaccataatctcctgtcatccaaaatgcccatttcatggttttcatagtcattcttctaacatatatgt |
41334088 |
T |
|
| Q |
236 |
ccttcacataccctcctctaccaacagctgttttgattctgacacctgattc |
287 |
Q |
| |
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|||| ||||| |||||||| |||||||| |||||||| || || |||||||| |
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|
| T |
41334087 |
ccttgacatatcctcctcttccaacagcagttttgatcctaactcctgattc |
41334036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 290
Target Start/End: Original strand, 45067428 - 45067488
Alignment:
| Q |
230 |
atatgtccttcacataccctcctctaccaacagctgttttgattctgacacctgattctgt |
290 |
Q |
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|||| ||||||||||| | ||||||||||| |||||||||||||| ||| |||||||||| |
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| T |
45067428 |
atatatccttcacatatgcgcctctaccaacggctgttttgattctaacagctgattctgt |
45067488 |
T |
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