View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21643_low_17 (Length: 306)
Name: NF21643_low_17
Description: NF21643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21643_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 9 - 290
Target Start/End: Original strand, 30723311 - 30723592
Alignment:
| Q |
9 |
tctaaacgatggatagattgttggactttcgtcaccaaggtgaacttagatgattgtgtgttctttaaacacaagaagaagaaatcaggtggaaaacggt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
30723311 |
tctaaacgatggatagattgttggactttcgtcaccaaggtgaacttagatgatagtatgttctttaaacacaagaagaagaaatcaggtggaaaacggt |
30723410 |
T |
|
| Q |
109 |
actttataaactttgtcaatagagtacttcatcttactaaaagtaacactgctgaaagtttttctcttgttatcactaacaagtatgatatttcccttct |
208 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30723411 |
actttataaactttgtcaatagagcacttcatcttactaaaagtaacactgctgaaagtttttctcttgttatcactaacaagtatgatatttcccttct |
30723510 |
T |
|
| Q |
209 |
aaatacatggatctctggcatcttgaaacgaaatgtaaaaaagctttctatcactacatatttagagctacccttctctgct |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30723511 |
aaatacatggatctctggcatcttgaaacgaaatgtaaaaaagctttctatcactacatatttagagctacccttctctgct |
30723592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 197
Target Start/End: Original strand, 30715694 - 30715807
Alignment:
| Q |
84 |
aagaagaaatcaggtggaaaacggtactttataaactttgtcaatagagtacttcatcttactaaaagtaacactgctgaaagtttttctcttgttatca |
183 |
Q |
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||||| |||||||||||||||| |||||||||||||||||||||||| ||||| |||| | | | | | | || ||| ||||||||||||| |||| |
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| T |
30715694 |
aagaaaaaatcaggtggaaaacaacactttataaactttgtcaatagagcacttctgcttaatgagaattatagtgtggaatgtttttctcttgtgatca |
30715793 |
T |
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| Q |
184 |
ctaacaagtatgat |
197 |
Q |
| |
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|||| ||||||||| |
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| T |
30715794 |
ctaataagtatgat |
30715807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 120 - 236
Target Start/End: Original strand, 9678534 - 9678650
Alignment:
| Q |
120 |
tttgtcaatagagtacttcatcttactaaaagtaacactgctgaaagtttttctcttgttatcactaacaagtatgatatttcccttctaaatacatgga |
219 |
Q |
| |
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||||||||||||| |||| ||||||||||||| | | || ||||||||||||||||| |||||||| |||||||| | || ||||||| |||||||| |
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| T |
9678534 |
tttgtcaatagagcccttcttcttactaaaagtgaaaatgtggaaagtttttctcttgtgatcactaataagtatgacctatctcttctaagtacatgga |
9678633 |
T |
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| Q |
220 |
tctctggcatcttgaaa |
236 |
Q |
| |
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||||| |||| |||||| |
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| T |
9678634 |
tctcttgcatgttgaaa |
9678650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 120 - 236
Target Start/End: Original strand, 13543478 - 13543594
Alignment:
| Q |
120 |
tttgtcaatagagtacttcatcttactaaaagtaacactgctgaaagtttttctcttgttatcactaacaagtatgatatttcccttctaaatacatgga |
219 |
Q |
| |
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||||||||||||| |||| ||||||||||||| | | || ||||||||||||||||| |||||||| |||||||| | || ||||||| |||||||| |
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| T |
13543478 |
tttgtcaatagagcccttcttcttactaaaagtgaaaatgtggaaagtttttctcttgtgatcactaataagtatgacctatctcttctaagtacatgga |
13543577 |
T |
|
| Q |
220 |
tctctggcatcttgaaa |
236 |
Q |
| |
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||||| |||| |||||| |
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| T |
13543578 |
tctcttgcatgttgaaa |
13543594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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