View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21643_low_19 (Length: 294)
Name: NF21643_low_19
Description: NF21643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21643_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 151 - 285
Target Start/End: Original strand, 51845253 - 51845387
Alignment:
| Q |
151 |
taaagcatgtaccatgatgattccatgatgaattgtgaatttgatgaagttaggattttgggtgggtgagggccgaattctagagaaagggaggagaaaa |
250 |
Q |
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| T |
51845253 |
taaagcatgtaccatgatgattccatgatgaattgtgaatttgatgaagttaggattttgggtgggtgaggggcgaattctagagaaagggaggagaaaa |
51845352 |
T |
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| Q |
251 |
attgttaacctagagagagaagtgagtagaataat |
285 |
Q |
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| T |
51845353 |
attgttaacctagagagagaagtgagtagaataat |
51845387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 20 - 151
Target Start/End: Original strand, 51845060 - 51845191
Alignment:
| Q |
20 |
accataatcacccacaacctagtagctatccatcatgggtattccataaacaagtttacttgatgatttccatggaattggaggaaagatgatgaacttg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
51845060 |
accataatcacccacaacctagtagctatccatcatgggtattccaaaaacaagtttacttgatgatttccatggaattggaggaaagattatgaacttg |
51845159 |
T |
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| Q |
120 |
gaaaatgagagaaagaggggcggttgagcaat |
151 |
Q |
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| T |
51845160 |
gaaaatgagagaaagaggggcggttgagcaat |
51845191 |
T |
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