View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21643_low_20 (Length: 288)
Name: NF21643_low_20
Description: NF21643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21643_low_20 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 22 - 288
Target Start/End: Original strand, 30723024 - 30723290
Alignment:
| Q |
22 |
aagcatagacaagtgatacttgatattggatcattgttaacatgcattaatatggatagtgtttgattcatttaaagaatattatatgcattaatattga |
121 |
Q |
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| T |
30723024 |
aagcatagacaagtgatacttgatattggatcattgttaacatgcattaatatggatagtgtttgattcattcaaagaatattctatgcattaatattga |
30723123 |
T |
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| Q |
122 |
tacttggtagtgtttgaaaatgcagaaaaatagttctaggaaaactgttaaacaaatggagtctgttggttcaactaataagaagcataaggcaaacgag |
221 |
Q |
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| T |
30723124 |
tacttggtagtgtttgaaaatgcagaaaaatagttctaggaaaactgttaaacaaatggagtctgttggttcaagtaataagaagcataaggcaaacgag |
30723223 |
T |
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| Q |
222 |
gatataatcagcaatctacctgattcacttataactcacattctgtcttgtgtccctacgaaagacg |
288 |
Q |
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| T |
30723224 |
gatataatcagcaatctacctgattcacttataacttacattctgtcttgtgtccctacgaaagacg |
30723290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 30722985 - 30723017
Alignment:
| Q |
35 |
tgatacttgatattggatcattgttaacatgca |
67 |
Q |
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| T |
30722985 |
tgatacttgatattggatcattgttaacatgca |
30723017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 186
Target Start/End: Original strand, 30715072 - 30715110
Alignment:
| Q |
148 |
aaaatagttctaggaaaactgttaaacaaatggagtctg |
186 |
Q |
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| T |
30715072 |
aaaatagttctaggaaaactgctatacaaatggagtctg |
30715110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 286
Target Start/End: Complemental strand, 11360372 - 11360305
Alignment:
| Q |
219 |
gaggatataatcagcaatctacctgattcacttataactcacattctgtcttgtgtccctacgaaaga |
286 |
Q |
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| T |
11360372 |
gaggatttaatcagtaatctacctgattcacttataactcacattatatcttgtcttcctacaaaaga |
11360305 |
T |
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