View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21643_low_21 (Length: 283)
Name: NF21643_low_21
Description: NF21643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21643_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 58 - 254
Target Start/End: Complemental strand, 27933388 - 27933192
Alignment:
| Q |
58 |
atcataaagtacaaagcagagattaatatcaaagccaatggttttgcatcgagagttatctatgcctaactattacaaaatgaagaaataatttttgtac |
157 |
Q |
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| T |
27933388 |
atcataaagtacaaagcagagattaatatcaaagccaatggttttgcatcgagagttatctatgcctaactattacaaaatgaagaaataatttttgtac |
27933289 |
T |
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| Q |
158 |
ttacgctgggaagtagcttgttaatagaattcttgatgtagtacnnnnnnncacacattcatcaccctctaaattaatgccaactgatccattctgc |
254 |
Q |
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| T |
27933288 |
ttacgctgggaagtagcttgttaatagaattcttgatgtagtactttttttcacacattcatcaccctctaaattaatgccaactgatccattctgc |
27933192 |
T |
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