View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21643_low_22 (Length: 271)
Name: NF21643_low_22
Description: NF21643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21643_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 129 - 253
Target Start/End: Complemental strand, 10190285 - 10190161
Alignment:
| Q |
129 |
tgttaagagttactttattccaagtgtaattaagtatcatgtgttaactgttttgtattggacaaatccataatccatgatatgtattgtttacttcact |
228 |
Q |
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| T |
10190285 |
tgttaagagttactttattccaagtgtaattaagtatcatgtgttaactgttttgtattggacaaatccataatccatgatatgtattgtttacttcact |
10190186 |
T |
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| Q |
229 |
tcatttagacttcttacattattga |
253 |
Q |
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| T |
10190185 |
tcatttagacttcttacattattga |
10190161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 10192569 - 10192437
Alignment:
| Q |
1 |
cccaaatctgttttacatttctttttctgtattttacatatctgttctcactattttagtttggaatagccgtggggtaagttggggcattttgatacat |
100 |
Q |
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| T |
10192569 |
cccaaatctgttttacatttctttttctgtattttacatatctgttctctctattttagtttggtatagctgtggggtaagttggggcattttgatactt |
10192470 |
T |
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| Q |
101 |
agattgttatacttatatgcagaatctgtgtta |
133 |
Q |
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| T |
10192469 |
ggattgttatacttatatgcagaatctgtgtta |
10192437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 111
Target Start/End: Original strand, 19461084 - 19461192
Alignment:
| Q |
3 |
caaatctgttttacatttctttttctgtattttacatatctgttctcactattttagtttggaatagccgtggggtaagttggggcattttgatacatag |
102 |
Q |
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| T |
19461084 |
caaatctgttttacatttcttttcctgtattttacatttattttctctctattttagtttaggatagctgtggggtaaattggggcattttgatactcgg |
19461183 |
T |
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| Q |
103 |
attgttata |
111 |
Q |
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| T |
19461184 |
attgttata |
19461192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 221
Target Start/End: Original strand, 19463338 - 19463429
Alignment:
| Q |
129 |
tgttaagagttactttattccaagtgtaattaagtatcatgtgttaactgttttgtattggacaaatccataatccatgatatgtattgttta |
221 |
Q |
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|||| ||||||| |||||||||||||||||||| ||||| | ||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
19463338 |
tgttcagagttattttattccaagtgtaattaattatcactagctaactgttttgtattggac-tatccataatccatgatatgtattgttta |
19463429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 254
Target Start/End: Original strand, 19463473 - 19463516
Alignment:
| Q |
211 |
tgtattgtttacttcacttcatttagacttcttacattattgat |
254 |
Q |
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| T |
19463473 |
tgtattattcacttcacttcatttagacttcttacattattgat |
19463516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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