View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21643_low_25 (Length: 251)
Name: NF21643_low_25
Description: NF21643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21643_low_25 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 52170815 - 52170587
Alignment:
| Q |
1 |
acagaggtccgagtaagtagctgaagaaggatcaacaagggtgtataaaactgatgaattatcactacagtcaacactgtgaaacgtattcggtagagtt |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
52170815 |
acagaggtccgagtaagtagctgtagaaggatcaacaagggtgtataaaactgatgaattatcactacattcaacactgtgaaacgtattcggtagagtt |
52170716 |
T |
|
| Q |
101 |
tcagttgtaagaaggcaatagtaaaacaaagtcacgttagcgacatcatcataaagtttaaacaaactgctattgaatgtgatgttgtcgacaggaacac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
52170715 |
tcagttgtaagaaggcaatagtaaaacaaagtcacgttagcgacatcatcataaagtttaaacaaagtgctattgaatgtgatgttgtcgacaggaacac |
52170616 |
T |
|
| Q |
201 |
aaacatcatctctcgagtaatcttcccta |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
52170615 |
aaacatcatctctcgagtaatcttcccta |
52170587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University