View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21643_low_4 (Length: 636)
Name: NF21643_low_4
Description: NF21643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21643_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 593; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 18 - 626
Target Start/End: Original strand, 39775369 - 39775977
Alignment:
| Q |
18 |
ctatacatgtcctaaagttgtgtatgattgttgttggaaaatgaaactaatagtagtagtaattttgatcttacaagcgatgtttaattaagcatgaccg |
117 |
Q |
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| T |
39775369 |
ctatacatgtcctaaagttgtgtatgattgttgttggaaaatgaaactaatagtagtagtaattttgatcttacaagcgatgtttaattaagcatgaccg |
39775468 |
T |
|
| Q |
118 |
tactctactttaaggtatcatgctcttgtcgttataatgcctttcaatctattttgagttgtctcttgttggattgatcattgaaaacaaaaataatagc |
217 |
Q |
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| T |
39775469 |
tactctactttaaggtatcatgctcttgtcgttataatgcctttcaatctattttgagttgtcccttgttggattgatcattgaaaacaaaaataatagc |
39775568 |
T |
|
| Q |
218 |
aatggttttattttgtggggtagtccttatttgatggatcgatggacatgaaatgtttgtgcaattgtgctgcattatttggatacccaacccaacaaag |
317 |
Q |
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| T |
39775569 |
aatggttttattttgtggggtagtccttatttgatggatcgatggacatgaaatgtttgtgcaattgtgctgcattatttggatacccaacccaacaaag |
39775668 |
T |
|
| Q |
318 |
ttcctttgaataaatcatcatgaaaatgatttataccaataatcttcttgtctgatgattagtctgcatcttaccaattgttgacaatgacgaagatttt |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
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| T |
39775669 |
ttcctttgaataaatcatcatgaaaatgatttataccaataatcttcttgtctgatgattagtctgcatcttaccaattgtcgacaatgacgaagatatt |
39775768 |
T |
|
| Q |
418 |
ttccacttaccaattcaaagctatcgtataaaacaacgtaaccagacaagggatgtttgtttgtttcttacgtaaaggatgtgtatgctaagtgattacg |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39775769 |
ttccacttaccaattcaaagctatcgtataaaacaacgtaaccagacaagggatttttgtttgtttcttacgtaaaggatgtgtatgctaagtgattacg |
39775868 |
T |
|
| Q |
518 |
tcatcaatgcgcccaagcaaatcctcctcgtgcatcagacgatgatccataaatcacgcttagttagaatccttagcgggttcaaggacttttcccaaat |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39775869 |
tcatcaatgcgcccaagcaaatcctcctcgtgcatcagacgatgatccataaatcacgcttagttagaatccttagcgggttcaaggacttttcccaaat |
39775968 |
T |
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| Q |
618 |
tctcctatg |
626 |
Q |
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| T |
39775969 |
tctcctatg |
39775977 |
T |
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