View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21643_low_8 (Length: 475)
Name: NF21643_low_8
Description: NF21643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21643_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 22 - 460
Target Start/End: Complemental strand, 18755968 - 18755531
Alignment:
| Q |
22 |
cccattatcaagcattacaatacgtgggtgacaaaaagacatacaaaaattgatcattcacttataaaatttttattcggttgattaattaatgatnnnn |
121 |
Q |
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| T |
18755968 |
cccattatcaagcattacaatacgtgggtgacaaaaagacaaacaaaaattgatcattcacttataaaatttt-attcggttgattaattaatgataaaa |
18755870 |
T |
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| Q |
122 |
nnnttccatccaataaggctaatcaagtgttggctcctccggtgcatatgaatcatgatcatcctaatgttttgggtggggaggcactggtactcgccac |
221 |
Q |
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| T |
18755869 |
aaattccatccaataaggctaatcaggtattggctcctccggtgcatatgaatcatgatggtcctaatgttttgggtggggaggcactagtactcgccac |
18755770 |
T |
|
| Q |
222 |
ttcacgattaaaagtgcttatgatctttcaatatggaaactctcaccacattgaaggggattggcatatgatatgggactagaaaggtcctcacagaatc |
321 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18755769 |
ttcacgattaaaagtgcttatgatctttcaacatggaaactctcaccacagtgaaggggattggcatatgatatgggactagaaaggtcctcacagaatc |
18755670 |
T |
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| Q |
322 |
caaacatttatgtggactacggctcatgagcgtctcttaactaactatcgtcggagtagatggagagttgggatatctcccatttgtcatatgcgtagga |
421 |
Q |
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| T |
18755669 |
caaacctttatgtggactgcagctcatgagcgtctcttaactaactatcgttgcaatagatggagagttgggatatcccccatttgtcatgtgtgtagga |
18755570 |
T |
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| Q |
422 |
atgacgatgagacgctcatccatgccttaagagattgtg |
460 |
Q |
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| T |
18755569 |
atggcgatgagacgttcatccatgccttaagagattgtg |
18755531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 202 - 460
Target Start/End: Original strand, 1615299 - 1615556
Alignment:
| Q |
202 |
gaggcactggtactcgccacttcacgattaaaagtgcttatgatctttcaatatggaaactctcaccacattgaaggggattggcatatgatatgggact |
301 |
Q |
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| T |
1615299 |
gaggcactagtactcgccacttcacggttaaaagtgcttatgacctt-caacatggaaattctaagcacattgaaggtgattgggatatgatatgggact |
1615397 |
T |
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| Q |
302 |
agaaaggtcctcacagaatccaaacatttatgtggactacggctcatgagcgtctcttaactaactatcgtcggagtagatggagagttgggatatctcc |
401 |
Q |
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|||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| || |
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| T |
1615398 |
agaaaggtcctcacagaatccaaatctttatgtggattgcggctcatgagcgtctcttaaccaactatcgtcggagtagatggtgagttgggatatcacc |
1615497 |
T |
|
| Q |
402 |
catttgtcatatgcgtaggaatgacgatgagacgctcatccatgccttaagagattgtg |
460 |
Q |
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| T |
1615498 |
catttgtcctgtgtgtgggaatgtcgatgagacactcatccatgccttgagagattgtg |
1615556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 304 - 374
Target Start/End: Original strand, 36274993 - 36275063
Alignment:
| Q |
304 |
aaaggtcctcacagaatccaaacatttatgtggactacggctcatgagcgtctcttaactaactatcgtcg |
374 |
Q |
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| T |
36274993 |
aaaggtcctcacagaatccaaacattcatgtggatggcggcacatgaacgcctcttaactaactatcgtcg |
36275063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 383
Target Start/End: Original strand, 9468256 - 9468368
Alignment:
| Q |
271 |
attgaaggggattggcatatgatatgggactagaaaggtcctcacagaatccaaacatttatgtggactacggctcatgagcgtctcttaactaactatc |
370 |
Q |
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| T |
9468256 |
attgatggggattggaagaagatatgggattggaaaggtcctcataaaatccaaaccttcatgtggataacgacatatgaacgcctcttaacaaactacc |
9468355 |
T |
|
| Q |
371 |
gtcggagtagatg |
383 |
Q |
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|||| |||||||| |
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| T |
9468356 |
gtcgaagtagatg |
9468368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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