View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21643_low_9 (Length: 473)
Name: NF21643_low_9
Description: NF21643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21643_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 13 - 457
Target Start/End: Original strand, 30298504 - 30298940
Alignment:
| Q |
13 |
aagaatattttggaggctgccttcaatgtaagcataccaacacactatttatttattttgtatatacattatatggtttcaatcattatcaaaacatagt |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
30298504 |
aagaatattttggaggctgccttcaatgtaagcataccaacacagaatttatttattt-----atacattatatggtttcaatcattatcaaaacatagt |
30298598 |
T |
|
| Q |
113 |
cattataatacttatccttgcatatattgttacaaatacaggccaattacgaggagatagagagggtgcttatagaagagcatgaacaagagccacaaca |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30298599 |
cattataatacttatccttgcatatattgttacaaatacaggccaattacgaggagatagagagggtgcttatagaagagcatgaacaagagccacaaca |
30298698 |
T |
|
| Q |
213 |
caggagaggccttaggaaggatgaaaggaggcagcagagccaggaagcaaatgtaatagtaaaagtatcaagagaacagattgaagaactgagcaaaaat |
312 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||| |||||| | || |
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| T |
30298699 |
caggagaggccttaggaaagat---aggaggcagcagagccaggattcaaatgtaatagtcaaagtatcaagagaacagattgaggaattgagcagacat |
30298795 |
T |
|
| Q |
313 |
gccaagtctagctccagaaggagtgaatcttctgaatctgaaccaatcaacttgagaaaccacaaacctatctactccaacaagtttggcaatttctttg |
412 |
Q |
| |
|
|| || ||||||||||||||||||| ||| || ||||||| |||| |||||||||||| || | |||||||||| |||||| |||||||||| ||||||| |
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| T |
30298796 |
gcaaaatctagctccagaaggagtggatcctccgaatctgcaccattcaacttgagaagccgcgaacctatctattccaacgagtttggcaacttctttg |
30298895 |
T |
|
| Q |
413 |
agatcaccccagagaaaaatccacagcttaaagacttggatatat |
457 |
Q |
| |
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||||||| || |||||||||||||| ||||||||||||||||||| |
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|
| T |
30298896 |
agatcactccggagaaaaatccacaacttaaagacttggatatat |
30298940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 146 - 457
Target Start/End: Original strand, 30286167 - 30286478
Alignment:
| Q |
146 |
aaatacaggccaattacgaggagatagagagggtgcttatagaagagcatgaacaagagccacaacacaggagaggccttaggaaggatgaaaggaggca |
245 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30286167 |
aaatacagtccaattacgaggagatagagagggtgcttatagaagagaatgaacaagagccacaacacaggagaggccttaggaaggatgaaaggaggca |
30286266 |
T |
|
| Q |
246 |
gcagagccaggaagcaaatgtaatagtaaaagtatcaagagaacagattgaagaactgagcaaaaatgccaagtctagctccagaaggagtgaatcttct |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30286267 |
gcagagccaggaagcaaatgtaatagtaaaagtatcaagagaacagattgaagaactgagcaaaaatgccaagtctagctccagaaggagtgaatcttct |
30286366 |
T |
|
| Q |
346 |
gaatctgaaccaatcaacttgagaaaccacaaacctatctactccaacaagtttggcaatttctttgagatcaccccagagaaaaatccacagcttaaag |
445 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30286367 |
gaatctgaaccaatcaacttgagaaaccagaaacctatctactccaacaagtttggcaatttctttgagatcaccccagagaaaaatccacagcttaaag |
30286466 |
T |
|
| Q |
446 |
acttggatatat |
457 |
Q |
| |
|
|||||||||||| |
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|
| T |
30286467 |
acttggatatat |
30286478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 457
Target Start/End: Original strand, 30303687 - 30304146
Alignment:
| Q |
13 |
aagaatattttggaggctgccttcaatgtaagcataccaacacactatttatttattt----tgtatatacattatatggt-------ttcaatcattat |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||| ||||| |||||| |
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|
| T |
30303687 |
aagaatattttggaggctgccttcaatgtaagcataccaacacactatttgtttatttcttttgtatatacagtatatggtataaattttcaaccattat |
30303786 |
T |
|
| Q |
102 |
ca-------aaacatagtcattataatacttatccttgcatatattgttacaaatacaggccaattacgaggagatagagagggtgcttatagaagagca |
194 |
Q |
| |
|
|| |||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
30303787 |
catttatcaaaacgtagtcattataatacttgtccttgcatatattgttacaaatataggccaattatgaggagatagagagggtgcttatagaagagca |
30303886 |
T |
|
| Q |
195 |
tgaacaagagccacaacacaggagaggccttaggaaggatgaaaggaggca---gcagagccaggaagcaaatgtaatagtaaaagtatcaagagaacag |
291 |
Q |
| |
|
|| ||||| || || |||||||||||||||| || ||||| || ||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
30303887 |
ggagcaagatccgca---caggagaggccttagg------gataggagacataagcagagccaggaagcaaatgtaatagtaaaagtatcaagggaacag |
30303977 |
T |
|
| Q |
292 |
attgaagaactgagcaaaaatgccaagtctagctccagaaggag---tgaatcttctgaatctgaaccaatcaacttgagaaaccacaaacctatctact |
388 |
Q |
| |
|
||||| ||| |||||| | ||||||| |||||||| || ||||| || ||| || ||||||| |||| |||||||||||| | |||||||||||| | |
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|
| T |
30303978 |
attgaggaattgagcagacatgccaaatctagctctagtaggaggagtgcatcctccgaatctgcaccattcaacttgagaagtcgcaaacctatctatt |
30304077 |
T |
|
| Q |
389 |
ccaacaagtttggcaatttctttgagatcaccccagagaaaaatccacagcttaaagacttggatatat |
457 |
Q |
| |
|
||||| |||||||||| |||||||||||||| || |||||||||| ||| ||| ||||||||||||||| |
|
|
| T |
30304078 |
ccaacgagtttggcaacttctttgagatcactccggagaaaaatcaacaacttcaagacttggatatat |
30304146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 13 - 352
Target Start/End: Original strand, 30291033 - 30291384
Alignment:
| Q |
13 |
aagaatattttggaggctgccttcaatgtaagcataccaacacactatttatttattttgtatatacat-tatatggtttcaat-------------cat |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || | ||| ||| |
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|
| T |
30291033 |
aagaatattttggaggctgccttcaatgtaagcataccaacacactatttatttattttgtatatatatatatatagtataaattttcgaccattatcat |
30291132 |
T |
|
| Q |
99 |
t-atcaaaacatagtcattataatacttatccttgcatatattgttacaaatacaggccaattacgaggagatagagagggtgcttatagaagagcatga |
197 |
Q |
| |
|
| |||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
30291133 |
ttatcaaaacatagtcattataatacctgtccttgcatatattgttacaaatacagtccaattacgaggagatagagagggtgcttatagaagagcagga |
30291232 |
T |
|
| Q |
198 |
acaagagccacaacacaggagaggccttaggaaggatgaaaggaggc---agcagagccaggaagcaaatgtaatagtaaaagtatcaagagaacagatt |
294 |
Q |
| |
|
|||||||||| ||||||||||||||||||| || ||||| | |||||||||||||||||||||||||||| ||||| ||||| ||||||||| |
|
|
| T |
30291233 |
gcaagagccacgacacaggagaggccttagg------gataggagacataagcagagccaggaagcaaatgtaatagtcaaagtgtcaagggaacagatt |
30291326 |
T |
|
| Q |
295 |
gaagaactgagcaaaaatgccaagtctagctccagaaggagtgaatcttctgaatctg |
352 |
Q |
| |
|
|| ||| |||||| | ||||||| |||||||| |||||||||| ||| || ||||||| |
|
|
| T |
30291327 |
gaggaattgagcagacatgccaaatctagctctagaaggagtgcatcctccgaatctg |
30291384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 13 - 352
Target Start/End: Original strand, 30314575 - 30314924
Alignment:
| Q |
13 |
aagaatattttggaggctgccttcaatgtaagcataccaacacactatttatttattttgtata-----tacattatatggt-------ttcaatcatta |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||| ||| ||||| ||||| |
|
|
| T |
30314575 |
aagaatattttggaggctgcctttaatgtaagcataccaacacactatttatttattttgtatactatatacagtataaggtataaattttcaaccatta |
30314674 |
T |
|
| Q |
101 |
t-------caaaacatagtcattataatacttatccttgcatatattgttacaaatacaggccaattacgaggagatagagagggtgcttatagaagagc |
193 |
Q |
| |
|
| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||| |||| ||||| |||||| |
|
|
| T |
30314675 |
tcatttatcaaaacatagtcattataatacttgtccttgcatatattgttacaaatataggccaattatgaggagatagagcgggtccttattgaagag- |
30314773 |
T |
|
| Q |
194 |
atgaacaagagccacaacacaggagaggccttaggaaggatgaaaggaggc---agcagagccaggaagcaaatgtaatagtaaaagtatcaagagaaca |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||| | ||||||||||||||||| |||||||||| ||||| ||||| ||||| |
|
|
| T |
30314774 |
-----caagagccacaacacaggagaggccttagg------gataggagacataagcagagccaggaagcagatgtaatagtcaaagtgtcaagggaaca |
30314862 |
T |
|
| Q |
291 |
gattgaagaactgagcaaaaatgccaagtctagctccagaaggagtgaatcttctgaatctg |
352 |
Q |
| |
|
|||||| ||| |||||| | ||||||| |||||||| |||||||||| ||| || ||||||| |
|
|
| T |
30314863 |
gattgaggaattgagcagacatgccaaatctagctctagaaggagtgcatcctccgaatctg |
30314924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 328 - 457
Target Start/End: Original strand, 30314930 - 30315059
Alignment:
| Q |
328 |
agaaggagtgaatcttctgaatctgaaccaatcaacttgagaaaccacaaacctatctactccaacaagtttggcaatttctttgagatcaccccagaga |
427 |
Q |
| |
|
|||||||||| ||| || ||||||| |||| |||||||||||| ||| |||||||||| |||||| |||||||||| |||||||||||||| || |||| |
|
|
| T |
30314930 |
agaaggagtgcatcctccgaatctgcaccattcaacttgagaagccatgaacctatctattccaacgagtttggcaacttctttgagatcactccggaga |
30315029 |
T |
|
| Q |
428 |
aaaatccacagcttaaagacttggatatat |
457 |
Q |
| |
|
|||||||||| ||| ||||||||||||||| |
|
|
| T |
30315030 |
aaaatccacaacttcaagacttggatatat |
30315059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 328 - 457
Target Start/End: Original strand, 30291390 - 30291519
Alignment:
| Q |
328 |
agaaggagtgaatcttctgaatctgaaccaatcaacttgagaaaccacaaacctatctactccaacaagtttggcaatttctttgagatcaccccagaga |
427 |
Q |
| |
|
|||||||||| ||| || ||||||| |||| |||||||||||| || |||||||||| |||||| |||||||||| |||||||||||||| || |||| |
|
|
| T |
30291390 |
agaaggagtgcatcctccgaatctgcaccattcaacttgagaagccgtgaacctatctattccaacgagtttggcaacttctttgagatcactccggaga |
30291489 |
T |
|
| Q |
428 |
aaaatccacagcttaaagacttggatatat |
457 |
Q |
| |
|
|||||||||| ||| ||||||||||||||| |
|
|
| T |
30291490 |
aaaatccacaacttcaagacttggatatat |
30291519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 247 - 457
Target Start/End: Original strand, 46809603 - 46809813
Alignment:
| Q |
247 |
cagagccaggaagcaaatgtaatagtaaaagtatcaagagaacagattgaagaactgagcaaaaatgccaagtctagctccagaaggagtgaatcttctg |
346 |
Q |
| |
|
|||||||| ||||| |||| |||||| ||||| ||||||||||||||||| |||||||| | | ||||||| || ||||| | || || ||| |||| |
|
|
| T |
46809603 |
cagagccaagaagctaatgcaatagtcaaagtgtcaagagaacagattgaggaactgaggagacatgccaaatcaagctcaaagagaagcatatcctctg |
46809702 |
T |
|
| Q |
347 |
aatctgaaccaatcaacttgagaaaccacaaacctatctactccaacaagtttggcaatttctttgagatcaccccagagaaaaatccacagcttaaaga |
446 |
Q |
| |
|
| |||| ||| ||||||||||||||| ||| || |||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| ||| |||| |
|
|
| T |
46809703 |
agtctggacccttcaacttgagaaaccgcaaccccctctattccaacaagtttggcaagttctttgagattaccccagagaaaaatccacaacttcaaga |
46809802 |
T |
|
| Q |
447 |
cttggatatat |
457 |
Q |
| |
|
|||||||||| |
|
|
| T |
46809803 |
tttggatatat |
46809813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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