View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21644_high_2 (Length: 609)

Name: NF21644_high_2
Description: NF21644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21644_high_2
NF21644_high_2
[»] chr1 (16 HSPs)
chr1 (21-595)||(34142153-34142731)
chr1 (182-262)||(30202817-30202897)
chr1 (326-372)||(10356197-10356243)
chr1 (326-364)||(10841901-10841939)
chr1 (326-372)||(12213994-12214040)
chr1 (326-372)||(15382833-15382879)
chr1 (326-372)||(17651394-17651440)
chr1 (326-372)||(28832185-28832231)
chr1 (189-235)||(30496412-30496458)
chr1 (326-384)||(19620577-19620637)
chr1 (326-367)||(27172741-27172782)
chr1 (326-367)||(30279639-30279680)
chr1 (326-367)||(32209857-32209898)
chr1 (328-372)||(17339218-17339262)
chr1 (328-372)||(27785982-27786026)
chr1 (326-374)||(28712547-28712595)
[»] chr4 (20 HSPs)
chr4 (176-269)||(4124791-4124884)
chr4 (326-372)||(7371562-7371608)
chr4 (189-277)||(16527841-16527929)
chr4 (322-374)||(27537745-27537797)
chr4 (221-277)||(43870981-43871037)
chr4 (326-365)||(6459945-6459984)
chr4 (323-366)||(9196211-9196254)
chr4 (326-365)||(24837494-24837533)
chr4 (322-372)||(11949777-11949827)
chr4 (326-372)||(19124636-19124682)
chr4 (326-372)||(24885814-24885860)
chr4 (326-372)||(40070982-40071028)
chr4 (326-372)||(43034356-43034402)
chr4 (328-365)||(2422701-2422738)
chr4 (215-268)||(21867801-21867854)
chr4 (215-268)||(21923662-21923715)
chr4 (326-367)||(35021486-35021527)
chr4 (326-367)||(40847086-40847127)
chr4 (326-367)||(47007321-47007362)
chr4 (327-363)||(39146644-39146680)
[»] chr2 (22 HSPs)
chr2 (322-384)||(15427689-15427753)
chr2 (186-275)||(22010077-22010166)
chr2 (323-367)||(9547428-9547472)
chr2 (326-365)||(8761585-8761624)
chr2 (328-367)||(19159944-19159983)
chr2 (326-372)||(2256972-2257018)
chr2 (322-360)||(7276629-7276667)
chr2 (326-372)||(16204831-16204877)
chr2 (322-372)||(19549433-19549483)
chr2 (192-230)||(28750433-28750471)
chr2 (326-372)||(33063987-33064033)
chr2 (326-372)||(34977205-34977251)
chr2 (322-372)||(36359311-36359361)
chr2 (326-367)||(9964492-9964533)
chr2 (324-365)||(10991541-10991582)
chr2 (326-367)||(22523031-22523072)
chr2 (190-239)||(26211999-26212048)
chr2 (326-367)||(37119277-37119318)
chr2 (326-367)||(40967390-40967431)
chr2 (323-367)||(5168598-5168642)
chr2 (197-233)||(12450931-12450967)
chr2 (328-372)||(12599879-12599923)
[»] chr7 (18 HSPs)
chr7 (189-292)||(17759153-17759256)
chr7 (326-367)||(429197-429238)
chr7 (326-383)||(8883554-8883611)
chr7 (323-366)||(39043753-39043796)
chr7 (326-372)||(30793060-30793106)
chr7 (322-372)||(47342448-47342498)
chr7 (326-367)||(3672571-3672612)
chr7 (326-367)||(5317307-5317348)
chr7 (326-367)||(22991410-22991451)
chr7 (330-375)||(23413057-23413102)
chr7 (326-367)||(28200404-28200445)
chr7 (326-367)||(32315224-32315265)
chr7 (322-367)||(32855517-32855562)
chr7 (326-367)||(35142168-35142209)
chr7 (326-375)||(48065203-48065252)
chr7 (325-365)||(15015241-15015281)
chr7 (186-262)||(28752726-28752800)
chr7 (326-366)||(47960897-47960937)
[»] chr8 (14 HSPs)
chr8 (326-372)||(40795378-40795424)
chr8 (326-367)||(17062358-17062399)
chr8 (326-367)||(17585959-17586000)
chr8 (320-372)||(1877676-1877728)
chr8 (326-372)||(2554226-2554272)
chr8 (325-382)||(7987732-7987790)
chr8 (326-372)||(17898080-17898126)
chr8 (330-372)||(24195254-24195296)
chr8 (326-372)||(27718908-27718954)
chr8 (326-372)||(32421570-32421616)
chr8 (326-372)||(39433411-39433457)
chr8 (326-367)||(10982727-10982768)
chr8 (326-367)||(13357460-13357501)
chr8 (327-372)||(29546895-29546940)
[»] chr6 (9 HSPs)
chr6 (326-372)||(13496117-13496163)
chr6 (326-365)||(24212560-24212599)
chr6 (326-367)||(361755-361796)
chr6 (320-365)||(6799635-6799680)
chr6 (326-367)||(12904336-12904377)
chr6 (326-367)||(28951400-28951441)
chr6 (328-364)||(2445302-2445338)
chr6 (331-367)||(3373400-3373436)
chr6 (326-381)||(18256884-18256940)
[»] chr5 (18 HSPs)
chr5 (326-372)||(13864345-13864391)
chr5 (221-286)||(17750866-17750931)
chr5 (328-372)||(20721053-20721097)
chr5 (324-367)||(31159428-31159471)
chr5 (326-372)||(8545003-8545049)
chr5 (326-372)||(13796331-13796377)
chr5 (326-372)||(18589881-18589927)
chr5 (326-372)||(41650953-41650999)
chr5 (208-241)||(2576875-2576908)
chr5 (326-367)||(5001556-5001597)
chr5 (326-375)||(11720895-11720944)
chr5 (326-367)||(16076432-16076473)
chr5 (326-367)||(17046335-17046376)
chr5 (326-367)||(20927640-20927681)
chr5 (177-226)||(25021127-25021176)
chr5 (326-367)||(33369432-33369473)
chr5 (326-375)||(33645700-33645749)
chr5 (326-367)||(39610360-39610401)
[»] chr3 (13 HSPs)
chr3 (326-371)||(5941309-5941354)
chr3 (325-362)||(42784957-42784994)
chr3 (326-365)||(33404229-33404268)
chr3 (326-372)||(7824808-7824854)
chr3 (326-372)||(10843795-10843841)
chr3 (326-372)||(19468452-19468498)
chr3 (326-372)||(38130973-38131019)
chr3 (331-372)||(1111855-1111896)
chr3 (326-367)||(8942018-8942059)
chr3 (322-367)||(29631183-29631228)
chr3 (327-372)||(49975819-49975864)
chr3 (326-367)||(51882219-51882260)
chr3 (324-364)||(39100438-39100478)
[»] scaffold0118 (1 HSPs)
scaffold0118 (326-372)||(45413-45459)


Alignment Details
Target: chr1 (Bit Score: 466; Significance: 0; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 21 - 595
Target Start/End: Complemental strand, 34142731 - 34142153
Alignment:
Q  21 ctagcagcatctaatttacatcctttcaaacctcctcatcataagctaatttgatttagggtgtaaacaattattttggtttgaatgtttgagttgctat 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34142731 ctagcagcatctaatttacatcctttcaaacctcctcatcataagctaatttgatttagggtgtaaacaattattttggtttgaatgtttgagttgctat 34142632  T
Q  121 cattagtgttcaaatgtatcaacattgaaaacatatatctataaatgtttcttttatttttgtcatcaaatgtg-ttttttattggttaatttagtccat 219  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||    
T  34142631 cattagtgttcaaatgtatcgacattgaaaacatatatctataaatgtttcttttatttttgtcatcaaatatgtttttttgttggttaatttagtccat 34142532  T
Q  220 aaaattattaacaaaagatacaataaggatgtgtttgcaatttcaatacatctagagattacagtgacaacgttacgcttatttagatatgaaaatgg-t 318  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |    
T  34142531 aaaattattaacaaaagatacaataaggatacgtttgcaatttcaatacatctagagattacggtgacaacgttacgcttatttagatatgaaaatggtt 34142432  T
Q  319 atactcatgagcttaactcagttgatatgcacaatacataatatatgcatggtcgg-gttcaaatctgagcc-nnnnnnntatgaaaatggttgtttact 416  Q
     | |||||||||||| |||||||| |||||||||||||||||||||||| ||| || |||| ||||||||||        ||||||||||||||||||||    
T  34142431 gtgctcatgagcttagctcagttggtatgcacaatacataatatatgcaaggttggagttcgaatctgagccaaaaaaaatatgaaaatggttgtttact 34142332  T
Q  417 cattgtactatctctaatatgctctttgtcgtttgttgatattaccatcttgccctcattctaattttgcactcatgcatgggctgattaatttagtgat 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  34142331 cattgtactatctctaatatgctctttgtcgtttgttgatattaccatcttgccctcgttctaattttgcactcatgcatggactgattaatttagtgat 34142232  T
Q  517 tataaacacatttccactattattttcctagctcctaattattctcacatttgactaaatttagtgagtacggtctctg 595  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34142231 tataaacacatttccactattattttcctagctcctaattattctcacatttgactaaatttagtgagtacggtctctg 34142153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 30202817 - 30202897
Alignment:
Q  182 gtcatcaaatgtgttttttattggttaatttagtccataaaattattaacaaaagatacaataaggatgtgtttgcaattt 262  Q
    ||||| |||||||||||| ||| || |||||||| |||||||||| ||||||||||  || ||| ||| ||||||||||||    
T  30202817 gtcattaaatgtgtttttcatttgtcaatttagttcataaaattactaacaaaagaggcactaaagatttgtttgcaattt 30202897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 372
Target Start/End: Complemental strand, 10356243 - 10356197
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 372  Q
    ||||||||||||||||| |||| ||||| ||||||||||||| ||||    
T  10356243 tgagcttaactcagttggtatggacaatgcataatatatgcacggtc 10356197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 364
Target Start/End: Original strand, 10841901 - 10841939
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatat 364  Q
    |||||||||||||||||||||| ||||| ||||||||||    
T  10841901 tgagcttaactcagttgatatggacaatgcataatatat 10841939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 372
Target Start/End: Original strand, 12213994 - 12214040
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 372  Q
    |||||||| ||||||||||| | ||||||||||||||||||| ||||    
T  12213994 tgagcttagctcagttgataggaacaatacataatatatgcaaggtc 12214040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 372
Target Start/End: Complemental strand, 15382879 - 15382833
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 372  Q
    |||||||||||||||||||||| |||||  |||||||||||| ||||    
T  15382879 tgagcttaactcagttgatatgaacaatgtataatatatgcaaggtc 15382833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 372
Target Start/End: Complemental strand, 17651440 - 17651394
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 372  Q
    ||||||||||| |||||||||| ||||||||||| ||||||| ||||    
T  17651440 tgagcttaactaagttgatatggacaatacataaaatatgcaaggtc 17651394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 372
Target Start/End: Complemental strand, 28832231 - 28832185
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 372  Q
    ||||||||||||||||| |||| ||||| ||||||||||||| ||||    
T  28832231 tgagcttaactcagttggtatgaacaatgcataatatatgcaaggtc 28832185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 189 - 235
Target Start/End: Complemental strand, 30496458 - 30496412
Alignment:
Q  189 aatgtgttttttattggttaatttagtccataaaattattaacaaaa 235  Q
    |||||||||||||||| | ||||||||||||||||||| ||| ||||    
T  30496458 aatgtgttttttattgatcaatttagtccataaaattactaataaaa 30496412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 384
Target Start/End: Original strand, 19620577 - 19620637
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc--gggttcaaatct 384  Q
    |||||||| |||||||| || | ||||||||||||||||||| ||||  ||||||||||||    
T  19620577 tgagcttagctcagttggtaaggacaatacataatatatgcaaggtccggggttcaaatct 19620637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 367
Target Start/End: Complemental strand, 27172782 - 27172741
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgca 367  Q
    ||||||||||||||||| |||| |||| ||||||||||||||    
T  27172782 tgagcttaactcagttggtatggacaaaacataatatatgca 27172741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 367
Target Start/End: Complemental strand, 30279680 - 30279639
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgca 367  Q
    |||||||| ||||||||||| | |||||||||||||||||||    
T  30279680 tgagcttagctcagttgataggtacaatacataatatatgca 30279639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 367
Target Start/End: Complemental strand, 32209898 - 32209857
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgca 367  Q
    |||||||| ||||||||||| | |||||||||||||||||||    
T  32209898 tgagcttacctcagttgataggaacaatacataatatatgca 32209857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 328 - 372
Target Start/End: Original strand, 17339218 - 17339262
Alignment:
Q  328 agcttaactcagttgatatgcacaatacataatatatgcatggtc 372  Q
    ||||||||||||||| |||| ||||||||||||||| ||| ||||    
T  17339218 agcttaactcagttggtatgaacaatacataatataagcaaggtc 17339262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 328 - 372
Target Start/End: Complemental strand, 27786026 - 27785982
Alignment:
Q  328 agcttaactcagttgatatgcacaatacataatatatgcatggtc 372  Q
    ||||||||||||||| | || ||||||||||||||||||| ||||    
T  27786026 agcttaactcagttggtttgaacaatacataatatatgcaaggtc 27785982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 326 - 374
Target Start/End: Complemental strand, 28712595 - 28712547
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgcatggtcgg 374  Q
    ||||| || |||||||| |||||||||| ||||||||||||| ||||||    
T  28712595 tgagcatagctcagttgttatgcacaatgcataatatatgcaaggtcgg 28712547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 176 - 269
Target Start/End: Original strand, 4124791 - 4124884
Alignment:
Q  176 atttttgtcatcaaatgtgttttttattggttaatttagtccataaaattattaacaaaagatacaataaggatgtgtttgcaatttcaataca 269  Q
    ||||| ||| ||||||||||||||| ||||| |||||||||||| |||||| ||||||||||  || ||||||||| |||| ||| || |||||    
T  4124791 attttagtcctcaaatgtgttttttgttggtcaatttagtccatgaaattactaacaaaagaggcactaaggatgtatttgtaatatcgataca 4124884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 372
Target Start/End: Complemental strand, 7371608 - 7371562
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 372  Q
    |||||||||||||||||||| | ||||||||||||||||||| ||||    
T  7371608 tgagcttaactcagttgataaggacaatacataatatatgcaaggtc 7371562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 189 - 277
Target Start/End: Original strand, 16527841 - 16527929
Alignment:
Q  189 aatgtgttttttattggttaatttagtccataaaattattaacaaaagatacaataaggatgtgtttgcaatttcaatacatctagaga 277  Q
    |||||||| ||| ||| | |||||||| ||||||||||||||  || || ||| |||  |||||||| |||||||||||||| ||||||    
T  16527841 aatgtgttatttgttgatcaatttagttcataaaattattaatgaaggagacactaataatgtgtttacaatttcaatacatttagaga 16527929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 322 - 374
Target Start/End: Original strand, 27537745 - 27537797
Alignment:
Q  322 ctcatgagcttaactcagttgatatgcacaatacataatatatgcatggtcgg 374  Q
    ||||||||||||||||| ||| |||| ||||| ||||||||||||| ||||||    
T  27537745 ctcatgagcttaactcaattggtatggacaatgcataatatatgcaaggtcgg 27537797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 221 - 277
Target Start/End: Original strand, 43870981 - 43871037
Alignment:
Q  221 aaattattaacaaaagatacaataaggatgtgtttgcaatttcaatacatctagaga 277  Q
    |||||| ||||||||  ||||| |||||||||||||||||||||||| || ||||||    
T  43870981 aaattactaacaaaaactacaaaaaggatgtgtttgcaatttcaatatatttagaga 43871037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 365
Target Start/End: Complemental strand, 6459984 - 6459945
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatg 365  Q
    |||||||||||||||||||||| ||||| |||||||||||    
T  6459984 tgagcttaactcagttgatatggacaatgcataatatatg 6459945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 366
Target Start/End: Original strand, 9196211 - 9196254
Alignment:
Q  323 tcatgagcttaactcagttgatatgcacaatacataatatatgc 366  Q
    |||||||||||||| |||||||||| ||||| ||||||||||||    
T  9196211 tcatgagcttaacttagttgatatggacaatgcataatatatgc 9196254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 365
Target Start/End: Complemental strand, 24837533 - 24837494
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatg 365  Q
    ||||||||||| |||||||||| |||||||||||||||||    
T  24837533 tgagcttaacttagttgatatgaacaatacataatatatg 24837494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 322 - 372
Target Start/End: Complemental strand, 11949827 - 11949777
Alignment:
Q  322 ctcatgagcttaactcagttgatatgcacaatacataatatatgcatggtc 372  Q
    |||||||||||| |||||||| |||| ||||| ||||||||||||| ||||    
T  11949827 ctcatgagcttagctcagttggtatggacaatgcataatatatgcaaggtc 11949777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 372
Target Start/End: Complemental strand, 19124682 - 19124636
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 372  Q
    ||||||||||||||||||||   ||||||||||||||||||| ||||    
T  19124682 tgagcttaactcagttgataaagacaatacataatatatgcaaggtc 19124636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 372
Target Start/End: Complemental strand, 24885860 - 24885814
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 372  Q
    ||||||||||||||||| |||| ||||||||||| ||||||| ||||    
T  24885860 tgagcttaactcagttggtatggacaatacataaaatatgcaaggtc 24885814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 372
Target Start/End: Complemental strand, 40071028 - 40070982
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 372  Q
    ||||||||||||||||| |||| ||||| ||||||||||||| ||||    
T  40071028 tgagcttaactcagttggtatgaacaatgcataatatatgcaaggtc 40070982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 372
Target Start/End: Complemental strand, 43034402 - 43034356
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 372  Q
    ||||||||||||||||| |||| ||||| ||||||||||||| ||||    
T  43034402 tgagcttaactcagttggtatggacaatgcataatatatgcaaggtc 43034356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 365
Target Start/End: Complemental strand, 2422738 - 2422701
Alignment:
Q  328 agcttaactcagttgatatgcacaatacataatatatg 365  Q
    |||||||||||||||||||| |||||| ||||||||||    
T  2422738 agcttaactcagttgatatggacaatatataatatatg 2422701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 21867801 - 21867854
Alignment:
Q  215 tccataaaattattaacaaaagatacaataaggatgtgtttgcaatttcaatac 268  Q
    |||||||||||| ||||||||||   | || |||||||||||||||||||||||    
T  21867801 tccataaaattactaacaaaagaggaactagggatgtgtttgcaatttcaatac 21867854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 21923662 - 21923715
Alignment:
Q  215 tccataaaattattaacaaaagatacaataaggatgtgtttgcaatttcaatac 268  Q
    |||||||||||| ||||||||||   | || |||||||||||||||||||||||    
T  21923662 tccataaaattactaacaaaagaggaactagggatgtgtttgcaatttcaatac 21923715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 367
Target Start/End: Complemental strand, 35021527 - 35021486
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgca 367  Q
    |||||||| ||||||||||||| ||||||||||| |||||||    
T  35021527 tgagcttagctcagttgatatggacaatacataaaatatgca 35021486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 367
Target Start/End: Complemental strand, 40847127 - 40847086
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgca 367  Q
    ||||||||||||||||||||   |||||||||||||||||||    
T  40847127 tgagcttaactcagttgatagagacaatacataatatatgca 40847086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 367
Target Start/End: Complemental strand, 47007362 - 47007321
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgca 367  Q
    ||||||||||||||||| || | |||||||||||||||||||    
T  47007362 tgagcttaactcagttgttagggacaatacataatatatgca 47007321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 327 - 363
Target Start/End: Original strand, 39146644 - 39146680
Alignment:
Q  327 gagcttaactcagttgatatgcacaatacataatata 363  Q
    ||||||||||||||||||||| ||||| |||||||||    
T  39146644 gagcttaactcagttgatatggacaatgcataatata 39146680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 322 - 384
Target Start/End: Original strand, 15427689 - 15427753
Alignment:
Q  322 ctcatgagcttaactcagttgatatgcacaatacataatatatgcatggtc--gggttcaaatct 384  Q
    |||||||||||| ||||||||||||| |||||| |||||||||||| ||||  ||||||||||||    
T  15427689 ctcatgagcttagctcagttgatatggacaatatataatatatgcaaggtctagggttcaaatct 15427753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 186 - 275
Target Start/End: Complemental strand, 22010166 - 22010077
Alignment:
Q  186 tcaaatgtgttttttattggttaatttagtccataaaattattaacaaaagatacaataaggatgtgtttgcaatttcaatacatctaga 275  Q
    ||||||||||||||| || || ||||| ||||||||||||| ||||||||||     || |||||||||||||||||  |||||| ||||    
T  22010166 tcaaatgtgttttttgttcgtcaatttcgtccataaaattactaacaaaagaggttctagggatgtgtttgcaatttagatacatttaga 22010077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 323 - 367
Target Start/End: Complemental strand, 9547472 - 9547428
Alignment:
Q  323 tcatgagcttaactcagttgatatgcacaatacataatatatgca 367  Q
    |||| |||||||||||||||||||| ||||| |||||||||||||    
T  9547472 tcataagcttaactcagttgatatggacaatgcataatatatgca 9547428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 365
Target Start/End: Complemental strand, 8761624 - 8761585
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatg 365  Q
    ||||||||||||||||| |||| |||||||||||||||||    
T  8761624 tgagcttaactcagttggtatggacaatacataatatatg 8761585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 367
Target Start/End: Original strand, 19159944 - 19159983
Alignment:
Q  328 agcttaactcagttgatatgcacaatacataatatatgca 367  Q
    |||||||||||||||||||| ||||| |||||||||||||    
T  19159944 agcttaactcagttgatatgaacaatgcataatatatgca 19159983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 372
Target Start/End: Original strand, 2256972 - 2257018
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 372  Q
    ||||||||||||||||| |||| ||||| ||||||||||||| ||||    
T  2256972 tgagcttaactcagttggtatggacaatgcataatatatgcaaggtc 2257018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 322 - 360
Target Start/End: Complemental strand, 7276667 - 7276629
Alignment:
Q  322 ctcatgagcttaactcagttgatatgcacaatacataat 360  Q
    |||||||||||||||||||||||| | ||||||||||||    
T  7276667 ctcatgagcttaactcagttgatagggacaatacataat 7276629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 372
Target Start/End: Complemental strand, 16204877 - 16204831
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 372  Q
    |||||||||||||||||||| | ||||| ||||||||||||| ||||    
T  16204877 tgagcttaactcagttgataaggacaatgcataatatatgcaaggtc 16204831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 322 - 372
Target Start/End: Original strand, 19549433 - 19549483
Alignment:
Q  322 ctcatgagcttaactcagttgatatgcacaatacataatatatgcatggtc 372  Q
    |||||||||||||||||| || |||| ||||| ||||||||||||| ||||    
T  19549433 ctcatgagcttaactcagctggtatgaacaatgcataatatatgcaaggtc 19549483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 192 - 230
Target Start/End: Original strand, 28750433 - 28750471
Alignment:
Q  192 gtgttttttattggttaatttagtccataaaattattaa 230  Q
    |||||||| ||||||||||||||| ||||||||||||||    
T  28750433 gtgtttttcattggttaatttagttcataaaattattaa 28750471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 372
Target Start/End: Original strand, 33063987 - 33064033
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 372  Q
    |||||||| ||||||||||||| ||||| ||||||||||||| ||||    
T  33063987 tgagcttagctcagttgatatggacaatgcataatatatgcaaggtc 33064033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 372
Target Start/End: Original strand, 34977205 - 34977251
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 372  Q
    ||||||||||||||||| |||| ||||| ||||||||||||| ||||    
T  34977205 tgagcttaactcagttggtatggacaatgcataatatatgcaaggtc 34977251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 322 - 372
Target Start/End: Original strand, 36359311 - 36359361
Alignment:
Q  322 ctcatgagcttaactcagttgatatgcacaatacataatatatgcatggtc 372  Q
    |||||||||||||||| |||||| || ||||| ||||||||||||| ||||    
T  36359311 ctcatgagcttaactcggttgatttggacaatgcataatatatgcaaggtc 36359361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 367
Target Start/End: Original strand, 9964492 - 9964533
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgca 367  Q
    |||| ||||||||||||||||| ||||||| |||||||||||    
T  9964492 tgagtttaactcagttgatatgaacaatacgtaatatatgca 9964533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 365
Target Start/End: Original strand, 10991541 - 10991582
Alignment:
Q  324 catgagcttaactcagttgatatgcacaatacataatatatg 365  Q
    ||||||||||||||||||| || | |||||||||||||||||    
T  10991541 catgagcttaactcagttggtaaggacaatacataatatatg 10991582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 367
Target Start/End: Complemental strand, 22523072 - 22523031
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgca 367  Q
    |||||||| |||||||| |||| |||||||||||||||||||    
T  22523072 tgagcttagctcagttggtatggacaatacataatatatgca 22523031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 26211999 - 26212048
Alignment:
Q  190 atgtgttttttattggttaatttagtccataaaattattaacaaaagata 239  Q
    ||||||||||| || || |||||||||||||||||||  |||||||||||    
T  26211999 atgtgttttttgttagtcaatttagtccataaaattacaaacaaaagata 26212048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 367
Target Start/End: Complemental strand, 37119318 - 37119277
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgca 367  Q
    |||| ||||||||||||||||| ||||| |||||||||||||    
T  37119318 tgagtttaactcagttgatatgaacaatgcataatatatgca 37119277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 367
Target Start/End: Complemental strand, 40967431 - 40967390
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgca 367  Q
    |||||||||||||||||||| | ||||| |||||||||||||    
T  40967431 tgagcttaactcagttgataaggacaatgcataatatatgca 40967390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 323 - 367
Target Start/End: Complemental strand, 5168642 - 5168598
Alignment:
Q  323 tcatgagcttaactcagttgatatgcacaatacataatatatgca 367  Q
    ||||||||||||||||||||||| | | ||| |||||||||||||    
T  5168642 tcatgagcttaactcagttgatagggataatgcataatatatgca 5168598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 12450931 - 12450967
Alignment:
Q  197 ttttattggttaatttagtccataaaattattaacaa 233  Q
    |||| ||||||||||||||||||||||||| ||||||    
T  12450931 ttttgttggttaatttagtccataaaattactaacaa 12450967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 328 - 372
Target Start/End: Complemental strand, 12599923 - 12599879
Alignment:
Q  328 agcttaactcagttgatatgcacaatacataatatatgcatggtc 372  Q
    ||||||||||||||  |||| ||||||||||||||||||| ||||    
T  12599923 agcttaactcagttagtatggacaatacataatatatgcaaggtc 12599879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 189 - 292
Target Start/End: Original strand, 17759153 - 17759256
Alignment:
Q  189 aatgtgttttttattggttaatttagtccataaaattattaacaaaagatacaataaggatgtgtttgcaatttcaatacatctagagattacagtgaca 288  Q
    |||||||||||| || || |||| ||||||||  |||||||||||||||  || |||||  |||||||||||||| |||||| ||  ||||| |||| ||    
T  17759153 aatgtgttttttgtttgtcaattaagtccatagtattattaacaaaagaggcactaaggtcgtgtttgcaatttcgatacatttaaggattatagtggca 17759252  T
Q  289 acgt 292  Q
    ||||    
T  17759253 acgt 17759256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 326 - 367
Target Start/End: Complemental strand, 429238 - 429197
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgca 367  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  429238 tgagcttaactcagttgatatggataatacataatatatgca 429197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 326 - 383
Target Start/End: Original strand, 8883554 - 8883611
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgcatggtcgggttcaaatc 383  Q
    ||||||||||||||||| |||| ||||| |||||||| |||| |||||||||| ||||    
T  8883554 tgagcttaactcagttggtatggacaatgcataatatgtgcaaggtcgggttcgaatc 8883611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 366
Target Start/End: Original strand, 39043753 - 39043796
Alignment:
Q  323 tcatgagcttaactcagttgatatgcacaatacataatatatgc 366  Q
    |||||||||||||||||||| |||| ||||| ||||||||||||    
T  39043753 tcatgagcttaactcagttggtatggacaatgcataatatatgc 39043796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 372
Target Start/End: Complemental strand, 30793106 - 30793060
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 372  Q
    ||||||||||||||||| |||| ||||| |||| |||||||||||||    
T  30793106 tgagcttaactcagttggtatggacaatgcatagtatatgcatggtc 30793060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 322 - 372
Target Start/End: Complemental strand, 47342498 - 47342448
Alignment:
Q  322 ctcatgagcttaactcagttgatatgcacaatacataatatatgcatggtc 372  Q
    ||||||||||||||||||||| | || ||||| ||||||||||||| ||||    
T  47342498 ctcatgagcttaactcagttggtttggacaatgcataatatatgcaaggtc 47342448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 367
Target Start/End: Complemental strand, 3672612 - 3672571
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgca 367  Q
    |||| ||| ||||||||||||| |||||||||||||||||||    
T  3672612 tgagtttagctcagttgatatggacaatacataatatatgca 3672571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 367
Target Start/End: Complemental strand, 5317348 - 5317307
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgca 367  Q
    |||||||||||||||||||||| | ||| |||||||||||||    
T  5317348 tgagcttaactcagttgatatggaaaatgcataatatatgca 5317307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 367
Target Start/End: Complemental strand, 22991451 - 22991410
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgca 367  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  22991451 tgagcttaactcagttggtatggacaatgcataatatatgca 22991410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 375
Target Start/End: Complemental strand, 23413102 - 23413057
Alignment:
Q  330 cttaactcagttgatatgcacaatacataatatatgcatggtcggg 375  Q
    ||||||||||||| |||| ||||| ||||||||||||| |||||||    
T  23413102 cttaactcagttggtatggacaatgcataatatatgcaaggtcggg 23413057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 367
Target Start/End: Complemental strand, 28200445 - 28200404
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgca 367  Q
    ||||||||||||||||| || | |||||||||||||||||||    
T  28200445 tgagcttaactcagttggtaggaacaatacataatatatgca 28200404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 367
Target Start/End: Original strand, 32315224 - 32315265
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgca 367  Q
    |||||||||||||||||||| | ||| |||||||||||||||    
T  32315224 tgagcttaactcagttgataaggacattacataatatatgca 32315265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 367
Target Start/End: Original strand, 32855517 - 32855562
Alignment:
Q  322 ctcatgagcttaactcagttgatatgcacaatacataatatatgca 367  Q
    ||||||| |||||||||||||||||| | ||| |||||||||||||    
T  32855517 ctcatgaacttaactcagttgatatgaataatgcataatatatgca 32855562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 367
Target Start/End: Complemental strand, 35142209 - 35142168
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgca 367  Q
    |||||||| ||||||||||||| ||||| |||||||||||||    
T  35142209 tgagcttagctcagttgatatggacaatgcataatatatgca 35142168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 375
Target Start/End: Original strand, 48065203 - 48065252
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgcatggtcggg 375  Q
    ||||||||||||| ||| |||| ||||| ||||||||||||| |||||||    
T  48065203 tgagcttaactcaattggtatggacaattcataatatatgcaaggtcggg 48065252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 325 - 365
Target Start/End: Original strand, 15015241 - 15015281
Alignment:
Q  325 atgagcttaactcagttgatatgcacaatacataatatatg 365  Q
    ||||||||||||||||||||| | ||||| |||||||||||    
T  15015241 atgagcttaactcagttgataagaacaatgcataatatatg 15015281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 186 - 262
Target Start/End: Complemental strand, 28752800 - 28752726
Alignment:
Q  186 tcaaatgtgttttttattggttaatttagtccataaaattattaacaaaagatacaataaggatgtgtttgcaattt 262  Q
    ||||||||||||||| ||| | ||||| | |||||||||||||||||||| | ||| ||  ||||||||||||||||    
T  28752800 tcaaatgtgtttttt-ttgttcaattttg-ccataaaattattaacaaaatagacattagagatgtgtttgcaattt 28752726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 326 - 366
Target Start/End: Original strand, 47960897 - 47960937
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgc 366  Q
    ||||||||||||| |||||| | ||||||||||||||||||    
T  47960897 tgagcttaactcaattgataaggacaatacataatatatgc 47960937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 372
Target Start/End: Original strand, 40795378 - 40795424
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 372  Q
    ||||||||||||||||| |||| ||||||||||||||||||| ||||    
T  40795378 tgagcttaactcagttggtatgaacaatacataatatatgcaaggtc 40795424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 326 - 367
Target Start/End: Complemental strand, 17062399 - 17062358
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgca 367  Q
    |||||||||||||||||||||  |||||||||||||||||||    
T  17062399 tgagcttaactcagttgatatagacaatacataatatatgca 17062358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 326 - 367
Target Start/End: Original strand, 17585959 - 17586000
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgca 367  Q
    |||||||||||||||||||||  |||||||||||||||||||    
T  17585959 tgagcttaactcagttgatatagacaatacataatatatgca 17586000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 320 - 372
Target Start/End: Complemental strand, 1877728 - 1877676
Alignment:
Q  320 tactcatgagcttaactcagttgatatgcacaatacataatatatgcatggtc 372  Q
    ||||| |||||||||||||||||||||  ||||| ||||||||||||| ||||    
T  1877728 tactcgtgagcttaactcagttgatatagacaatgcataatatatgcaaggtc 1877676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 372
Target Start/End: Complemental strand, 2554272 - 2554226
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 372  Q
    |||||||| ||||||||||||| ||||||||||| ||||||| ||||    
T  2554272 tgagcttagctcagttgatatggacaatacataaaatatgcaaggtc 2554226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 325 - 382
Target Start/End: Complemental strand, 7987790 - 7987732
Alignment:
Q  325 atgagcttaactcagttgatatgcacaatacataatatatgcatggt-cgggttcaaat 382  Q
    |||||||||||||| ||| || | ||||||||||||||||||| ||| |||||||||||    
T  7987790 atgagcttaactcaattgctaaggacaatacataatatatgcaaggtccgggttcaaat 7987732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 372
Target Start/End: Original strand, 17898080 - 17898126
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 372  Q
    ||||||||||||||||| |||| |||| |||||||||||||| ||||    
T  17898080 tgagcttaactcagttggtatggacaaaacataatatatgcaaggtc 17898126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 330 - 372
Target Start/End: Original strand, 24195254 - 24195296
Alignment:
Q  330 cttaactcagttgatatgcacaatacataatatatgcatggtc 372  Q
    |||| ||||||||||||| ||||||||||||||||||| ||||    
T  24195254 cttagctcagttgatatgaacaatacataatatatgcaaggtc 24195296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 372
Target Start/End: Complemental strand, 27718954 - 27718908
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 372  Q
    |||||||| ||||||||||||| ||||| ||||||||||||| ||||    
T  27718954 tgagcttagctcagttgatatggacaatgcataatatatgcaaggtc 27718908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 372
Target Start/End: Original strand, 32421570 - 32421616
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 372  Q
    ||||||||||||||||| |||| |||||| |||||||||||| ||||    
T  32421570 tgagcttaactcagttggtatggacaatatataatatatgcaaggtc 32421616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 372
Target Start/End: Original strand, 39433411 - 39433457
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 372  Q
    |||||||| ||||||||||||| ||||||||||| ||||||| ||||    
T  39433411 tgagcttagctcagttgatatgaacaatacataaaatatgcaaggtc 39433457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 367
Target Start/End: Original strand, 10982727 - 10982768
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgca 367  Q
    ||||||||||||||||| |||| |||||| ||||||||||||    
T  10982727 tgagcttaactcagttggtatggacaatatataatatatgca 10982768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 367
Target Start/End: Complemental strand, 13357501 - 13357460
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgca 367  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  13357501 tgagcttaactcagttggtatggacaatgcataatatatgca 13357460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 372
Target Start/End: Original strand, 29546895 - 29546940
Alignment:
Q  327 gagcttaactcagttgatatgcacaatacataatatatgcatggtc 372  Q
    ||||||||||||||||||| | |||||| |||||||||||| ||||    
T  29546895 gagcttaactcagttgatagggacaatagataatatatgcaaggtc 29546940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 372
Target Start/End: Original strand, 13496117 - 13496163
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 372  Q
    |||||||||||||||||||||| ||||| ||||||||||||| ||||    
T  13496117 tgagcttaactcagttgatatgaacaatgcataatatatgcaaggtc 13496163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 365
Target Start/End: Complemental strand, 24212599 - 24212560
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatg 365  Q
    |||||||||||||||||||||| ||||| |||||||||||    
T  24212599 tgagcttaactcagttgatatggacaatgcataatatatg 24212560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 367
Target Start/End: Original strand, 361755 - 361796
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgca 367  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  361755 tgagcttaactcagttggtatggacaatgcataatatatgca 361796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 365
Target Start/End: Original strand, 6799635 - 6799680
Alignment:
Q  320 tactcatgagcttaactcagttgatatgcacaatacataatatatg 365  Q
    ||||| |||||||||||||||| | ||| |||||||||||||||||    
T  6799635 tactcgtgagcttaactcagttaacatggacaatacataatatatg 6799680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 367
Target Start/End: Complemental strand, 12904377 - 12904336
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgca 367  Q
    |||||||| ||||||||||||| ||||| |||||||||||||    
T  12904377 tgagcttacctcagttgatatgaacaatgcataatatatgca 12904336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 367
Target Start/End: Original strand, 28951400 - 28951441
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgca 367  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  28951400 tgagcttaactcagttggtatgaacaatgcataatatatgca 28951441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 328 - 364
Target Start/End: Original strand, 2445302 - 2445338
Alignment:
Q  328 agcttaactcagttgatatgcacaatacataatatat 364  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  2445302 agcttaactcagttgatatgaacaatgcataatatat 2445338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 331 - 367
Target Start/End: Complemental strand, 3373436 - 3373400
Alignment:
Q  331 ttaactcagttgatatgcacaatacataatatatgca 367  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  3373436 ttaactcagttgatatggacaatgcataatatatgca 3373400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 326 - 381
Target Start/End: Original strand, 18256884 - 18256940
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgcatggt-cgggttcaaa 381  Q
    |||||||| ||||||||||| | ||||| ||||||||||||| ||| ||||||||||    
T  18256884 tgagcttagctcagttgataaggacaatgcataatatatgcaaggtccgggttcaaa 18256940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 372
Target Start/End: Original strand, 13864345 - 13864391
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 372  Q
    ||||||||||||||||| |||| ||||||||||||||||||| ||||    
T  13864345 tgagcttaactcagttggtatgaacaatacataatatatgcaaggtc 13864391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 221 - 286
Target Start/End: Original strand, 17750866 - 17750931
Alignment:
Q  221 aaattattaacaaaagatacaataaggatgtgtttgcaatttcaatacatctagagattacagtga 286  Q
    ||||||| ||||||||| ||| |||  || |||||||||||||||||||| ||||||||| |||||    
T  17750866 aaattatcaacaaaagagacactaaaaatatgtttgcaatttcaatacatttagagattatagtga 17750931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 328 - 372
Target Start/End: Original strand, 20721053 - 20721097
Alignment:
Q  328 agcttaactcagttgatatgcacaatacataatatatgcatggtc 372  Q
    ||||||||||||||| |||| ||||||||||||||||||| ||||    
T  20721053 agcttaactcagttggtatggacaatacataatatatgcaaggtc 20721097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 367
Target Start/End: Original strand, 31159428 - 31159471
Alignment:
Q  324 catgagcttaactcagttgatatgcacaatacataatatatgca 367  Q
    ||||||||||||||||||||||   |||||||||||||||||||    
T  31159428 catgagcttaactcagttgataaagacaatacataatatatgca 31159471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 372
Target Start/End: Complemental strand, 8545049 - 8545003
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 372  Q
    |||||||||||||||||||| | ||||| ||||||||||||| ||||    
T  8545049 tgagcttaactcagttgataaggacaatgcataatatatgcaaggtc 8545003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 372
Target Start/End: Original strand, 13796331 - 13796377
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 372  Q
    ||||||||||||||| |||||| ||||| ||||||||||||| ||||    
T  13796331 tgagcttaactcagtcgatatgaacaatgcataatatatgcaaggtc 13796377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 372
Target Start/End: Complemental strand, 18589927 - 18589881
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 372  Q
    ||||||||||||||||| |||| ||||| ||||||||||||| ||||    
T  18589927 tgagcttaactcagttggtatgaacaatgcataatatatgcaaggtc 18589881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 372
Target Start/End: Complemental strand, 41650999 - 41650953
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 372  Q
    ||||||||||||||||| |||| ||||| ||||||||||||| ||||    
T  41650999 tgagcttaactcagttggtatggacaatgcataatatatgcaaggtc 41650953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 241
Target Start/End: Original strand, 2576875 - 2576908
Alignment:
Q  208 aatttagtccataaaattattaacaaaagataca 241  Q
    |||||||||||||||||||||||| |||||||||    
T  2576875 aatttagtccataaaattattaacgaaagataca 2576908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 367
Target Start/End: Original strand, 5001556 - 5001597
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgca 367  Q
    |||||||||||| ||||||| | |||||||||||||||||||    
T  5001556 tgagcttaactcggttgataaggacaatacataatatatgca 5001597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 375
Target Start/End: Original strand, 11720895 - 11720944
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgcatggtcggg 375  Q
    ||||||||||||||||| || | ||||| ||||||||||||| |||||||    
T  11720895 tgagcttaactcagttggtagggacaatgcataatatatgcaaggtcggg 11720944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 367
Target Start/End: Original strand, 16076432 - 16076473
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgca 367  Q
    |||||||||||||| ||||||| ||||| |||||||||||||    
T  16076432 tgagcttaactcagctgatatggacaatgcataatatatgca 16076473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 367
Target Start/End: Original strand, 17046335 - 17046376
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgca 367  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  17046335 tgagcttaactcagttggtatggacaatgcataatatatgca 17046376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 367
Target Start/End: Original strand, 20927640 - 20927681
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgca 367  Q
    |||||||| |||||||| |||| |||||||||||||||||||    
T  20927640 tgagcttagctcagttggtatggacaatacataatatatgca 20927681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 25021127 - 25021176
Alignment:
Q  177 tttttgtcatcaaatgtgttttttattggttaatttagtccataaaatta 226  Q
    |||||||| ||||||||||||||  ||||| |||||||||||||| ||||    
T  25021127 tttttgtcttcaaatgtgtttttcgttggtcaatttagtccataatatta 25021176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 367
Target Start/End: Complemental strand, 33369473 - 33369432
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgca 367  Q
    ||||||||||||||||| |||| |||||||||||| ||||||    
T  33369473 tgagcttaactcagttggtatgaacaatacataatgtatgca 33369432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 375
Target Start/End: Complemental strand, 33645749 - 33645700
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgcatggtcggg 375  Q
    ||||||||||||||||| |||| |||||  |||||||||||| |||||||    
T  33645749 tgagcttaactcagttggtatggacaatgtataatatatgcaaggtcggg 33645700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 367
Target Start/End: Complemental strand, 39610401 - 39610360
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgca 367  Q
    |||||||| ||||||||||||| ||||| |||||||||||||    
T  39610401 tgagcttagctcagttgatatggacaatgcataatatatgca 39610360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 326 - 371
Target Start/End: Complemental strand, 5941354 - 5941309
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgcatggt 371  Q
    ||||||||||||||||| |||| ||||| |||||||||||||||||    
T  5941354 tgagcttaactcagttggtatgaacaatgcataatatatgcatggt 5941309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 325 - 362
Target Start/End: Original strand, 42784957 - 42784994
Alignment:
Q  325 atgagcttaactcagttgatatgcacaatacataatat 362  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  42784957 atgagcttaactcagttgatatggacaatacataatat 42784994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 365
Target Start/End: Original strand, 33404229 - 33404268
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatg 365  Q
    |||||||| ||||||||||||| |||||||||||||||||    
T  33404229 tgagcttagctcagttgatatggacaatacataatatatg 33404268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 372
Target Start/End: Original strand, 7824808 - 7824854
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 372  Q
    |||| ||||||||||||||||  ||||||||||||||||||| ||||    
T  7824808 tgagtttaactcagttgatatagacaatacataatatatgcaaggtc 7824854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 372
Target Start/End: Complemental strand, 10843841 - 10843795
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 372  Q
    ||||||||||||||||| |||| | ||||||||||||||||| ||||    
T  10843841 tgagcttaactcagttggtatgaataatacataatatatgcaaggtc 10843795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 372
Target Start/End: Original strand, 19468452 - 19468498
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 372  Q
    ||||||||||||||||| |||| ||||| ||||||||||||| ||||    
T  19468452 tgagcttaactcagttggtatggacaatgcataatatatgcaaggtc 19468498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 372
Target Start/End: Complemental strand, 38131019 - 38130973
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 372  Q
    ||||||||||||||||| |||| ||||| ||||||||||||| ||||    
T  38131019 tgagcttaactcagttggtatggacaatgcataatatatgcaaggtc 38130973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 372
Target Start/End: Complemental strand, 1111896 - 1111855
Alignment:
Q  331 ttaactcagttgatatgcacaatacataatatatgcatggtc 372  Q
    ||||||||||||||| | ||||||||||||||||||| ||||    
T  1111896 ttaactcagttgatagggacaatacataatatatgcaaggtc 1111855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 367
Target Start/End: Original strand, 8942018 - 8942059
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgca 367  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  8942018 tgagcttaactcagttggtatgaacaatgcataatatatgca 8942059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 367
Target Start/End: Original strand, 29631183 - 29631228
Alignment:
Q  322 ctcatgagcttaactcagttgatatgcacaatacataatatatgca 367  Q
    |||||||||||| |||||||| |||| ||||| |||||||||||||    
T  29631183 ctcatgagcttagctcagttggtatggacaatgcataatatatgca 29631228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 372
Target Start/End: Complemental strand, 49975864 - 49975819
Alignment:
Q  327 gagcttaactcagttgatatgcacaatacataatatatgcatggtc 372  Q
    |||||||||||||||| |||| ||||| ||||||||||||| ||||    
T  49975864 gagcttaactcagttgttatggacaatgcataatatatgcaaggtc 49975819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 367
Target Start/End: Complemental strand, 51882260 - 51882219
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgca 367  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  51882260 tgagcttaactcagttggtatggacaatgcataatatatgca 51882219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 324 - 364
Target Start/End: Complemental strand, 39100478 - 39100438
Alignment:
Q  324 catgagcttaactcagttgatatgcacaatacataatatat 364  Q
    |||||||||||||||||||||| | ||||| ||||||||||    
T  39100478 catgagcttaactcagttgataagaacaatgcataatatat 39100438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 372
Target Start/End: Original strand, 45413 - 45459
Alignment:
Q  326 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 372  Q
    ||||||||||||||||| | || ||||||||||||||||||| ||||    
T  45413 tgagcttaactcagttggtttggacaatacataatatatgcaaggtc 45459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University