View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21644_low_1 (Length: 620)
Name: NF21644_low_1
Description: NF21644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21644_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-169; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 178 - 548
Target Start/End: Original strand, 34657625 - 34657995
Alignment:
| Q |
178 |
cacccttttgaagaagcaacaacaacaaaagaaagaaatggagggccaagaatatctcaaaaagtctaaggttatcaaaatagactcnnnnnnntcatgg |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
34657625 |
cacccttttgaagaagcaacaacaacaaaagaaagaaatggagggccaagaatatctcaaaaagtctaaggttatcaaaatagactcaaaaaaatcatgg |
34657724 |
T |
|
| Q |
278 |
gaacattacatctcttatactaccaatcaaagttaccccgtaagtcttctttgtttatgaaaaaccatttaacttacttaatatttgaaattacactgag |
377 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
34657725 |
gaacattacatctcttatgctaccaatcaaagttaccccgtaagtcttctttgtttatgaaaaatcatttaacttactgcatatttgaaattacactgag |
34657824 |
T |
|
| Q |
378 |
tttcacaagatcatagtgacaccgtaattttgttacagctctggtcaatagattttgtcaaaatcacggtaccggtggtactatgtgattctgctaaact |
477 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||| |||||||| ||||||||||||||||| |
|
|
| T |
34657825 |
tttcacaagatcatagtgacaccgtaattttgttacagctctggtcgataggttttgtcaaaatcacgataccagtggtactctgtgattctgctaaact |
34657924 |
T |
|
| Q |
478 |
catatatgctaaattcattgtcaattcaaactcgcacttgcattttttggttttaaatgttaccaaaattg |
548 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
34657925 |
catatatgctaaattcattgtcaattcaaacatgcacttacattttttggttttaaatgttaccaaaattg |
34657995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 34657413 - 34657538
Alignment:
| Q |
18 |
ccagttgcattttgttgttcatgtatacatcaatctacaaaaaacatcttaatcaattgaacaagaaaatcaacaatttttctcgtgcaattttgctcgc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
|
|
| T |
34657413 |
ccagttgcattttgttgttcatgtatacatcaatctacaaaaaacatcttaatcaattgaacaagaaaatcaacaatttttctcgtgcaactttgctcac |
34657512 |
T |
|
| Q |
118 |
atagctaatcatatttcctcatagac |
143 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
34657513 |
atagctaatcatatttcctcatagac |
34657538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University