View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21645_high_1 (Length: 484)
Name: NF21645_high_1
Description: NF21645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21645_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 446; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 9 - 470
Target Start/End: Complemental strand, 47243363 - 47242902
Alignment:
| Q |
9 |
agaaaagagccaacaccaatcaacaacctccacatgtcatcgttcccaaaagacagagggttgttttgggtgaatttccagatctcaatcttcctgattt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47243363 |
agaaaagagccaacaccaatcaacaacctccacatgtcatcgttcccaaaagacagagggttgttttgggtgaatttccagatctcaatcttcctgattt |
47243264 |
T |
|
| Q |
109 |
tgattaccaacctactcagaaactccgatgtcccgaaaatcccaatctcaacaaatcaatctcaaccctacctttccttaattccaatttggataagcct |
208 |
Q |
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|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47243263 |
tgattaccaacctactcagaaactccaatgtcccaaaaatcccaatctcaacaaatcaatctcaaccctacctttccttaattccaatttggataagcct |
47243164 |
T |
|
| Q |
209 |
tatgtatcagacatattcgattatcttcaaaccatggagaaaaagagaagaccaatggttggttatatggagaatgttcaaagaggcattacatcaaaca |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
47243163 |
tatgtatcagacatattcgattatcttcaaaccatggagaaaaagagaagaccaatgtttggttatatggagaatgttcaaagaggcattacatcaaaca |
47243064 |
T |
|
| Q |
309 |
tgaggggcacattggttgattggttggttgaggttgcagatgaatacacgcttcttccagaaacccttcatctctctgtttcatacattgatagattctt |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47243063 |
tgaggggcacattggttgattggttggttgaggttgcagatgaatacacgcttcttccagaaacccttcatctctctgtttcatacattgatagattctt |
47242964 |
T |
|
| Q |
409 |
atctaaccaacctatcattagatctaagcttcagttacttggtgtttcatccatgctcattg |
470 |
Q |
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| T |
47242963 |
atctaaccaacctatcattagatctaagcttcagttgcttggtgtttcatccatgctcattg |
47242902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 246 - 470
Target Start/End: Complemental strand, 47249955 - 47249731
Alignment:
| Q |
246 |
agaaaaagagaagaccaatggttggttatatggagaatgttcaaagaggcattacatcaaacatgaggggcacattggttgattggttggttgaggttgc |
345 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
47249955 |
agaaaaagagaagaccaatggttggttatcttgagaatgttcagagaggcatttcatcaaacatgagggggacattggttgattggttagttgaggttgc |
47249856 |
T |
|
| Q |
346 |
agatgaatacacgcttcttccagaaacccttcatctctctgtttcatacattgatagattcttatctaaccaacctatcattagatctaagcttcagtta |
445 |
Q |
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||||||||||| ||||||||| || || |||||||| || |||||||||||||| ||||||||||||| ||||| ||| ||||||||||||||||| |
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| T |
47249855 |
agatgaatacaagcttcttcccgagacacttcatctgtcagtttcatacattgacagattcttatctattgaacctgtcagcagatctaagcttcagttg |
47249756 |
T |
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| Q |
446 |
cttggtgtttcatccatgctcattg |
470 |
Q |
| |
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|| |||||||||||||||||||||| |
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| T |
47249755 |
ctcggtgtttcatccatgctcattg |
47249731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 9 - 139
Target Start/End: Complemental strand, 47250353 - 47250223
Alignment:
| Q |
9 |
agaaaagagccaacaccaatcaacaacctccacatgtcatcgttcccaaaagacagagggttgttttgggtgaatttccagatctcaatcttcctgattt |
108 |
Q |
| |
|
|||| ||||||||||||| ||||||||| ||||| ||||| ||||||||||||||||| |||||||| ||||||||| | |||||||||||||||||||| |
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| T |
47250353 |
agaagagagccaacaccattcaacaaccaccacaagtcatggttcccaaaagacagagagttgttttaggtgaattttccgatctcaatcttcctgattt |
47250254 |
T |
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| Q |
109 |
tgattaccaacctactcagaaactccgatgt |
139 |
Q |
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|||||| ||||||||||||||||||| |||| |
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| T |
47250253 |
tgattatcaacctactcagaaactccaatgt |
47250223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 246 - 468
Target Start/End: Complemental strand, 47254383 - 47254161
Alignment:
| Q |
246 |
agaaaaagagaagaccaatggttggttatatggagaatgttcaaagaggcattacatcaaacatgaggggcacattggttgattggttggttgaggttgc |
345 |
Q |
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|||||||||||||||||||| |||||||||| ||||| ||||||||||| |||| | || ||||| || | | ||||||||||||||||||||||||| |
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| T |
47254383 |
agaaaaagagaagaccaatgattggttatattgagaaagttcaaagaggtgttactgctaatatgagagggatactggttgattggttggttgaggttgc |
47254284 |
T |
|
| Q |
346 |
agatgaatacacgcttcttccagaaacccttcatctctctgtttcatacattgatagattcttatctaaccaacctatcattagatctaagcttcagtta |
445 |
Q |
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|| ||||||| |||||| || ||||||||||||| |||||||||||||||| |||||| | || || | || ||| |||||||||||||| || |
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| T |
47254283 |
tgaagaatacaagcttctccctcaaacccttcatcttgctgtttcatacattgacagattcctgtccaatgagtctgtcaacagatctaagcttcaattg |
47254184 |
T |
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| Q |
446 |
cttggtgtttcatccatgctcat |
468 |
Q |
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||||||||||||||||||||||| |
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| T |
47254183 |
cttggtgtttcatccatgctcat |
47254161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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