View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21645_high_2 (Length: 448)
Name: NF21645_high_2
Description: NF21645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21645_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 9 - 323
Target Start/End: Complemental strand, 49230089 - 49229767
Alignment:
| Q |
9 |
gattatacttgacaaaatgtgaatgattttttctttgaactgctctcatgatccaacatcaacatacatgcaattatttctatatttgaccggacaaatt |
108 |
Q |
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| T |
49230089 |
gattattcttgacaaaatatgaatgattctttcttcgaactgctctcatgatccaacatcaacatacatgcaattatttctatatttgactggacaaatt |
49229990 |
T |
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| Q |
109 |
ggaataggtgaaaatcatatctataatactagtacccttaaaaaataatatcacaccattaatacctttcttatgtttgtatgcttttttgaatcaacgg |
208 |
Q |
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| T |
49229989 |
ggaataggtgaaaatcatatctataatactagtacccttaaaaaataatatcacaccattaatacctttcttatgtttgtatgcttttttgaatcaacgg |
49229890 |
T |
|
| Q |
209 |
catttgttaaaaatgagtattttctttttaaatataggtgcaaattaaacgaactttgcaaaggtctaactaaaaccggatgttaag--------attgg |
300 |
Q |
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| T |
49229889 |
catttgttaaaaatgagtattttctttttaaatataggtgcaaattaaacgaactttgcaaaggtctaactaaaaccggatgttaagattgttagattgg |
49229790 |
T |
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| Q |
301 |
atattttatgtggtatttaattt |
323 |
Q |
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| T |
49229789 |
atattttatgtggtatttaattt |
49229767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 317 - 431
Target Start/End: Complemental strand, 49229650 - 49229535
Alignment:
| Q |
317 |
ttaatttcatgttaaatttgtgtttttccattttgtgtgaagggagtttgtaatttcgtctaa-aaaatatttttcccaaattttcaagcaaattaatga |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||| |
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| T |
49229650 |
ttaatttcatgttaaatttgtgtttttccattttgtgtgaagggagtttgtaatttcgtctaaaaaaatattttccccaatttttcaagcaaattaatga |
49229551 |
T |
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| Q |
416 |
aattcaatcaaagttc |
431 |
Q |
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| T |
49229550 |
aattcaatcaaagttc |
49229535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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