View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21645_low_3 (Length: 355)
Name: NF21645_low_3
Description: NF21645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21645_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 59 - 339
Target Start/End: Complemental strand, 28271256 - 28270976
Alignment:
| Q |
59 |
attttcaatttgtctagaacttacatataaaggaggtgtggtatcttgctaaaatcaggaattggtccttgcaagttgcaattcctaagggtcctaatag |
158 |
Q |
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| T |
28271256 |
attttcaatttgtctagaacttacatataaaggaggtgtggtatcttgctaaaatcaggaattggtccttgcaagttgcaattcctaagggtcctaatag |
28271157 |
T |
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| Q |
159 |
taccaagaaacaaacaacattgagatggtcaaactttactccaaacctttctcttatatagtatgagaaattaatcacaaagattttagcatctcaaatt |
258 |
Q |
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| T |
28271156 |
taccaagaaacaaacaacattgagatggtcaaactttactccaaacctttctcttatatagtatgagaaattaatcacaaagattttagcatctcaaatt |
28271057 |
T |
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| Q |
259 |
ggtacttcacacataaaaattaaaataaaagctctagaacttcaaatcaattccttcaacttgtaaaaacatgcaaaatct |
339 |
Q |
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| T |
28271056 |
ggtacttcacacataaaaattaaaataaaggctctagaacttcaaatcaattccttcaacttgcaaaaacatgcaaaatct |
28270976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 169
Target Start/End: Complemental strand, 28286197 - 28286103
Alignment:
| Q |
75 |
gaacttacatataaaggaggtgtggtatcttgctaaaatcaggaattggtccttgcaagttgcaattcctaagggtcctaatagtaccaagaaac |
169 |
Q |
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| T |
28286197 |
gaacttacagataaagaaggtgtggtatacggcttaagtcaggaatcggtccttgcaagttacagttcttaaggctcctgataatatcaagaaac |
28286103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 153
Target Start/End: Original strand, 32194391 - 32194452
Alignment:
| Q |
92 |
aggtgtggtatcttgctaaaatcaggaattggtccttgcaagttgcaattcctaagggtcct |
153 |
Q |
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| T |
32194391 |
aggtgtggtatcctgctgaaatcaggaattggtcctgtcaaattgcagttcctaaggctcct |
32194452 |
T |
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