View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21645_low_4 (Length: 297)
Name: NF21645_low_4
Description: NF21645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21645_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 9e-73; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 40556115 - 40555917
Alignment:
| Q |
1 |
ttctttttggtaacaaatttgatttaataaaaaatgttatttaatttgtttttctcaatctatatacataatatagcgcttgtttggacatttgacataa |
100 |
Q |
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| T |
40556115 |
ttctttttggtaacaaatttgatttaataaaaaatgttatttaatttgtttttctcaatctatatacataatacagcgcttgtttggacatttgacataa |
40556016 |
T |
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| Q |
101 |
tagtttatgaggttatttgctatannnnnnnngagaaaaaatcactt-nnnnnnnntaccacttctaagagtatcacatcagttgattttattttttct |
198 |
Q |
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| T |
40556015 |
tagtttatgaggttatttgctatattttttttgagaaaaaatcacttaaaaaaaaataccacttctaagagtatcacatcagttgattttattttttct |
40555917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 247 - 292
Target Start/End: Complemental strand, 40555868 - 40555823
Alignment:
| Q |
247 |
cttctaagagtatcacatctgttctccttttttcgtttcttctctc |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40555868 |
cttctaagagtatcacatctgttctccttttttcgtttcttttctc |
40555823 |
T |
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