View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21645_low_5 (Length: 292)
Name: NF21645_low_5
Description: NF21645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21645_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-147; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 3 - 277
Target Start/End: Complemental strand, 23177927 - 23177653
Alignment:
| Q |
3 |
tgctatgaattggaatagtagtatagttgttcaagccgtagctctgtttgaactccgctcggttcaaaacatcatgaaaagaaaaattggaactaccgtc |
102 |
Q |
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| T |
23177927 |
tgctatcaattggaatagtagtatagttgttcaagccgtagctctgtttgaactccgctcggttcaaaacatcatgaaaagaaaaattggaattaccgtc |
23177828 |
T |
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| Q |
103 |
aatccacaaaacatttgaacctttactaacagacagattcgcagagcgagaatcatattgaagggtatatggtcctgaagaggggtcgtctgtactcttc |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23177827 |
aatccacaaaacatttgaacctttactaacagacagattcgcagagcgagaatcatattgaagggtatatggtcctgaagaggggtcgtctgtactcttc |
23177728 |
T |
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| Q |
203 |
catgatctcaatgaccaagtgtgtcctatgtcagtatcgtagcctatgttcattccaggcaaaagggtatctgtg |
277 |
Q |
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| T |
23177727 |
catgatctcaatgaccaagtgtgtcctgtgtcagtatcgtagcctatgttcattccaggcaaaagggtatctgtg |
23177653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 103 - 273
Target Start/End: Complemental strand, 23186956 - 23186786
Alignment:
| Q |
103 |
aatccacaaaacatttgaacctttactaacagacagattcgcagagcgagaatcatattgaagggtatatggtcctgaagaggggtcgtctgtactcttc |
202 |
Q |
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| T |
23186956 |
aatccatacaacatttgaaccattactatcagatagatacccaaagccagaatcatagcgcagagtaaatggtcccgtggaggggtcgtctgtacgcttc |
23186857 |
T |
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| Q |
203 |
catgatctcaatgaccaagtgtgtcctatgtcagtatcgtagcctatgttcattccaggcaaaagggtatc |
273 |
Q |
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| T |
23186856 |
catgatctcaatgaccaagtacgtcctgtgtaagtatcgtgtcctaaggtcattccaggtaaaagggtatc |
23186786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 273
Target Start/End: Original strand, 21182232 - 21182304
Alignment:
| Q |
201 |
tccatgatctcaatgaccaagtgtgtcctatgtcagtatcgtagcctatgttcattccaggcaaaagggtatc |
273 |
Q |
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||||||||||||| ||| |||||| ||| ||| | |||||| || |||||||||||||| ||||||||||| |
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| T |
21182232 |
tccatgatctcaaagacaaagtgtaccctgtgttaatatcgtgtccgatgttcattccaggtaaaagggtatc |
21182304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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