View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21646_high_1 (Length: 929)
Name: NF21646_high_1
Description: NF21646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21646_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 7e-70; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 744 - 914
Target Start/End: Original strand, 17445822 - 17445990
Alignment:
| Q |
744 |
ttgcatgcacctgataacaagcaccacatcctctgccgccaaggaaaatagatggacctccagctgatatcattttagaaagtggaggattctctgcact |
843 |
Q |
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| T |
17445822 |
ttgcatgcacctgataacaagcaccacatcctctcccgccaaggaaaatagatggacctccagctgatatcattttagaaagtggaggattctctacact |
17445921 |
T |
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| Q |
844 |
atcaacatatccgcatgcaccccctacacacacaaaaaatcaatattttttacaagtatatacataaatct |
914 |
Q |
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| T |
17445922 |
ttcaacatatccacatgcaccccctacacaca-aaaaaatc-attttttttacaagtatatacataaatct |
17445990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 15 - 157
Target Start/End: Original strand, 17444299 - 17444441
Alignment:
| Q |
15 |
caaaggcagttccacttaaatcaaaatgtgcagattcacattcagggcaattatctgttatcaccacattcactggacttcctgagcatgcactattttc |
114 |
Q |
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| T |
17444299 |
caaaggcagttccacttaaatcaaaatgggcagattcacattcggggcaattatctgttatcaccacattcactggacttcctgagcatgcactattttc |
17444398 |
T |
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| Q |
115 |
ggtgcatttcacctgaaaatgtaaaattcaatattaaaatata |
157 |
Q |
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| T |
17444399 |
ggtgcatttcacctgaaaatgtaacatttaatattaaaatata |
17444441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 742 - 869
Target Start/End: Original strand, 9630556 - 9630683
Alignment:
| Q |
742 |
agttgcatgcacctgataacaagcaccacatcctctgccgccaaggaaaatagatggacctccagctgatatcattttagaaagtggaggattctctgca |
841 |
Q |
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| T |
9630556 |
agttacatgcacctgataacaagcaccacatcctctaccctcaaggaaaatagatggacctccagctgatatcattttagaaagtggaggatactctata |
9630655 |
T |
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| Q |
842 |
ctatcaacatatccgcatgcacccccta |
869 |
Q |
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| T |
9630656 |
ctttcaccatatccacatgcacccccta |
9630683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 474 - 551
Target Start/End: Original strand, 17444547 - 17444626
Alignment:
| Q |
474 |
aaattagtttcttaaaactgtttcataaaatacctcttatta----tctatttttataaataagtatatcatctgtaaccag |
551 |
Q |
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| T |
17444547 |
aaattagtttcttaaaactgtttcataaaatacctcttattatctctctatttttataaacaag--tatcatctgtaaccag |
17444626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 9630176 - 9630295
Alignment:
| Q |
15 |
caaaggcagttccacttaaatcaaaatgtgcagattcacattcagggcaattatctgttatcaccacattcactggacttcctgagcatgcactattttc |
114 |
Q |
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| T |
9630176 |
caaatgcagttccacttagatcaaactggataggtgcacatccagggcaactatcagtgatcatcacagtcacaggatttcttgagcatgcactattttc |
9630275 |
T |
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| Q |
115 |
ggtgcatttcacctgaaaat |
134 |
Q |
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| T |
9630276 |
tgtgcatttcacctgaaaat |
9630295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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