View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21646_high_4 (Length: 317)
Name: NF21646_high_4
Description: NF21646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21646_high_4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 14 - 317
Target Start/End: Complemental strand, 40405085 - 40404785
Alignment:
| Q |
14 |
gaaccacataacagcattgatagttaaaaagaaggacaagaaaaatggcatgtattcaacgctccttgaccttatgactttgctctgcatggaaggaaat |
113 |
Q |
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| T |
40405085 |
gaaccacataacagcattgatagttaaaaagaaggacaagaaaaatggcatgtattcaacgctccttgaccttatgactttgctctgcatggaaggaaat |
40404986 |
T |
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| Q |
114 |
catcataaaaaatatttatttaattatcatcatttgctcatttaattgggaaaaaataaattaagaatacttacaatgacgaagagaggtgcagcaaata |
213 |
Q |
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| T |
40404985 |
catcataaaaattatttatttaattatcat---ttgctcatttaattgggaaaaaataaattaagaatacttacaatgacgaagagaggtgcagcaaata |
40404889 |
T |
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| Q |
214 |
cacttatgttgaaaacaaggcaaatccatccaatgatagcaaaacgtttttctccctttgaaaggtagagcgttgatagaagcatggcaccaaactcaaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||| |||||| |||| |
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| T |
40404888 |
cacttatgttgaaaacaaggcaaatccatccaatgatagcaagacgttttgctccctttgaaaggtagagagttgatagaagcatggctccaaacccaaa |
40404789 |
T |
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| Q |
314 |
caca |
317 |
Q |
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|||| |
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| T |
40404788 |
caca |
40404785 |
T |
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