View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21646_low_2 (Length: 402)
Name: NF21646_low_2
Description: NF21646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21646_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 9 - 385
Target Start/End: Complemental strand, 40404734 - 40404363
Alignment:
| Q |
9 |
aaattaattagtacaattttaaaattagtgtaaacttatttatgagcttaaaagaaatatgtataccctttgtttctttggggcataaattaggaacatt |
108 |
Q |
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| T |
40404734 |
aaataaattagtacaattttaaaattagtgtaaacttatttatgagcttaaaagaaatatgtataccctttgtttctttggggcataaattaggaacatt |
40404635 |
T |
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| Q |
109 |
ataatgtaagctgattcaacaacaattccaaaagtgttaatggtgatgagaagaagagcagattctcttttgacaaatgcatagtagatccaaagcattg |
208 |
Q |
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| T |
40404634 |
ataatgtaagctgattcaacaacaattccaaaagtgttaatggtgatgagaagaagagcagattctcttttgacaaatgcatagtagatccaaagcattg |
40404535 |
T |
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| Q |
209 |
cactgaaaagtgccacaacataaggaagtgcctgaaatccttcagcagatttcttcttgaagattacgtaaaaagttggcctgcaannnnnnnnnnnnnn |
308 |
Q |
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| T |
40404534 |
cactgaaaagtgccacaacataaggaagtgcctgaaatccttcagcagatttcttcttgaagattacgtaaaaagttggcctgcaa----------atat |
40404445 |
T |
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| Q |
309 |
nnnnncgtttaggaaatta-----tcacttcactttgttcaattaatttacaagaaaacaaaatggttacttacaatggtga |
385 |
Q |
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| T |
40404444 |
atatacgtttagtaaattatcacttcacttcactttgttcaattaatttacaagaaaacaaaatggttacttacaatggtga |
40404363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 176 - 293
Target Start/End: Complemental strand, 45317749 - 45317632
Alignment:
| Q |
176 |
ttttgacaaatgcatagtagatccaaagcattgcactgaaaagtgccacaacataaggaagtgcctgaaatccttcagcagatttcttcttgaagattac |
275 |
Q |
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|||||||| |||||| |||||||||||||||||||| || | ||| ||||||||||| || ||||| ||||||| ||||||||||||| ||||| |
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| T |
45317749 |
ttttgacatgtgcataatagatccaaagcattgcactcaacaatgcagtaacataaggaactgattgaaacccttcagtagatttcttcttgtagattcg |
45317650 |
T |
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| Q |
276 |
gtaaaaagttggcctgca |
293 |
Q |
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| T |
45317649 |
gtaaaatgttggtctgca |
45317632 |
T |
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