View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21646_low_5 (Length: 295)
Name: NF21646_low_5
Description: NF21646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21646_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 5416383 - 5416126
Alignment:
| Q |
18 |
ctttgtatagcatgaaacaaaatcataaactaagcagaaaccaaccgtgtattaacaattaatacaaatattcaaagatctcaaaatatgaaagatctta |
117 |
Q |
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| T |
5416383 |
ctttgtatagcatgaaacaaaatcataaactaagcagaaaccaaccgtgcattaacaattaatacaaatattcaaagatctcaaaatatgaaagatctta |
5416284 |
T |
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| Q |
118 |
ttctctcactttacttacatttattttaaacaacttttttaaaaaagttgaaatatgatacattattagtgaatagtgtatattttcttggagtttaaac |
217 |
Q |
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| T |
5416283 |
ttatctcactttacttacatt-------aacaactttttttaaaaagttgaaatatgatacattattagtgaatagtgtatattttcttggagtttaaaa |
5416191 |
T |
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| Q |
218 |
tatagctaaggtacactgttctgagacccaattaagtacaaagttagcactaaaattcttcttct |
282 |
Q |
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| T |
5416190 |
tatagctaaggtacactgttctgagacccaattaagtacaaagttagcactaaaattcttcttct |
5416126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 5435415 - 5435351
Alignment:
| Q |
23 |
tatagcatgaaacaaaatcataaactaagcagaaaccaaccgtgtattaacaattaatacaaatat |
88 |
Q |
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| T |
5435415 |
tataggatgaaacaaa-tcataaactaagcagaaaccaaccgtgcattagcggttaatataaatat |
5435351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 278
Target Start/End: Complemental strand, 5433921 - 5433867
Alignment:
| Q |
224 |
taaggtacactgttctgagacccaattaagtacaaagttagcactaaaattcttc |
278 |
Q |
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| T |
5433921 |
taaggtacattgttctgagaccacgttaagttcaaagttagcactaaagttcttc |
5433867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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