View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21647_high_1 (Length: 240)
Name: NF21647_high_1
Description: NF21647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21647_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 53463595 - 53463426
Alignment:
| Q |
20 |
agtcccgtaactatatgaaagaacatttgatatattagtgtatgagttcaaacctacctttgcacagttctcaacatttcatgtgtataaatttcgttac |
119 |
Q |
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| T |
53463595 |
agtcccgtaactatatgaaagaacatttgatatattagtgtatgagttcaaacctacctttgcacagttctcaacatttcatgtggataaatttcgttac |
53463496 |
T |
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| Q |
120 |
tctttgttgcc-nnnnnnnngatcaataaggttttaattttctttaaagaaatatatattttttacaaga |
188 |
Q |
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| T |
53463495 |
tctttgttaccaaaaaaaaagatcaataaggttttaattttctttaaagaaatatatattttttacaaga |
53463426 |
T |
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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 186 - 240
Target Start/End: Complemental strand, 53463363 - 53463309
Alignment:
| Q |
186 |
agacctaagatgttctattagcccaatttccttaagtaatcaataattgtaataa |
240 |
Q |
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| T |
53463363 |
agacctaagatgttctattagcccaatttccttaagtaatcaataattgtaataa |
53463309 |
T |
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