View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21647_high_16 (Length: 323)

Name: NF21647_high_16
Description: NF21647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21647_high_16
NF21647_high_16
[»] chr7 (6 HSPs)
chr7 (20-323)||(18395922-18396234)
chr7 (75-134)||(27073633-27073692)
chr7 (75-134)||(27204621-27204680)
chr7 (25-87)||(23565300-23565363)
chr7 (27-128)||(40808414-40808517)
chr7 (25-121)||(36146661-36146759)
[»] chr8 (8 HSPs)
chr8 (27-142)||(11712244-11712361)
chr8 (40-121)||(32902442-32902524)
chr8 (40-118)||(29796578-29796656)
chr8 (92-173)||(7597380-7597462)
chr8 (92-142)||(8153572-8153622)
chr8 (65-118)||(3232092-3232145)
chr8 (65-142)||(8863333-8863409)
chr8 (66-114)||(18141659-18141706)
[»] chr2 (4 HSPs)
chr2 (27-142)||(4560904-4561021)
chr2 (65-109)||(28671797-28671841)
chr2 (25-110)||(11067134-11067221)
chr2 (40-114)||(36773387-36773462)
[»] scaffold0129 (1 HSPs)
scaffold0129 (41-121)||(19854-19933)
[»] chr4 (6 HSPs)
chr4 (65-180)||(21704109-21704225)
chr4 (65-180)||(3739397-3739511)
chr4 (27-114)||(6677306-6677394)
chr4 (40-121)||(36463657-36463738)
chr4 (75-118)||(4587792-4587835)
chr4 (87-120)||(43208174-43208207)
[»] chr1 (5 HSPs)
chr1 (40-114)||(8871315-8871390)
chr1 (70-126)||(2263271-2263327)
chr1 (40-116)||(28265821-28265898)
chr1 (92-140)||(25116407-25116455)
chr1 (25-91)||(49918210-49918278)
[»] chr5 (1 HSPs)
chr5 (65-139)||(5611451-5611524)
[»] chr3 (5 HSPs)
chr3 (65-139)||(21156738-21156811)
chr3 (65-118)||(40519479-40519532)
chr3 (65-118)||(2075350-2075403)
chr3 (70-114)||(9666754-9666797)
chr3 (65-121)||(37761765-37761820)


Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-141; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 20 - 323
Target Start/End: Complemental strand, 18396234 - 18395922
Alignment:
Q  20 acatcatcaaagacattcaacctaaagttacctccttgatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataa 119  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  18396234 acatcaccaaagacattcaacctaaagttacctccttgatatccaaagtttctctctcttgaagctctacttaaaacatgaagaatgaagtcttatataa 18396135  T
Q  120 tgcacaagtcccgagaaaatcgtatcacaattttcactaattgtgccacgatttcaagttacttaaaatcgttccacgattttcctctttcgtgccacaa 219  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18396134 tgcacaagttccgagaaaatcgtatcacaattttcactaattgtgccacgatttcaagttacttaaaatcgttccacgattttcctctttcgtgccacaa 18396035  T
Q  220 tttttcgaatcaaa---------accttaaccaaaatcgcgtcacgatttttgcaaatcacggcccaatttttgtcgatattttagacaaatttcaacat 310  Q
    ||||||||||||||         ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  18396034 tttttcgaatcaaaacctccaaaaccttaaccaaaatctcgtcacgatttttgcaaatcgcggcccaatttttgtcgattttttagacaaatttcaacat 18395935  T
Q  311 ttgttttccttga 323  Q
    |||||||||||||    
T  18395934 ttgttttccttga 18395922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 134
Target Start/End: Complemental strand, 27073692 - 27073633
Alignment:
Q  75 ctcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaagtcccgag 134  Q
    |||||||||  |||| |||||| |||||||||||||||||||||||||| ||| ||||||    
T  27073692 ctcttgaagtcctacctaaaacttgaagaatgaagtcttatataatgcaaaagccccgag 27073633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 134
Target Start/End: Original strand, 27204621 - 27204680
Alignment:
Q  75 ctcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaagtcccgag 134  Q
    |||||||||  |||| |||||| |||||||||||||||||||||||||| ||| ||||||    
T  27204621 ctcttgaagtcctacctaaaacttgaagaatgaagtcttatataatgcaaaagccccgag 27204680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 23565300 - 23565363
Alignment:
Q  25 atcaaagacattcaacctaaagttacctcctt-gatacccaaagtttctcactcttgaagctct 87  Q
    |||||||||  | ||||||||||||||||||| |||| || ||||||||| |||||||||||||    
T  23565300 atcaaagacccttaacctaaagttacctcctttgatatcccaagtttctctctcttgaagctct 23565363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 128
Target Start/End: Complemental strand, 40808517 - 40808414
Alignment:
Q  27 caaagacattcaacc-taaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcac 124  Q
    |||||||| |||||| ||||||||||||||| ||| | | |||||| || ||||| |||  ||||||| |||||||||||||||||  ||||||  ||||    
T  40808517 caaagacactcaaccctaaagttacctcctttgattctctaagtttatctctctttaagtcctacttataacatgaagaatgaagttctatatagagcac 40808418  T
Q  125 aagt 128  Q
    ||||    
T  40808417 aagt 40808414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 121
Target Start/End: Original strand, 36146661 - 36146759
Alignment:
Q  25 atcaaagacattcaac-ctaaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatg 121  Q
    |||||||||  ||||| |||||||||||||||| |||  || |||||| || ||||||||||||| |  |||| ||||||||||||| |||| ||||||    
T  36146661 atcaaagaccctcaacactaaagttacctcctttgatttcccaagtttttctctcttgaagctcttcccaaaaaatgaagaatgaagccttaaataatg 36146759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 27 - 142
Target Start/End: Original strand, 11712244 - 11712361
Alignment:
Q  27 caaagacattcaacc-taaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcac 124  Q
    |||||||| |||||| |||||||||||| || ||||||| ||||||||| ||||||||||||||| |||||||| |||||||||  |||||||| |||||    
T  11712244 caaagacactcaaccctaaagttacctcatttgataccctaagtttctctctcttgaagctctacctaaaacataaagaatgaaaccttatatagtgcac 11712343  T
Q  125 aagtcccgagaaaatcgt 142  Q
    | ||||| ||||||||||    
T  11712344 atgtcccaagaaaatcgt 11712361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 40 - 121
Target Start/End: Original strand, 32902442 - 32902524
Alignment:
Q  40 cctaaagttacctcct-tgatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatg 121  Q
    |||||||||||||| | ||||  || ||||||||| |||||||||| || || ||||||||||||||||||||||||| ||||    
T  32902442 cctaaagttacctcatctgatttcccaagtttctctctcttgaagccctcctcaaaacatgaagaatgaagtcttatacaatg 32902524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 118
Target Start/End: Original strand, 29796578 - 29796656
Alignment:
Q  40 cctaaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatata 118  Q
    ||||||||||||||||| |||  |  ||||||||| ||||||||| ||| || |||||||||||||||||| ||||||||    
T  29796578 cctaaagttacctcctttgatttctcaagtttctctctcttgaag-tctcctcaaaacatgaagaatgaagccttatata 29796656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 173
Target Start/End: Complemental strand, 7597462 - 7597380
Alignment:
Q  92 aaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaa-tcgtatcacaattttcactaattgtgccacgattt 173  Q
    |||||||||||||||||| |||||||| ||| ||| || |||||||| | ||  | | |||||||| ||||||||||||||||    
T  7597462 aaaacatgaagaatgaagccttatatagtgctcaaatctcgagaaaaattgtgccccgattttcaccaattgtgccacgattt 7597380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 142
Target Start/End: Complemental strand, 8153622 - 8153572
Alignment:
Q  92 aaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaatcgt 142  Q
    |||||||||||||||||| ||| ||||||| |||||  |||||||||||||    
T  8153622 aaaacatgaagaatgaagccttttataatgtacaagatccgagaaaatcgt 8153572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 3232092 - 3232145
Alignment:
Q  65 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatata 118  Q
    ||||||||  ||||| | |||||||| |||||||||||||||||| ||||||||    
T  3232092 aagtttctttctcttaatgctctactcaaaacatgaagaatgaagccttatata 3232145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 142
Target Start/End: Complemental strand, 8863409 - 8863333
Alignment:
Q  65 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaatcgt 142  Q
    |||||| || |||||||||||| ||  |||||||||||||||||| |||||||| |||||| |  | |||||||||||    
T  8863409 aagtttttctctcttgaagctc-acccaaaacatgaagaatgaagccttatatagtgcacatgatctgagaaaatcgt 8863333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 18141706 - 18141659
Alignment:
Q  66 agtttctcactcttgaagctctacttaaaacatgaagaatgaagtctta 114  Q
    |||||||| |||||||||||||||| |||| ||||||||||||| ||||    
T  18141706 agtttctctctcttgaagctctactcaaaa-atgaagaatgaagcctta 18141659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 27 - 142
Target Start/End: Complemental strand, 4561021 - 4560904
Alignment:
Q  27 caaagacattcaac-ctaaagttacctcct-tgatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcac 124  Q
    |||||||| ||||| ||||||||| ||||| ||||  || |||||| || ||||||||| | | || ||||||||||||||||||||||||| |||||||    
T  4561021 caaagacactcaactctaaagttatctcctctgatttcctaagtttttctctcttgaagttattctaaaaacatgaagaatgaagtcttatacaatgcac 4560922  T
Q  125 aagtcccgagaaaatcgt 142  Q
    ||||||||||||||||||    
T  4560921 aagtcccgagaaaatcgt 4560904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 28671841 - 28671797
Alignment:
Q  65 aagtttctcactcttgaagctctacttaaaacatgaagaatgaag 109  Q
    ||||||||| |||||||||| ||||| ||||||||||||||||||    
T  28671841 aagtttctctctcttgaagccctactcaaaacatgaagaatgaag 28671797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 110
Target Start/End: Complemental strand, 11067221 - 11067134
Alignment:
Q  25 atcaaagacattcaacc-taaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagt 110  Q
    |||||||||| |||||| ||||||||||||||| |||  ||  |||||||| |||||||||| || || |||| ||||||||||||||    
T  11067221 atcaaagacaatcaaccataaagttacctcctttgatttccctagtttctctctcttgaagccctcctcaaaaaatgaagaatgaagt 11067134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 114
Target Start/End: Complemental strand, 36773462 - 36773387
Alignment:
Q  40 cctaaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtctta 114  Q
    ||||||||||||||||| |||  ||  |||||||| ||||||||||||||   |||| ||||||||||||||||||    
T  36773462 cctaaagttacctcctttgatttccctagtttctctctcttgaagctctatacaaaaaatgaagaatgaagtctta 36773387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 121
Target Start/End: Original strand, 19854 - 19933
Alignment:
Q  41 ctaaagttacctccttgatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatg 121  Q
    |||||||||||||||||||  || ||||||| | |||||||||| ||||| |||||| ||||||||||||| |||||||||    
T  19854 ctaaagttacctccttgatttcccaagtttcactctcttgaagc-ctactcaaaacaagaagaatgaagtcatatataatg 19933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 65 - 180
Target Start/End: Original strand, 21704109 - 21704225
Alignment:
Q  65 aagtttctcactcttgaagc-tctacttaaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaatcgtatcacaattttcactaattgt 163  Q
    ||||||||| |||||||||| |||||  |||||||||| |||||||||||| ||| |||||| |||| |  ||||||||  | |||||||  ||||| ||    
T  21704109 aagtttctctctcttgaagcctctacacaaaacatgaaaaatgaagtcttaaatagtgcacatgtcctgtcaaaatcgtgccccaattttacctaatcgt 21704208  T
Q  164 gccacgatttcaagtta 180  Q
    |||||||||||| ||||    
T  21704209 gccacgatttcacgtta 21704225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 180
Target Start/End: Original strand, 3739397 - 3739511
Alignment:
Q  65 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaatcgtatcacaattttcactaattgtg 164  Q
    ||||||||| ||||||||  | |||| ||||||||||||||||||||||| |||||||||| ||||||  ||||||||  | | |||| |||  ||| ||    
T  3739397 aagtttctctctcttgaaa-tgtactcaaaacatgaagaatgaagtcttaaataatgcacatgtcccgtcaaaatcgtgcctcgatttacacacattttg 3739495  T
Q  165 ccacgatttcaagtta 180  Q
    ||||||||||| ||||    
T  3739496 ccacgatttcacgtta 3739511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 114
Target Start/End: Complemental strand, 6677394 - 6677306
Alignment:
Q  27 caaagacattcaacc-taaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtctta 114  Q
    |||||||| |||||| ||||||||||||||| ||||||| || ||||||  ||||||||| ||||| |||||||||||||||||| ||||    
T  6677394 caaagacactcaaccctaaagttacctcctttgataccctaaatttctctttcttgaagc-ctactcaaaacatgaagaatgaagcctta 6677306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 121
Target Start/End: Original strand, 36463657 - 36463738
Alignment:
Q  40 cctaaagttacctcct-tgatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatg 121  Q
    |||||||||||||||| ||||  || |||||| || |||||||||||||||| |||| ||||||||||||| |||| ||||||    
T  36463657 cctaaagttacctcctatgatttcccaagtttttctctcttgaagctctactcaaaa-atgaagaatgaagccttaaataatg 36463738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 75 - 118
Target Start/End: Complemental strand, 4587835 - 4587792
Alignment:
Q  75 ctcttgaagctctacttaaaacatgaagaatgaagtcttatata 118  Q
    ||||||||||||| || |||||||||||||||||||||| ||||    
T  4587835 ctcttgaagctctcctcaaaacatgaagaatgaagtcttttata 4587792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 120
Target Start/End: Original strand, 43208174 - 43208207
Alignment:
Q  87 tacttaaaacatgaagaatgaagtcttatataat 120  Q
    |||| |||||||||||||||||||||||||||||    
T  43208174 tactcaaaacatgaagaatgaagtcttatataat 43208207  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 114
Target Start/End: Original strand, 8871315 - 8871390
Alignment:
Q  40 cctaaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtctta 114  Q
    ||||||||||||| ||| |||| ||  |||||||| |||||||||||||||  |||||||||||||||||| ||||    
T  8871315 cctaaagttacctgctttgatatccctagtttctctctcttgaagctctaccaaaaacatgaagaatgaagcctta 8871390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 2263271 - 2263327
Alignment:
Q  70 tctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaa 126  Q
    |||| ||||||| |||||||  |||||||||||||||||| |||||||| |||||||    
T  2263271 tctctctcttgacgctctacacaaaacatgaagaatgaagccttatatagtgcacaa 2263327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 116
Target Start/End: Original strand, 28265821 - 28265898
Alignment:
Q  40 cctaaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttata 116  Q
    ||||||||||||||||| |||  ||  |||||||| ||||||||||||| |  |||| ||||||||||||| ||||||    
T  28265821 cctaaagttacctcctttgatttccctagtttctctctcttgaagctcttcccaaaaaatgaagaatgaagccttata 28265898  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 25116455 - 25116407
Alignment:
Q  92 aaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaatc 140  Q
    |||||||||||||||||| |||||||| |||||| | || |||||||||    
T  25116455 aaaacatgaagaatgaagacttatatagtgcacatgacctgagaaaatc 25116407  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 49918278 - 49918210
Alignment:
Q  25 atcaaagacattcaacc-taaagttacctcctt-gatacccaaagtttctcactcttgaagctctactt 91  Q
    ||||||||| ||||||| ||||||||||||||| |||  || ||||||||| ||||| |||||||||||    
T  49918278 atcaaagaccttcaaccctaaagttacctcctttgatttcccaagtttctctctcttcaagctctactt 49918210  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 139
Target Start/End: Original strand, 5611451 - 5611524
Alignment:
Q  65 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaat 139  Q
    ||||||||| |||||||||||||  | ||||||||||||||||||||||| || ||| ||||| | |||||||||    
T  5611451 aagtttctctctcttgaagctctt-tcaaaacatgaagaatgaagtcttaaattatgtacaagactcgagaaaat 5611524  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 139
Target Start/End: Original strand, 21156738 - 21156811
Alignment:
Q  65 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaat 139  Q
    ||||||||| |||||||||||||  | ||||||||||||||||||||||| || ||| ||||| | |||||||||    
T  21156738 aagtttctctctcttgaagctctt-tcaaaacatgaagaatgaagtcttaaattatgtacaagactcgagaaaat 21156811  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 40519479 - 40519532
Alignment:
Q  65 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatata 118  Q
    ||||||||| |||||||||||||||| || |||||| |||||||| ||||||||    
T  40519479 aagtttctctctcttgaagctctactcaatacatgatgaatgaagccttatata 40519532  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 2075350 - 2075403
Alignment:
Q  65 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatata 118  Q
    ||||||||| ||||||||||   ||| |||||||||||||||||| ||||||||    
T  2075350 aagtttctctctcttgaagcctcactcaaaacatgaagaatgaagccttatata 2075403  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 9666754 - 9666797
Alignment:
Q  70 tctcactcttgaagctctacttaaaacatgaagaatgaagtctta 114  Q
    |||| |||||||||||||||| |||| ||||||||||||||||||    
T  9666754 tctctctcttgaagctctactcaaaa-atgaagaatgaagtctta 9666797  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 121
Target Start/End: Original strand, 37761765 - 37761820
Alignment:
Q  65 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatg 121  Q
    ||||| ||| |||||||||| | ||| |||||||||||||| |||||||||||||||    
T  37761765 aagttactctctcttgaagc-caactaaaaacatgaagaataaagtcttatataatg 37761820  T

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