View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21647_high_9 (Length: 352)
Name: NF21647_high_9
Description: NF21647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21647_high_9 |
 | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
| [»] scaffold0479 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 33807948 - 33808288
Alignment:
| Q |
1 |
gagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattccca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33807948 |
gagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattccca |
33808047 |
T |
|
| Q |
101 |
ttattattatagtggagatttaagaggcttacggatcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtcatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33808048 |
ttattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt--tgtgtcatt |
33808145 |
T |
|
| Q |
201 |
ttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaatagtggtatcagagcactcgttgctctgggactc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
33808146 |
ttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaacagtggtatcagagcactcgttgctctgggacta |
33808245 |
T |
|
| Q |
301 |
tgaattttcgtatctgcaagataattcttagtatgctctgtgg |
343 |
Q |
| |
|
||| ||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
33808246 |
tgagttttcgtatatgcaagataattcttaatatgctctgtgg |
33808288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 33811602 - 33811942
Alignment:
| Q |
1 |
gagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattccca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811602 |
gagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattccca |
33811701 |
T |
|
| Q |
101 |
ttattattatagtggagatttaagaggcttacggatcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtcatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33811702 |
ttattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt--tgtgtcatt |
33811799 |
T |
|
| Q |
201 |
ttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaatagtggtatcagagcactcgttgctctgggactc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
33811800 |
ttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaacagtggtatcagagcactcgttgctctgggacta |
33811899 |
T |
|
| Q |
301 |
tgaattttcgtatctgcaagataattcttagtatgctctgtgg |
343 |
Q |
| |
|
||| ||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
33811900 |
tgagttttcgtatatgcaagataattcttaatatgctctgtgg |
33811942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 33816520 - 33816783
Alignment:
| Q |
1 |
gagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattccca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816520 |
gagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattccca |
33816619 |
T |
|
| Q |
101 |
ttattattatagtggagatttaagaggcttacggatcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtcatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33816620 |
ttattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt--tgtgtcatt |
33816717 |
T |
|
| Q |
201 |
ttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaa |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33816718 |
ttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaa |
33816783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 185
Target Start/End: Complemental strand, 22763955 - 22763905
Alignment:
| Q |
136 |
tcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt |
185 |
Q |
| |
|
||||||||||||||| || |||| ||||||||||||||||| ||||||||| |
|
|
| T |
22763955 |
tcccgtggtttttccctttctcatattgagaaggttttccatgctaaaatt |
22763905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 31152194 - 31151928
Alignment:
| Q |
1 |
gagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattccca |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31152194 |
gagtgtgagagaaaaatatagtaagccaatttgtgagagttgtatctataaatttagatacgtagttaggtccatctgagggtgaagatttgtattccca |
31152095 |
T |
|
| Q |
101 |
ttattattatagtggagatttaagaggcttacggatcccgtggt-ttttccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtcat |
199 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
31152094 |
ttattattatagtggagatttaagaggcctacggatcccgtggtttttttcttactcacattgagaaggttttccacattaaaattttgttgtgtgtcat |
31151995 |
T |
|
| Q |
200 |
tttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaa |
266 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
31151994 |
tttatgtttccgctaaagtgcctattttgagttcagagaggagggaaattatgcaggcatttcccaa |
31151928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 9 - 192
Target Start/End: Complemental strand, 1111564 - 1111378
Alignment:
| Q |
9 |
gagaaaaatatagtgagccaatttgtgagagttgtatcta--caaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattatta |
106 |
Q |
| |
|
|||||||||||| || ||||||||||||| | |||||| ||||||||||||||||||||||| || | |||||||| ||||||||| |||||||| |
|
|
| T |
1111564 |
gagaaaaatataaggaaccaatttgtgagaaatatatctatacaaattgagatacatagttaggtttacgtaagggtgaaagtttgtattctcattatta |
1111465 |
T |
|
| Q |
107 |
tta-tagtggagatttaagaggcttacggatcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgt |
192 |
Q |
| |
|
||| || | ||||||||||| |||| | |||| || |||||||||| | ||||| ||||||||||| || ||||||||||||||| |
|
|
| T |
1111464 |
ttattatagtagatttaagagacttatgagtcccatgatttttccttatttacattcagaaggttttctacactaaaattttgttgt |
1111378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 71 - 266
Target Start/End: Original strand, 22981504 - 22981708
Alignment:
| Q |
71 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacggatcccgtggtttttcc-ttactcacattgagaag |
167 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||| ||||||||||| | |||||||||| | || ||||||||||||||| || |||||||||||||| |
|
|
| T |
22981504 |
tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaag |
22981603 |
T |
|
| Q |
168 |
gttttccacgctaaaattttgttgtgt-------gtcatttt--acgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggca |
258 |
Q |
| |
|
|||||||||||||||||| | ||||| | ||||| ||||||||||| ||||||| ||||||||||||||||| ||||||||| |||| || |
|
|
| T |
22981604 |
gttttccacgctaaaattct-ctgtgtcattacgcttatttttcacgtttccgct--agtgcctgttttgagttcacggaggggggaaattatgcagtca |
22981700 |
T |
|
| Q |
259 |
tttcccaa |
266 |
Q |
| |
|
|||||||| |
|
|
| T |
22981701 |
tttcccaa |
22981708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 71 - 266
Target Start/End: Complemental strand, 23806904 - 23806700
Alignment:
| Q |
71 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacggatcccgtggtttttcc-ttactcacattgagaag |
167 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||| ||||||||||| | |||||||||| | || ||||||||||||||| || |||||||||||||| |
|
|
| T |
23806904 |
tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaag |
23806805 |
T |
|
| Q |
168 |
gttttccacgctaaaattttgttgtgt-------gtcatttt--acgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggca |
258 |
Q |
| |
|
|||||||||||||||||| | ||||| | ||||| ||||||||||| ||||||| ||||||||||||||||| ||||||||| |||| || |
|
|
| T |
23806804 |
gttttccacgctaaaattct-ctgtgtcattacgcttatttttcacgtttccgct--agtgcctgttttgagttcacggaggggggaaattatgcagtca |
23806708 |
T |
|
| Q |
259 |
tttcccaa |
266 |
Q |
| |
|
|||||||| |
|
|
| T |
23806707 |
tttcccaa |
23806700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 5 - 266
Target Start/End: Original strand, 50603138 - 50603401
Alignment:
| Q |
5 |
gtgagagaaaaatatagtgagccaatttgt--gagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccatt |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| || | |||||||||||||||||||||| |
|
|
| T |
50603138 |
gtgagagaaaaatatagtgagccaatttgtatgagagttgtatctacaaattgagatatatagttaggtccatctaaaggtgaagatttgtattcccatt |
50603237 |
T |
|
| Q |
103 |
attattatagtggagatttaagaggcttacggatcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtcatttt |
202 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
50603238 |
attattatagtggagatttaagaggcctacgggttccgtggttttttcttactcacattgagaaggttttccacgctaaaattttattgtgtgtcatttt |
50603337 |
T |
|
| Q |
203 |
acgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaa |
266 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||||| |||||| | |||||||||||| |
|
|
| T |
50603338 |
acgttttcgctaaagtgtctattttgagttcacggaggagagaaattgtactggcatttcccaa |
50603401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 251 - 343
Target Start/End: Complemental strand, 54972200 - 54972108
Alignment:
| Q |
251 |
agcaggcatttcccaatagtggtatcagagcactcgttgctctgggactctgaattttcgtatctgcaagataattcttagtatgctctgtgg |
343 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| ||| | |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
54972200 |
agcaggcatttcccaacagtggtatcagagcactcgttgctctgggactgtgaggtatcgtatctgcaagatagttcttagtatgctctgtgg |
54972108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 54967477 - 54967212
Alignment:
| Q |
18 |
atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata |
111 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| | ||| || || ||||||| ||||||||| | ||||||||||||||| |||||| |
|
|
| T |
54967477 |
atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattata |
54967378 |
T |
|
| Q |
112 |
gtggagattt--aagaggcttacggatcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaattttgttgtgtgtc----------- |
197 |
Q |
| |
|
||||| ||| ||||||| | || ||||||||||||||| || |||| ||||||||||||||||||||||||||| | || |||||| |
|
|
| T |
54967377 |
gtggaagtttttaagaggcccaagggtcccgtggtttttccctttctcatattgagaaggttttccacgctaaaattctctt-tgtgtcattacgctttt |
54967279 |
T |
|
| Q |
198 |
attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaa |
266 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
54967278 |
atttcacgtttccgct--agtgcctattttgagttgacggaggagggaaattatgcaggcatttcccaa |
54967212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 71 - 266
Target Start/End: Complemental strand, 44782733 - 44782526
Alignment:
| Q |
71 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacggatcccgtggttttt--ccttactcacattgagaa |
166 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||||| | || ||||||||||||| |||| |||| |||||||| |
|
|
| T |
44782733 |
tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccgtggttttttccctttctcatattgagaa |
44782634 |
T |
|
| Q |
167 |
ggttttccacgctaaaattttgttgtgtgtc-----------attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcag |
255 |
Q |
| |
|
||||||||||||||||||| | || |||||| |||| ||||||||||| |||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
44782633 |
ggttttccacgctaaaattctctt-tgtgtcattacgtttatatttcacgtttccgct--agtgtctattttgagttcacggaggagggaaattatgcag |
44782537 |
T |
|
| Q |
256 |
gcatttcccaa |
266 |
Q |
| |
|
||||||||||| |
|
|
| T |
44782536 |
gcatttcccaa |
44782526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 71 - 344
Target Start/End: Complemental strand, 18556511 - 18556230
Alignment:
| Q |
71 |
tccacctgagggtgaagat-ttgtattcccattattattatagtggagatttaagaggcttacggatcccgtggttttt--ccttactcacattgagaag |
167 |
Q |
| |
|
||||||| ||||||||| | |||||||| |||| | ||||||||||| ||||||||||| || ||||||||||||| |||| |||| ||||||||| |
|
|
| T |
18556511 |
tccacctaagggtgaagttgttgtattctcattgtcattatagtggaagtttaagaggctcgagggtcccgtggttttttgcctttctcagattgagaag |
18556412 |
T |
|
| Q |
168 |
gttttccacgctaaaattttgttgtgtgtcatt-----------ttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcagg |
256 |
Q |
| |
|
|||||||||||||||||||| | |||||||| | ||||||| ||| || ||||||||||||||| |||||||| |||||| | ||| |
|
|
| T |
18556411 |
gttttccacgctaaaattttat---gtgtcattacgcttatatttcacgtttctgctg--gtacctattttgagttcatggaggaggcaaattatgtagg |
18556317 |
T |
|
| Q |
257 |
catttcccaatagtggtatcagagcactcgttgctctgggactctgaattttcgtatctgcaagataattcttagtatgctctgtggt |
344 |
Q |
| |
|
|||||||| |||||||||| |||||||||| || ||||||| || | |||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
18556316 |
tgtttcccaacagtggtatcaaagcactcgtttctatgggactatg-ggtgtcgtatctgcaagataattctttgtatgctatgtggt |
18556230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 39298736 - 39298908
Alignment:
| Q |
18 |
atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata |
111 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||| | ||| ||||| ||||||| ||||||||| | |||||||||| |||| |||||| |
|
|
| T |
39298736 |
atagtgagccaatttgtgagagt-gtccttacaaattgagagatatattgtagttagatccacctaagggtgaagttgttgtattccctttatcattata |
39298834 |
T |
|
| Q |
112 |
gtggagatttaagaggcttacggatcccgtggtttttccttactcacattgagaaggttttccacgctaaaatt |
185 |
Q |
| |
|
||||| |||||||||| | || ||||||| ||||||||| |||||||||||||||||| ||| |||||||| |
|
|
| T |
39298835 |
gtggaagtttaagaggcacaagggtcccgtgatttttccttcatcacattgagaaggtttttcacactaaaatt |
39298908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 266
Target Start/End: Complemental strand, 31725448 - 31725200
Alignment:
| Q |
12 |
aaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattata |
111 |
Q |
| |
|
||||||||||| | |||||||||||| |||| |||||||||||||||||| || |||||||||| || |||||||||||||||| ||||||| ||||| |
|
|
| T |
31725448 |
aaaaatatagttaatcaatttgtgagaattgt--ctacaaattgagatacatcgtaaggtccacctaagtgtgaagatttgtattctcattattgttata |
31725351 |
T |
|
| Q |
112 |
gtggagatttaagaggcttacggatcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtcattttacgtttccg |
211 |
Q |
| |
|
|||| | |||| | || ||| |||||||||||||| || ||| ||||||||||||| ||||| || || |||| ||| || |||||||| |
|
|
| T |
31725350 |
ttggatgtctaagggatctatagattgtttggtttttccttacccatgttgtgaaggttttccacactaaactt---ttttgtggcatatt-cgtttccg |
31725255 |
T |
|
| Q |
212 |
ctaaagtgccta-ttttgagttcacggaggagggaaattaagcaggcatttcccaa |
266 |
Q |
| |
|
||||| |||||| |||||| ||||||||| ||| ||||| |||| |||||||||| |
|
|
| T |
31725254 |
ctaaa-tgcctatttttgaattcacggagaaggtgaattatgcagacatttcccaa |
31725200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 71 - 256
Target Start/End: Complemental strand, 54980051 - 54979854
Alignment:
| Q |
71 |
tccacctgagggtgaagat-ttgtattcccattattattatagtggagattt--aagaggcttacggatcccgtggtttttcc-ttactcacattgagaa |
166 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||| ||||||||||| ||| ||||||| | || ||||||||||||||| || |||| |||||||| |
|
|
| T |
54980051 |
tccacctaagggtgaagttgttgtattcccattatcattatagtggaagtttttaagaggcccaagggtcccgtggtttttccctttctcatattgagaa |
54979952 |
T |
|
| Q |
167 |
ggttttccacgctaaaattttgttgtgtgtc-----------attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcag |
255 |
Q |
| |
|
||||||||| ||||||||| | || |||||| |||| ||||||||||| ||||| ||||||||||| ||||||||||||||||| |||| |
|
|
| T |
54979951 |
ggttttccatgctaaaattctctt-tgtgtcattacacttttatttcacgtttccgct--agtgcttattttgagttgacggaggagggaaattatgcag |
54979855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 189
Target Start/End: Original strand, 17645800 - 17645897
Alignment:
| Q |
90 |
ttgtattcccattattattatagtggagatttaagaggcttacggatcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt |
189 |
Q |
| |
|
||||||| |||||| ||||||||||| ||||||| ||| | | ||||||||||||| || | | ||||||||||||||||||||||||||||||| |
|
|
| T |
17645800 |
ttgtattgtcattatcattatagtggaagtttaagacgctcaagagtcccgtggttttttttt--ttatattgagaaggttttccacgctaaaattttgt |
17645897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 71 - 343
Target Start/End: Complemental strand, 4842857 - 4842573
Alignment:
| Q |
71 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacggatcccgtggttttt--ccttactcacattgagaa |
166 |
Q |
| |
|
||||||| ||||||||| | ||||||||| ||||| ||||||||||| | |||||||||| | || ||| ||||||||| |||| ||||||||||||| |
|
|
| T |
4842857 |
tccacctaagggtgaagttgttgtattcctattatcattatagtggaagttttaagaggcccaagggtcctgtggttttttccctttctcacattgagaa |
4842758 |
T |
|
| Q |
167 |
ggttttccacgctaaaattttgttgtgtgtcatt-----------ttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcag |
255 |
Q |
| |
|
||||||||||||||||||| | || ||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4842757 |
ggttttccacgctaaaattctctt-tgtgtcattacacttatatttcacgtttccgcta--gtgcctattttgagttcacggaggagggaaattatgcag |
4842661 |
T |
|
| Q |
256 |
gcatttcccaatagtggtatcagagcactcgttgctctgggactctgaattttcgtatctgcaagataattcttagtatgctctgtgg |
343 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| | ||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4842660 |
gcatttcccaacagtggtatcagagcactcgttgctctgggattgtgaggtgtcgtatctgcaagataattcttagtatgctctgtgg |
4842573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 25857395 - 25857133
Alignment:
| Q |
18 |
atagtgagccaatttgtgagagttgtatctacaaatt--gagatacat---agttaggtccacctgagggtgaagat-ttgtattcccattattattata |
111 |
Q |
| |
|
||||||||||||||||||||||| | |||||||| |||||| || ||| || ||||||| | ||||||| | ||||||||||||||| |||||| |
|
|
| T |
25857395 |
atagtgagccaatttgtgagagtgttccttacaaattaagagatatattgtagtgagatccacctaaaggtgaagttgttgtattcccattatcattata |
25857296 |
T |
|
| Q |
112 |
gtgga-gatttaagaggcttacggatcccgtggtttttcctta-ctcacattgagaaggttttccacgctaaaattttgttgtgtgtc-----------a |
198 |
Q |
| |
|
||||| | |||||||||| | || ||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||| | |
|
|
| T |
25857295 |
gtggaagttttaagaggcccaagggtcccgtggtttttccttttctcacattgagaaggttttccacgctaaaatt---ctctgtgtcattacgcttata |
25857199 |
T |
|
| Q |
199 |
ttttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaa |
266 |
Q |
| |
|
||| ||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25857198 |
tttcacgtttccgct--agtgcctattttaagttcacggaggagggaaattatgcaggcatttcccaa |
25857133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 4835840 - 4835577
Alignment:
| Q |
18 |
atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata |
111 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| | ||| || || ||||||| ||||||||| | ||| ||||||||||| |||||| |
|
|
| T |
4835840 |
atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgcattcccattatcattata |
4835741 |
T |
|
| Q |
112 |
gtgga-gatttaagaggcttacggatcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaattttgt-tgt------gtgt-catt |
200 |
Q |
| |
|
||||| | |||||||||| | || ||||||||||||| |||| |||||||||||||||||||||||||||||||| | | ||| || | ||| |
|
|
| T |
4835740 |
gtggaagttttaagaggcccaagggtcccgtggttttttccctttctcacattgagaaggttttccacgctaaaattctctgtgtcattacgtttatatt |
4835641 |
T |
|
| Q |
201 |
ttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaa |
266 |
Q |
| |
|
| |||||||| || ||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
4835640 |
tcacgtttccact--agtgcctattttgagttcatggaggagggaaattatgcaggcatttcccaa |
4835577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 13465165 - 13465046
Alignment:
| Q |
71 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacggatcccgtggtttttcc-ttactcacattgagaag |
167 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||| ||||||||||| | |||||||||| | || ||| ||||||||||| || |||||||||||||| |
|
|
| T |
13465165 |
tccacctgagggtgaacttgttgtattcccattatcattatagtggatgttttaagaggcccaagggtcctgtggtttttccctttctcacattgagaag |
13465066 |
T |
|
| Q |
168 |
gttttccacgctaaaatttt |
187 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
13465065 |
gttttccacgctaaaatttt |
13465046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 177
Target Start/End: Complemental strand, 8252853 - 8252686
Alignment:
| Q |
8 |
agagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagataca----tagttaggtccacctgagggtgaagatttgtattcccatta |
103 |
Q |
| |
|
|||||||||||||||||| |||||| ||| ||||||||||||||||||||||||| || ||| ||||| || | | ||||| ||||||||||| ||| |
|
|
| T |
8252853 |
agagaaaaatatagtgagtcaatttatgatagttgtatctacaaattgagatacataattaattaagtccatctaaagatgaagctttgtattcccgtta |
8252754 |
T |
|
| Q |
104 |
ttattatagtggagatttaagaggcttacggatcccgtggtttttccttactcacattgagaaggttttccacg |
177 |
Q |
| |
|
|||||| | || || ||||||| |||||| ||||| | |||||||||| |||||||||||||||||| |
|
|
| T |
8252753 |
ttattacattgaggagttaagagacttacgagtcccg------taccttactcacgttgagaaggttttccacg |
8252686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 185
Target Start/End: Complemental strand, 24379487 - 24379370
Alignment:
| Q |
71 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacggatcccgtggtttttcc-ttactcacattgagaag |
167 |
Q |
| |
|
||||||| ||||||||| | ||||||||| ||||| ||||||||||| | |||||||||| | ||||||||||||||||| || |||||||||||||| |
|
|
| T |
24379487 |
tccacctaagggtgaagttgttgtattcctattatcattatagtggaagttttaagaggcccaaagatcccgtggtttttccctttctcacattgagaag |
24379388 |
T |
|
| Q |
168 |
gttttccacgctaaaatt |
185 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
24379387 |
gttttccacgttaaaatt |
24379370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 90 - 185
Target Start/End: Complemental strand, 27341120 - 27341025
Alignment:
| Q |
90 |
ttgtattcccattattattatagtggagatttaagaggcttacggatcccgtggtttttccttactcacattgagaaggttttccacgctaaaatt |
185 |
Q |
| |
|
||||||| ||||||| ||| |||| || ||||||||| | || ||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
27341120 |
ttgtatttccattatcattgtagtagaagtttaagaggtacaagggtcccgtggtttttcctttcttacattgagaaggttttccacgctaaaatt |
27341025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 194
Target Start/End: Original strand, 17845847 - 17845969
Alignment:
| Q |
73 |
cacctgagggtgaagat-ttgtattcccattattattatagtggagatttaagaggcttacggatcccgtggtttttccttactcacattgagaaggttt |
171 |
Q |
| |
|
||||| ||||||||| | ||||||| ||||||| ||||||||||| ||||||||| | | ||| ||||||||||||| ||||||||| |||||||| |
|
|
| T |
17845847 |
cacctaagggtgaagttgttgtatttccattatcattatagtggaagtttaagaggtccaaaggtcctgtggtttttccttcctcacattgggaaggttt |
17845946 |
T |
|
| Q |
172 |
tccacgctaaaattttgttgtgt |
194 |
Q |
| |
|
||||| |||||||| | |||||| |
|
|
| T |
17845947 |
tccactctaaaattctcttgtgt |
17845969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 218 - 266
Target Start/End: Original strand, 24380113 - 24380161
Alignment:
| Q |
218 |
tgcctattttgagttcacggaggagggaaattaagcaggcatttcccaa |
266 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
24380113 |
tgcctattttgagttcacagaggagggaaattatgcaggcatttcccaa |
24380161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 119 - 185
Target Start/End: Complemental strand, 38994218 - 38994151
Alignment:
| Q |
119 |
tttaagaggcttacggatcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt |
185 |
Q |
| |
|
||||||||||| || ||||||||||||||| || ||| |||||||||||||||||||| ||||||| |
|
|
| T |
38994218 |
tttaagaggctcgagggtcccgtggtttttccctttctcgcattgagaaggttttccacgttaaaatt |
38994151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 114; Significance: 9e-58; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 53 - 266
Target Start/End: Complemental strand, 29707069 - 29706856
Alignment:
| Q |
53 |
ttgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcttacggatcccgtggtttttcctt |
152 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| | | |||||||||||||||||||||||||||||| || | ||||||| || |||||| |
|
|
| T |
29707069 |
ttgagatacatagttaggtccacccgagggtgaagattttttattccattattattatagtggagatttaagaggtctatgagtcccgtgattgttcctt |
29706970 |
T |
|
| Q |
153 |
actcacattgagaaggttttccacgctaaaattttgttgtgtgtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaag |
252 |
Q |
| |
|
||||| |||||||||||||||| | ||||||||||||||||||||||||||| ||| |||||||||| |||||| |||||||||| ||| ||||||| | |
|
|
| T |
29706969 |
actcatattgagaaggttttcctcactaaaattttgttgtgtgtcattttacatttttgctaaagtgcatattttaagttcacggatgagagaaattatg |
29706870 |
T |
|
| Q |
253 |
caggcatttcccaa |
266 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
29706869 |
gaggcattttccaa |
29706856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 185
Target Start/End: Original strand, 27642132 - 27642225
Alignment:
| Q |
93 |
tattcccattattattatagtggagatttaagaggcttacggatcccgtg-gtttttccttactcacattgagaaggttttccacgctaaaatt |
185 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| | ||| |||||| ||||||||| ||||||||||||||||||| ||||| |||||| |
|
|
| T |
27642132 |
tattcccattattattatagtggaagtttaagagacccgaggaccccgtgattttttcctttctcacattgagaaggttttacacgccaaaatt |
27642225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 8e-52; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 18 - 343
Target Start/End: Complemental strand, 9757480 - 9757138
Alignment:
| Q |
18 |
atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata |
111 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| | ||| || || ||||||| ||||||||| | ||||||||||||||| |||||| |
|
|
| T |
9757480 |
atagtgagccaatttgtgagagtgttccttacaaattgagagatatattatagtgagatccacctaagggtgaagttgttgtattcccattatcattata |
9757381 |
T |
|
| Q |
112 |
gtggagattt---aagaggcttacggatcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaattttgttgtgtgtcatt------- |
200 |
Q |
| |
|
||||| ||| ||||||| | || ||||||||||||||| || |||||||||||||||||||||||||||||||| | || ||||||||| |
|
|
| T |
9757380 |
gtggaagttttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaaggttttccacgctaaaattctctt-tgtgtcattacgctta |
9757282 |
T |
|
| Q |
201 |
----ttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaatagtggtatcagagcactcgttgctctggg |
296 |
Q |
| |
|
| |||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||| |||| |||||||||||||| || |||||| |||| |
|
|
| T |
9757281 |
tatttcacgtttccgcta--gtgcctattttgagttcacggaggaaggaaattatgcaggcatttaccaacagtggtatcagagc-ctggttgctttggg |
9757185 |
T |
|
| Q |
297 |
actctgaattttcgtatctgcaagataattcttagtatgctctgtgg |
343 |
Q |
| |
|
||| ||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
9757184 |
actgtgaggtgtcgtatctgcaagataattcttagtatgctctgtgg |
9757138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 90 - 187
Target Start/End: Complemental strand, 37287069 - 37286972
Alignment:
| Q |
90 |
ttgtattcccattattattatagtggagatttaagaggcttacggatcccgtggtttttccttactcacattgagaaggttttccacgctaaaatttt |
187 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||| ||||| || ||||||| ||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
37287069 |
ttgtattcttattattattatagtggaagtttaagatgcttaagggtcccgtgatttttcctttttcacattgagaaggttttccatgctaaaatttt |
37286972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 73 - 185
Target Start/End: Complemental strand, 42683038 - 42682924
Alignment:
| Q |
73 |
cacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacggatcccgtggtttttccttactcacattgagaaggtt |
170 |
Q |
| |
|
||||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||||| | || ||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
42683038 |
cacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccgtgatttttcctttctcacattgagaaggtt |
42682939 |
T |
|
| Q |
171 |
ttccacgctaaaatt |
185 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
42682938 |
ttccacgctgaaatt |
42682924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 25003069 - 25003037
Alignment:
| Q |
135 |
atcccgtggtttttccttactcacattgagaag |
167 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |
|
|
| T |
25003069 |
atcccgtggtttttccttattcacattgagaag |
25003037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 90 - 340
Target Start/End: Complemental strand, 342404 - 342145
Alignment:
| Q |
90 |
ttgtattcccattattattatagtgga-gatttaagaggcttacggatcccgtggttt-ttcc-ttactcacattgagaaggttttccacgctaaaattt |
186 |
Q |
| |
|
||||||||||||||| ||||||||||| | |||||||||| | |||||||||||||| |||| || |||| |||||||||||||| |||||||||||| |
|
|
| T |
342404 |
ttgtattcccattatcattatagtggaagttttaagaggcccaaggatcccgtggtttcttccatttctcatattgagaaggtttttcacgctaaaattc |
342305 |
T |
|
| Q |
187 |
tgttgtgtgtc---------attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaatagtggtatca |
277 |
Q |
| |
|
| |||||| |||| ||||||| |||| ||||||||||||||||||||||||||| |||||| |||||||||| |||| |||||||||| |
|
|
| T |
342304 |
t-ttgtgtcattacgcttatatttcacgtttctgcta--gtgcctattttgagttcacggaggaggaaaattatgcaggcattttccaacagtggtatca |
342208 |
T |
|
| Q |
278 |
gagcactcgttgctctgggactctgaattttcgtatctgcaagataattcttagtatgctctg |
340 |
Q |
| |
|
|||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
342207 |
gagcactcgttgctctgggactgtgaggtgtcgtatctgcaagataattcttagtatgctctg |
342145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 26752 - 26516
Alignment:
| Q |
18 |
atagtgagccaatttgtgagagttgtatctacaaattgagataca-----tagttaggtccacctgagggtgaag-atttgtattcccattattattata |
111 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| | | |||| || ||||||| |||||| || | |||||||| | |||| |||| | |
|
|
| T |
26752 |
atagtgagccaatttgtgagagtgttccttacaaattgagagataaattgtagtgagatccacctaagggtggagtagttgtattctcgttatcattaga |
26653 |
T |
|
| Q |
112 |
gtggagatttaagaggcttacggatcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtcattttacgtttccg |
211 |
Q |
| |
|
||||| |||||||||| | || |||||| ||||||||||||||||||||| |||||||||||| ||||||||||||| |||| ||||||||||| || |
|
|
| T |
26652 |
gtggaagtttaagaggcccaagggtcccgtagtttttccttactcacattgaaaaggttttccaccctaaaattttgtt--gtgttattttacgttttcg |
26555 |
T |
|
| Q |
212 |
ctaaagtgcctattttgagttcacggaggagggaaatta |
250 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||| |||| |
|
|
| T |
26554 |
ctaaagtgtctattttgagttcacgaaggagggagatta |
26516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 7e-31; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 41481548 - 41481813
Alignment:
| Q |
18 |
atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata |
111 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| | ||| || || ||||||| ||||||||| | ||||||||||||||| |||||| |
|
|
| T |
41481548 |
atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattata |
41481647 |
T |
|
| Q |
112 |
gtgga-gatttaagaggcttacggatcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtc----------- |
197 |
Q |
| |
|
||||| | |||||||||| | || ||||||||||||| |||| |||| ||||||||||||||||||||||||||| | || |||||| |
|
|
| T |
41481648 |
gtggaagttttaagaggcccaagggtcccgtggttttttccctttctcatattgagaaggttttccacgctaaaattctctt-tgtgtcattacgtttat |
41481746 |
T |
|
| Q |
198 |
attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaa |
266 |
Q |
| |
|
|||| ||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
41481747 |
atttcacgtttccgct--agtgtctattttgagttcacggaggagggaaattatgcaggcatttcccaa |
41481813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 36167547 - 36167811
Alignment:
| Q |
18 |
atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata |
111 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| | ||| || || ||||||| ||||||||| | ||||||||||||||| |||||| |
|
|
| T |
36167547 |
atagtgagccaatttgtgagagtgttccttacaaattgagagatatattatagtgagatccacctaagggtgaagttgttgtattcccattatcattata |
36167646 |
T |
|
| Q |
112 |
gtgga-gatttaagaggcttacggatcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtcatt-------- |
200 |
Q |
| |
|
||||| | |||||||||| | || ||| ||||||||| |||| |||| ||||||||||||||||||||||||||| | || ||||||||| |
|
|
| T |
36167647 |
gtggaagttttaagaggcccaagggtcc-gtggttttttccctttctcatattgagaaggttttccacgctaaaattctctt-tgtgtcattacgtttat |
36167744 |
T |
|
| Q |
201 |
---ttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaa |
266 |
Q |
| |
|
| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
36167745 |
atttcacgtttccgcta--gtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaa |
36167811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 263
Target Start/End: Complemental strand, 18951326 - 18951129
Alignment:
| Q |
74 |
acctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacggatcccgtggttttt--ccttactcacattgagaaggt |
169 |
Q |
| |
|
|||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||| || | | || |||||||||| |||| |||||||||||||||| |
|
|
| T |
18951326 |
acctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaagcccaaaggtctcgtggttttttccctttctcacattgagaaggt |
18951227 |
T |
|
| Q |
170 |
tttccacgctaaaattttgttgtgtgtc------attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcc |
263 |
Q |
| |
|
|||||| ||||||||| ||| | | |||| | |||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
18951226 |
tttccatgctaaaattctgtgtcattacgcttatatttcatgtttccgcta--gtgcctattttgagttcacggaggaggcaaattatgcaggcatttcc |
18951129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 71 - 266
Target Start/End: Original strand, 2727 - 2934
Alignment:
| Q |
71 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacggatcccgtggttttt--ccttactcacattgagaa |
166 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||| ||||||||||| | |||||||||| | || ||||||||||||| |||| ||||||||||||| |
|
|
| T |
2727 |
tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggttttttccctttctcacattgagaa |
2826 |
T |
|
| Q |
167 |
ggttttccacgctaaaattttgttgtgtgtc-----------attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcag |
255 |
Q |
| |
|
||||||||||||||||||| | || |||||| |||| ||||||||||| |||| ||||||||||||||||||| |||||||||| ||| |
|
|
| T |
2827 |
ggttttccacgctaaaattctctt-tgtgtcattacgcttatatttcacgtttccgct--agtgtctattttgagttcacggagaagggaaattatgcat |
2923 |
T |
|
| Q |
256 |
gcatttcccaa |
266 |
Q |
| |
|
||||||||||| |
|
|
| T |
2924 |
gcatttcccaa |
2934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 90 - 183
Target Start/End: Original strand, 37037942 - 37038035
Alignment:
| Q |
90 |
ttgtattcccattattattatagtggagatttaagaggcttacggatcccgtggtttttccttactcacattgagaaggttttccacgctaaaa |
183 |
Q |
| |
|
|||||||| |||||| |||||||| | |||||||||| | || ||||||||||| ||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
37037942 |
ttgtattctcattatcgttatagtgaaagtttaagaggcccaagggtcccgtggtttctcctttctcacattgagaaggttttcctcgctaaaa |
37038035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 250
Target Start/End: Original strand, 37038074 - 37038108
Alignment:
| Q |
216 |
agtgcctattttgagttcacggaggagggaaatta |
250 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |
|
|
| T |
37038074 |
agtgcctattttgagttcacggaggagagaaatta |
37038108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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