View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21647_low_1 (Length: 612)

Name: NF21647_low_1
Description: NF21647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21647_low_1
NF21647_low_1
[»] chr2 (26 HSPs)
chr2 (146-612)||(14769234-14769701)
chr2 (1-146)||(14770041-14770187)
chr2 (146-466)||(452495-452822)
chr2 (141-466)||(8179869-8180203)
chr2 (146-380)||(2609695-2609931)
chr2 (146-466)||(24584485-24584812)
chr2 (146-380)||(45368504-45368741)
chr2 (146-317)||(16291943-16292116)
chr2 (95-146)||(2610274-2610325)
chr2 (146-276)||(38453497-38453628)
chr2 (283-357)||(39287849-39287923)
chr2 (284-360)||(6464948-6465024)
chr2 (98-142)||(45368112-45368156)
chr2 (92-145)||(17581215-17581268)
chr2 (98-142)||(452110-452154)
chr2 (98-142)||(4807342-4807386)
chr2 (98-142)||(11992594-11992638)
chr2 (98-146)||(38453108-38453156)
chr2 (98-142)||(41197716-41197760)
chr2 (202-265)||(37281388-37281451)
chr2 (92-142)||(3865822-3865872)
chr2 (111-142)||(8180530-8180561)
chr2 (98-142)||(3244139-3244183)
chr2 (225-336)||(13148533-13148645)
chr2 (114-146)||(24584110-24584142)
chr2 (281-380)||(33251482-33251579)
[»] chr7 (32 HSPs)
chr7 (146-466)||(33350685-33351012)
chr7 (146-466)||(36651070-36651397)
chr7 (146-466)||(39907258-39907585)
chr7 (146-380)||(46356730-46356966)
chr7 (146-466)||(32629688-32630011)
chr7 (146-360)||(36870203-36870419)
chr7 (146-380)||(38606206-38606441)
chr7 (281-466)||(22346588-22346778)
chr7 (146-346)||(11593154-11593356)
chr7 (281-466)||(38896693-38896883)
chr7 (190-380)||(24178119-24178310)
chr7 (281-364)||(33738342-33738425)
chr7 (283-364)||(32483656-32483737)
chr7 (146-266)||(49028563-49028684)
chr7 (192-362)||(48055743-48055913)
chr7 (98-142)||(11593710-11593754)
chr7 (287-370)||(17101504-17101588)
chr7 (98-142)||(36651744-36651788)
chr7 (98-142)||(38606755-38606799)
chr7 (395-466)||(11592765-11592835)
chr7 (98-142)||(31004973-31005017)
chr7 (98-142)||(33350294-33350338)
chr7 (98-146)||(34869166-34869214)
chr7 (98-142)||(36869777-36869821)
chr7 (98-142)||(37616666-37616710)
chr7 (98-142)||(43281426-43281470)
chr7 (98-142)||(46356339-46356383)
chr7 (98-142)||(48919138-48919182)
chr7 (92-146)||(418891-418945)
chr7 (112-142)||(35906703-35906733)
chr7 (253-333)||(21520321-21520402)
chr7 (94-146)||(21517809-21517861)
[»] chr4 (31 HSPs)
chr4 (146-466)||(23907181-23907508)
chr4 (146-466)||(435308-435635)
chr4 (202-466)||(48623463-48623733)
chr4 (149-369)||(55769265-55769486)
chr4 (149-369)||(55833521-55833742)
chr4 (146-357)||(53703800-53704013)
chr4 (146-466)||(1777894-1778223)
chr4 (201-361)||(39707650-39707810)
chr4 (205-380)||(27451112-27451288)
chr4 (98-146)||(33226955-33227003)
chr4 (297-362)||(33369027-33369092)
chr4 (222-340)||(44860318-44860435)
chr4 (98-142)||(1777503-1777547)
chr4 (280-380)||(16002175-16002274)
chr4 (98-142)||(23906789-23906833)
chr4 (323-371)||(41598166-41598214)
chr4 (98-146)||(46583312-46583360)
chr4 (111-146)||(31960315-31960350)
chr4 (319-357)||(2296364-2296402)
chr4 (211-351)||(41427046-41427188)
chr4 (226-271)||(41005617-41005662)
chr4 (98-142)||(435979-436023)
chr4 (98-142)||(27450661-27450705)
chr4 (98-142)||(43433668-43433712)
chr4 (98-142)||(48174581-48174625)
chr4 (98-142)||(48623015-48623059)
chr4 (98-142)||(53707544-53707588)
chr4 (98-142)||(56375040-56375084)
chr4 (109-142)||(50286721-50286754)
chr4 (110-142)||(35690055-35690087)
chr4 (287-339)||(42037115-42037167)
[»] chr1 (25 HSPs)
chr1 (146-466)||(43241260-43241587)
chr1 (191-380)||(8671085-8671278)
chr1 (146-466)||(51441643-51441970)
chr1 (147-466)||(49348274-49348608)
chr1 (183-464)||(29173446-29173733)
chr1 (202-360)||(32405400-32405558)
chr1 (201-359)||(34828020-34828179)
chr1 (201-380)||(45833727-45833907)
chr1 (146-380)||(35829272-35829506)
chr1 (98-146)||(43240869-43240917)
chr1 (146-276)||(37463741-37463872)
chr1 (98-142)||(22089844-22089888)
chr1 (98-142)||(49347881-49347925)
chr1 (98-146)||(51441252-51441300)
chr1 (95-142)||(32083230-32083277)
chr1 (98-142)||(1210495-1210539)
chr1 (204-311)||(7813732-7813840)
chr1 (98-142)||(8671670-8671714)
chr1 (98-142)||(9592484-9592528)
chr1 (418-466)||(11681897-11681945)
chr1 (98-142)||(30202618-30202662)
chr1 (98-142)||(51601808-51601852)
chr1 (98-137)||(8391525-8391564)
chr1 (92-142)||(19936272-19936322)
chr1 (92-146)||(51234360-51234414)
[»] scaffold0018 (2 HSPs)
scaffold0018 (144-466)||(30544-30873)
scaffold0018 (98-142)||(31218-31262)
[»] chr5 (29 HSPs)
chr5 (146-466)||(24177600-24177927)
chr5 (146-466)||(20318067-20318394)
chr5 (146-466)||(2076353-2076680)
chr5 (309-462)||(27039-27196)
chr5 (282-356)||(17212459-17212533)
chr5 (146-266)||(1288468-1288589)
chr5 (146-253)||(1274560-1274668)
chr5 (190-301)||(3301095-3301207)
chr5 (98-146)||(20318737-20318785)
chr5 (146-235)||(12493241-12493331)
chr5 (282-363)||(37123755-37123836)
chr5 (98-142)||(1275015-1275059)
chr5 (98-142)||(10639047-10639091)
chr5 (98-142)||(12492875-12492919)
chr5 (283-353)||(30418593-30418662)
chr5 (92-146)||(36200528-36200582)
chr5 (98-142)||(3394460-3394504)
chr5 (98-146)||(24178270-24178318)
chr5 (98-142)||(28977345-28977389)
chr5 (419-466)||(1288687-1288734)
chr5 (27-146)||(3096922-3097041)
chr5 (199-253)||(7605754-7605809)
chr5 (419-466)||(25937173-25937220)
chr5 (92-146)||(20077299-20077353)
chr5 (289-347)||(31503071-31503129)
chr5 (317-363)||(35685042-35685088)
chr5 (98-142)||(2075962-2076006)
chr5 (98-142)||(3301599-3301643)
chr5 (98-142)||(34272772-34272816)
[»] chr8 (20 HSPs)
chr8 (146-380)||(36566120-36566356)
chr8 (201-372)||(15216207-15216378)
chr8 (146-466)||(36544228-36544555)
chr8 (201-466)||(42854948-42855221)
chr8 (98-146)||(4032982-4033030)
chr8 (320-380)||(6184827-6184887)
chr8 (98-142)||(36565729-36565773)
chr8 (92-131)||(10824570-10824609)
chr8 (283-357)||(11130955-11131029)
chr8 (309-363)||(25984734-25984788)
chr8 (92-142)||(37077515-37077565)
chr8 (92-141)||(43732355-43732404)
chr8 (98-142)||(39946607-39946651)
chr8 (98-142)||(42854492-42854536)
chr8 (419-470)||(41445401-41445452)
chr8 (92-142)||(30113678-30113728)
chr8 (95-144)||(13589188-13589237)
chr8 (280-348)||(30579237-30579305)
chr8 (98-142)||(36544902-36544946)
chr8 (211-251)||(39706872-39706912)
[»] chr3 (15 HSPs)
chr3 (146-466)||(51448588-51448915)
chr3 (146-380)||(52137995-52138231)
chr3 (152-357)||(48220971-48221178)
chr3 (190-339)||(9258095-9258244)
chr3 (201-361)||(38849288-38849441)
chr3 (319-364)||(50630373-50630418)
chr3 (98-142)||(25191129-25191173)
chr3 (98-146)||(47542199-47542247)
chr3 (194-261)||(19736502-19736569)
chr3 (95-142)||(30345277-30345324)
chr3 (98-142)||(28245187-28245231)
chr3 (98-142)||(38849844-38849888)
chr3 (194-261)||(19757320-19757387)
chr3 (101-139)||(52138553-52138591)
chr3 (98-142)||(51448197-51448241)
[»] chr6 (19 HSPs)
chr6 (146-379)||(9705943-9706178)
chr6 (202-466)||(5260184-5260454)
chr6 (201-372)||(6082575-6082747)
chr6 (146-380)||(20428516-20428752)
chr6 (202-380)||(30670061-30670234)
chr6 (283-462)||(3629346-3629530)
chr6 (92-146)||(33495943-33495997)
chr6 (309-358)||(2681480-2681529)
chr6 (98-142)||(607909-607953)
chr6 (98-142)||(5631568-5631612)
chr6 (282-359)||(2208419-2208496)
chr6 (177-246)||(2680958-2681027)
chr6 (98-142)||(5258638-5258682)
chr6 (98-142)||(9706526-9706570)
chr6 (98-140)||(14030558-14030600)
chr6 (98-142)||(10100345-10100389)
chr6 (320-380)||(10864675-10864735)
chr6 (98-138)||(20428124-20428164)
chr6 (98-142)||(30679224-30679268)
[»] scaffold0113 (1 HSPs)
scaffold0113 (146-444)||(13135-13442)
[»] scaffold0045 (1 HSPs)
scaffold0045 (309-466)||(90134-90296)
[»] scaffold0171 (1 HSPs)
scaffold0171 (219-380)||(5614-5778)
[»] scaffold0570 (1 HSPs)
scaffold0570 (98-142)||(2758-2802)
[»] scaffold0286 (1 HSPs)
scaffold0286 (282-359)||(518-595)


Alignment Details
Target: chr2 (Bit Score: 444; Significance: 0; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 146 - 612
Target Start/End: Complemental strand, 14769701 - 14769234
Alignment:
Q  146 ttgacccttggtgcaatcatattgttttcggaaattgtcggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagct 245  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  14769701 ttgacccttggtgcaatcatattgttttgggaaattgtcggtggccccatcccgtgtcctcacactagttgatgctctctcatacatatcattgatagct 14769602  T
Q  246 ccaatataaacaatcttaacctttttcttcttattgctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtg 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14769601 ccaatataaacaatcttaacctttttcttcttattgctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtg 14769502  T
Q  346 caagtcttttttatccatccaatatcgttccatcagataagtagatcacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaa 445  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14769501 caagtcttttttatccatccaatatcgttccatcagataagtagatcacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaa 14769402  T
Q  446 tcaagtctcttttcttagtctcca-taaatcatcatttgataccgtaagttataagttcaaacgttgcttaaagtagcatgtcaaaattcgctataatct 544  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  14769401 tcaagtctcttttcttagtctccattaaatcaccatttgataccgtaagttataagttcaaaggttgcttaaagtagcatgtcaaaattcgctataatct 14769302  T
Q  545 agtgaagaaacattataaactcattagagaatgaccttactttgagcatacaagttcatgcgctataa 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14769301 agtgaagaaacattataaactcattagagaatgaccttactttgagcatacaagttcatgcgctataa 14769234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 14770187 - 14770041
Alignment:
Q  1 tcttaaccactcaatgctctcttccatacaacatcgccggttttacaattgttcaataaaatttacccttaatttgagaggtattaccatttcacataaa 100  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14770187 tcttaaccactcaacgctctgttccatacaacatcgccggttttacaattgttcaataaaatttacccttaatttgagaggtattaccatttcacataaa 14770088  T
Q  101 acaccttagactcttctccatttcaacca-cccagcttgaatatgat 146  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||    
T  14770087 acaccttacactcttctccatttcaaccaccccagcttgaatatgat 14770041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 146 - 466
Target Start/End: Original strand, 452495 - 452822
Alignment:
Q  146 ttgacccttggtgcaatcatattgttttcggaaattgt-cggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagc 244  Q
    |||||||||||||||||| ||||||| | ||||| | | |||| | | ||||| | |||||||||||||| ||| ||| |||||||||||  ||||||||    
T  452495 ttgacccttggtgcaatcctattgttatgggaaaatcttcggtagtctcatcctgcgtcctcacactagtcgaacctccctcatacatattcttgatagc 452594  T
Q  245 tccaatataaacaatcttaacctttttcttcttattg-ctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaag 343  Q
     | ||||||  ||||| |||||  ||||||||    | ||||||||||||||||||| | |||| |||| |||| ||| ||||||||||||||||| |||    
T  452595 cctaatataggcaatcctaacccctttcttctcccgggctttccacaaaatctctctcggtactctatcgtacgccttttccaaatcaatgaaaactaag 452694  T
Q  344 tgcaagtcttttttatccatccaatatcgttccatca------ga--taagtagatcacgcttccatagttgacctcccaaaacataaaaccaaattggt 435  Q
    |||||||||||||||||| ||| |||||| |||||||      ||  |||||||||   ||||||||||| |||||||| |  |||||||||||||||||    
T  452695 tgcaagtcttttttatccgtccgatatcgctccatcacgcgtcgaagtaagtagat--tgcttccatagtcgacctccc-aggcataaaaccaaattggt 452791  T
Q  436 tatcagtaaatcaagtctcttttcttagtct 466  Q
    |||| |||| || |||||| |||||||||||    
T  452792 tatccgtaactcgagtctcctttcttagtct 452822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 141 - 466
Target Start/End: Complemental strand, 8180203 - 8179869
Alignment:
Q  141 tatgattgacccttggtgcaatcatattgttttcggaaattgt-cggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattg 239  Q
    |||| ||||||||||| |||||| ||||||| | ||||| | | |||| |  |||||| | | |||||||||||| ||||||| ||| |||||||| |||    
T  8180203 tatggttgacccttggcgcaatcctattgttatgggaaaatcttcggtagttccatcctgcgacctcacactagtcgaagctccctcgtacatatccttg 8180104  T
Q  240 atagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctctagc--tactttatcatacgtcttctccaaatcaatgaa 336  Q
    ||||| | |||||   ||||| |||||  ||||||||  |  ||||||||||||||||||||  |  |||| ||||||||||||| ||||||||||||||    
T  8180103 atagccctaatattggcaatcctaacccctttcttctccagggctttccacaaaatctctctctcggtactctatcatacgtcttttccaaatcaatgaa 8180004  T
Q  337 aaccaagtgcaagtcttttttatccatccaatatcgttccatc--------agataagtagatcacgcttccatagttgacctcccaaaacataaaacca 428  Q
    ||||||||||||||||||||||||| ||| |||||| ||||||        |  |||||||||   |||| |||||| |||||||| |  ||||||||||    
T  8180003 aaccaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtcaaagtaagtagat--tgctttcatagtcgacctccc-aggcataaaacca 8179907  T
Q  429 aattggttatcagtaaatcaagtctcttttcttagtct 466  Q
    ||||||||||| |||| || |||||| |||||||||||    
T  8179906 aattggttatccgtaactcgagtctcctttcttagtct 8179869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 146 - 380
Target Start/End: Complemental strand, 2609931 - 2609695
Alignment:
Q  146 ttgacccttggtgcaatcatattgttttcggaaattgtc-ggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagc 244  Q
    |||||||||||||||||| ||||||| | ||||| | |  ||| | ||||||| | |||||||||||| | |||||||||||||||||||| ||||||||    
T  2609931 ttgacccttggtgcaatcctattgttatgggaaaatctttggtagtcccatcctgcgtcctcacactaatcgaagctctctcatacatatccttgatagc 2609832  T
Q  245 tccaatataaacaatcttaacctttttcttcttattg-ctttccacaaaatctctct-agctactttatcatacgtcttctccaaatcaatgaaaaccaa 342  Q
     | ||||||  ||||| | |||  ||||||||    | ||||||||||||||||||| ||| ||| ||||||||| ||| ||||||||||||||||| ||    
T  2609831 cctaatataggcaatccttacccctttcttctccggggctttccacaaaatctctctcagc-actctatcatacgccttttccaaatcaatgaaaactaa 2609733  T
Q  343 gtgcaagtcttttttatccatccaatatcgttccatca 380  Q
    ||||||||||||||||||| ||| |||||| |||||||    
T  2609732 gtgcaagtcttttttatccgtccgatatcgatccatca 2609695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 146 - 466
Target Start/End: Original strand, 24584485 - 24584812
Alignment:
Q  146 ttgacccttggtgcaatcatattgttttcggaaattgt-cggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagc 244  Q
    |||||||||||||||||| ||||||| | ||||| | | |||| ||||||||| | ||| ||||| |||| ||||||| |||||||||||| ||||||||    
T  24584485 ttgacccttggtgcaatcctattgttatgggaaaatcttcggtagccccatcctgcgtcttcacagtagtcgaagctccctcatacatatccttgatagc 24584584  T
Q  245 tccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaag 343  Q
    ||  |||||  ||||| |||||  ||||||||  |  | |||||||||||||||||| |  ||| ||||||||| ||||||||||||||||||||  | |    
T  24584585 tctgatataggcaatcctaacccctttcttctccagggttttccacaaaatctctctggaaactctatcatacgccttctccaaatcaatgaaaattagg 24584684  T
Q  344 tgcaagtcttttttatccatccaatatcgttccatca------ga--taagtagatcacgcttccatagttgacctcccaaaacataaaaccaaattggt 435  Q
    || ||||||||||||||| ||| |||||| |||||||      ||  |||||||||  |||||||||| | |||||||| | ||||||||||||||  ||    
T  24584685 tgtaagtcttttttatccgtccgatatcgctccatcacgcgtcgaagtaagtagat--cgcttccatactcgacctccc-agacataaaaccaaatcagt 24584781  T
Q  436 tatcagtaaatcaagtctcttttcttagtct 466  Q
    ||||  ||| || |||||| |||||||||||    
T  24584782 tatctataactcgagtctcctttcttagtct 24584812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 146 - 380
Target Start/End: Original strand, 45368504 - 45368741
Alignment:
Q  146 ttgacccttggtgcaatcatattgttttcggaaattgt-cggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagc 244  Q
    ||||||||||||||| || ||||||| | ||||| | | ||||  |||||||| |  ||||||||||||| ||||||| |||||||||||| | ||||||    
T  45368504 ttgacccttggtgcagtcctattgttatgggaaaatctacggtatccccatcctgcatcctcacactagtcgaagctccctcatacatatcctggatagc 45368603  T
Q  245 tccaatataaacaatcttaacctttttcttctt-attgctttccacaaaa-tctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaa 342  Q
    || ||||||  ||||| | |||   |||||||  |  ||||||||||||| ||||||||| |||| ||||||||| |||||| |||||||||||||| ||    
T  45368604 tctaatataggcaatcctcaccccattcttctccagggctttccacaaaaatctctctaggtactctatcatacgccttctcaaaatcaatgaaaactaa 45368703  T
Q  343 gtgcaagtcttttttatccatccaatatcgttccatca 380  Q
    ||| ||||  ||||||||| ||| |||||| |||||||    
T  45368704 gtgtaagttctttttatccgtccgatatcgctccatca 45368741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 146 - 317
Target Start/End: Complemental strand, 16292116 - 16291943
Alignment:
Q  146 ttgacccttggtgcaatcatattgttttcggaaa-ttgtcggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagc 244  Q
    |||||||||| ||||||| || |||| | ||||| || ||||| | ||||||| |||||||||||||||| |||||||||||||||||||| |||||||     
T  16292116 ttgacccttgatgcaatcctaatgttatgggaaaattttcggtagtcccatcctgtgtcctcacactagtcgaagctctctcatacatatccttgatagt 16292017  T
Q  245 tccaatataaacaatcttaacctttttcttct-tattgctttccacaaaatctctctagctactttatcatacg 317  Q
     | ||||||  ||||| |||||  ||||||||  |    |||||||||||||||||| | |||| |||||||||    
T  16292016 cctaatataggcaatcctaacccctttcttctccaggattttccacaaaatctctctcgatactctatcatacg 16291943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 95 - 146
Target Start/End: Complemental strand, 2610325 - 2610274
Alignment:
Q  95 cataaaacaccttagactcttctccatttcaaccacccagcttgaatatgat 146  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  2610325 cataaaacacctgaggctcttctccatttcaaccacccagcttgaatatgat 2610274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 146 - 276
Target Start/End: Original strand, 38453497 - 38453628
Alignment:
Q  146 ttgacccttggtgcaatcatattgttttcggaaattgt-cggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagc 244  Q
    |||||||||||||||||| ||||||| | ||||| | | ||||   ||||||| | |||||||||||||| ||| |||||||||||||||| ||||||||    
T  38453497 ttgacccttggtgcaatcctattgttatgggaaaatcttcggtaatcccatcctgcgtcctcacactagtcgaaactctctcatacatatccttgatagc 38453596  T
Q  245 tccaatataaacaatcttaacctttttcttct 276  Q
     | ||||||  ||||| |||||  ||||||||    
T  38453597 cctaatataggcaatcctaacccctttcttct 38453628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 283 - 357
Target Start/End: Original strand, 39287849 - 39287923
Alignment:
Q  283 tttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtctttttt 357  Q
    ||||||| ||||||||||||| ||||||||| | |||||||||||||||||||||||  ||||||| || |||||    
T  39287849 tttccactaaatctctctagccactttatcacatgtcttctccaaatcaatgaaaactgagtgcaaatccttttt 39287923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 284 - 360
Target Start/End: Complemental strand, 6465024 - 6464948
Alignment:
Q  284 ttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatc 360  Q
    ||||||||||||| ||||  |||||||||||| ||||| ||||||||||||||||  |||||||| | |||||||||    
T  6465024 ttccacaaaatctatctatgtactttatcatatgtcttatccaaatcaatgaaaattaagtgcaatttttttttatc 6464948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 45368112 - 45368156
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||||| |||||||||||||||||||||||||||||||||||    
T  45368112 aaaacacctgagactcttctccatttcaaccacccagcttgaata 45368156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 17581268 - 17581215
Alignment:
Q  92 tcacataaaacaccttagactcttctccatttcaaccacccagcttgaatatga 145  Q
    ||||||||||||||| |||||||||||||||| ||||| ||| |||||||||||    
T  17581268 tcacataaaacacctgagactcttctccatttgaaccatccaacttgaatatga 17581215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 452110 - 452154
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||||| || ||||||||||||||||||||||||||||||||    
T  452110 aaaacacctgaggctcttctccatttcaaccacccagcttgaata 452154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 4807386 - 4807342
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||    
T  4807386 aaaacacctgagactcttctccatttcaaccacccatcttgaata 4807342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 11992594 - 11992638
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||||| || ||||||||||||||||||||||||||||||||    
T  11992594 aaaacacctgaggctcttctccatttcaaccacccagcttgaata 11992638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 38453108 - 38453156
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaatatgat 146  Q
    ||||||| | || ||||||||||||||||||||||||||||||||||||    
T  38453108 aaaacacatgaggctcttctccatttcaaccacccagcttgaatatgat 38453156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 41197716 - 41197760
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||    
T  41197716 aaaacacctgagactcttctccatttcaaccacccaacttgaata 41197760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 202 - 265
Target Start/End: Complemental strand, 37281451 - 37281388
Alignment:
Q  202 tcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaac 265  Q
    ||||||||||||||||||||| || ||||||||| ||||||| || ||||||| ||||| ||||    
T  37281451 tcctcacactagttgaagctcccttatacatatccttgatagttctaatataatcaatcctaac 37281388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 142
Target Start/End: Complemental strand, 3865872 - 3865822
Alignment:
Q  92 tcacataaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||| |||||| || || ||||||||||||||||||||||||||||||||    
T  3865872 tcacacaaaacatctgaggctcttctccatttcaaccacccagcttgaata 3865822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 142
Target Start/End: Complemental strand, 8180561 - 8180530
Alignment:
Q  111 ctcttctccatttcaaccacccagcttgaata 142  Q
    ||||||||||||||||||||||||||||||||    
T  8180561 ctcttctccatttcaaccacccagcttgaata 8180530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 3244139 - 3244183
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||||| || ||| |||||||||| |||||||||||||||||    
T  3244139 aaaacacctgaggctcatctccatttctaccacccagcttgaata 3244183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 225 - 336
Target Start/End: Complemental strand, 13148645 - 13148533
Alignment:
Q  225 tcatacatatcattgatagctccaatataaacaatcttaacctttttcttct-tattgctttccacaaaatctctctagctactttatcatacgtcttct 323  Q
    ||||||||||||| |||| ||| ||||||| ||||  |||||  |||||| | ||  ||||| ||||||||||||||||  ||| ||||| ||  ||||     
T  13148645 tcatacatatcatggataactctaatataaccaattataacccctttcttttctagggcttttcacaaaatctctctaggcactctatcacacaccttcc 13148546  T
Q  324 ccaaatcaatgaa 336  Q
    |||||||||||||    
T  13148545 ccaaatcaatgaa 13148533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 114 - 146
Target Start/End: Original strand, 24584110 - 24584142
Alignment:
Q  114 ttctccatttcaaccacccagcttgaatatgat 146  Q
    ||||||||||| |||||||||||||||||||||    
T  24584110 ttctccatttccaccacccagcttgaatatgat 24584142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 281 - 380
Target Start/End: Complemental strand, 33251579 - 33251482
Alignment:
Q  281 gctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca 380  Q
    |||||||||||||||||| ||   ||| ||||| ||| |||||| |||||||||||||| | |||  | |||||||||| ||| | |||||| |||||||    
T  33251579 gctttccacaaaatctctttac--actatatcacacgccttctcgaaatcaatgaaaactaggtgacaatcttttttatacatacgatatcgctccatca 33251482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 2e-50; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 146 - 466
Target Start/End: Original strand, 33350685 - 33351012
Alignment:
Q  146 ttgacccttggtgcaatcatattgttttcggaaattgt-cggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagc 244  Q
    |||||||||||||||||| ||||||| | ||||| | | |||| | ||||||| | ||| |||||||||| |||||||||||||||||||| ||||||||    
T  33350685 ttgacccttggtgcaatcctattgttatgggaaaatcttcggtagtcccatcctgcgtcttcacactagtcgaagctctctcatacatatccttgatagc 33350784  T
Q  245 tccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaag 343  Q
     | ||||||  ||||| ||||| |||||||||  |  |||||||||||||||||||| | |||| ||||||||  ||| |||||||||| |||||| |||    
T  33350785 cctaatataggcaatcctaacccttttcttctccagggctttccacaaaatctctctcggtactctatcataccccttttccaaatcaaagaaaactaag 33350884  T
Q  344 tgcaagtcttttttatccatccaatatcgttccatca------ga--taagtagatcacgcttccatagttgacctcccaaaacataaaaccaaattggt 435  Q
    |||||||||||||||||| ||| |||||| |||||||      ||  |||||||||   ||||||||||| |||||||| || |||||||||||||||||    
T  33350885 tgcaagtcttttttatccgtccgatatcgctccatcacgcgttgaagtaagtagat--tgcttccatagtcgacctccc-aagcataaaaccaaattggt 33350981  T
Q  436 tatcagtaaatcaagtctcttttcttagtct 466  Q
    |||| |||| |  |||||| |||||||||||    
T  33350982 tatccgtaactagagtctcctttcttagtct 33351012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 146 - 466
Target Start/End: Complemental strand, 36651397 - 36651070
Alignment:
Q  146 ttgacccttggtgcaatcatattgttttcggaaattgt-cggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagc 244  Q
    |||||||||||||||||| ||||||| | |||||   | |||| | ||||||| | |||||||||||||| ||| ||| |||||||||||| ||||||||    
T  36651397 ttgacccttggtgcaatcctattgttatgggaaaaacttcggtagtcccatcctgcgtcctcacactagtcgaaactccctcatacatatccttgatagc 36651298  T
Q  245 tccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaag 343  Q
     | ||||||  ||||| |||||  || |||||  |  ||||||||| |||||||||| | |||| ||||||||| ||| ||||||||||||||||| |||    
T  36651297 cctaatataggcaatcctaaccccttacttctccagggctttccacgaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaag 36651198  T
Q  344 tgcaagtcttttttatccatccaatatcgttccatca------ga--taagtagatcacgcttccatagttgacctcccaaaacataaaaccaaattggt 435  Q
    |||||||||||||||||| ||| |||||| |||||||      ||  |||||||||   ||||||||| | |||||||| | ||||||||||||||||||    
T  36651197 tgcaagtcttttttatccgtccgatatcgctccatcacgcgtcgaagtaagtagat--tgcttccataatcgacctccc-agacataaaaccaaattggt 36651101  T
Q  436 tatcagtaaatcaagtctcttttcttagtct 466  Q
    |||| |||| || |||||| |||||||||||    
T  36651100 tatccgtaactcgagtctcctttcttagtct 36651070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 146 - 466
Target Start/End: Original strand, 39907258 - 39907585
Alignment:
Q  146 ttgacccttggtgcaatcatattgttttcggaaattgt-cggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagc 244  Q
    |||||||||||||||||| ||||||| | ||||| | | | || | ||||||| |  ||||||||||||| ||||||| |||||||||||| ||||||||    
T  39907258 ttgacccttggtgcaatcctattgttatgggaaaatcttccgtagtcccatcctgcatcctcacactagtcgaagctccctcatacatatccttgatagc 39907357  T
Q  245 tccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaag 343  Q
     | ||||||  ||||| |||||  ||||||||  |  |||||||||||||||||||| | |||| ||||||||| ||| ||||||||||||||||| |||    
T  39907358 cctaatataggcaatcctaacccctttcttctccagggctttccacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaag 39907457  T
Q  344 tgcaagtcttttttatccatccaatatcgttccatca------ga--taagtagatcacgcttccatagttgacctcccaaaacataaaaccaaattggt 435  Q
    |||||||||||||||||  ||| |||||| |||||||      ||  |||||||||   ||||||| ||| |||||||| |  |||||||||||||||||    
T  39907458 tgcaagtcttttttatctgtccgatatcgctccatcacgcgtcgaagtaagtagat--tgcttccacagtcgacctccc-aggcataaaaccaaattggt 39907554  T
Q  436 tatcagtaaatcaagtctcttttcttagtct 466  Q
    |||| |||| ||  ||||| |||||||||||    
T  39907555 tatccgtaactcgggtctcctttcttagtct 39907585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 146 - 380
Target Start/End: Original strand, 46356730 - 46356966
Alignment:
Q  146 ttgacccttggtgcaatcatattgttttcggaaattgtc-ggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagc 244  Q
    |||||||||||||||||| ||||||| | ||||| | |  ||| | ||||||| | |||||||||||||| ||||||| |||||||||||| ||||||||    
T  46356730 ttgacccttggtgcaatcctattgttatgggaaaatctttggtagtcccatcctgcgtcctcacactagtcgaagctccctcatacatatccttgatagc 46356829  T
Q  245 tccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaag 343  Q
     | ||||||  ||||  |||||  ||||||||  |  |||||||||||||||||||| | |||| ||||||||| ||| ||||||||||||||||| |||    
T  46356830 cctaatataggcaattctaacccctttcttctccagggctttccacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaag 46356929  T
Q  344 tgcaagtcttttttatccatccaatatcgttccatca 380  Q
    |||||||||||||||| | ||| |||||| |||||||    
T  46356930 tgcaagtcttttttattcgtccgatatcgctccatca 46356966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 146 - 466
Target Start/End: Complemental strand, 32630011 - 32629688
Alignment:
Q  146 ttgacccttggtgcaatcatattgttttcggaaattgt-cggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagc 244  Q
    ||||||||||||||| || ||||||| | ||||| | | ||||  |||||||| | ||||||||||  || ||||||| |||||||||||| | ||||||    
T  32630011 ttgacccttggtgcagtcctattgttatgggaaaatctacggtatccccatcctgcgtcctcacacaggtcgaagctccctcatacatatcctggatagc 32629912  T
Q  245 tccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaag 343  Q
    |  ||||||  ||||| | |||  ||||||||| |  |||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| |||    
T  32629911 tttaatataggcaatcctcacccctttcttcttcagggctttccacaaaatctctctaggtactctatcatacgccttctccaaatcaatgaaaactaag 32629812  T
Q  344 tgcaagtcttttttatccatccaatatcgttccatca----gataagtagatcacgcttccatagttgacctcccaaaacataaaaccaaattggttatc 439  Q
    || ||||||||||||||| ||| |||||  |||||||       ||||||||  |||||||||||| ||||| || |  |||||| ||||||||||||||    
T  32629811 tgtaagtcttttttatccgtccgatatctctccatcacgcgtcgaagtagat--cgcttccatagtcgaccttcc-aggcataaagccaaattggttatc 32629715  T
Q  440 agtaaatcaagtctcttttcttagtct 466  Q
     ||||    ||||||||||||||||||    
T  32629714 cgtaacgtgagtctcttttcttagtct 32629688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 146 - 360
Target Start/End: Original strand, 36870203 - 36870419
Alignment:
Q  146 ttgacccttggtgcaatcatattgttttcggaaattgt-cggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagc 244  Q
    |||||||||||||||||| ||||||| | ||||| | | ||||  |||||||| |  ||||||||||||||||||||| |||||||||||| |||||  |    
T  36870203 ttgacccttggtgcaatcctattgttatgggaaaatttgcggtatccccatcctgcatcctcacactagttgaagctccctcatacatatccttgatgac 36870302  T
Q  245 tccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaag 343  Q
    || ||||||  ||||| |||||  ||| || |  |  ||||||||||||||||||||||  ||| ||||||||| ||||||||||||||||||||  |||    
T  36870303 tctaatataggcaatcctaacccctttattttccagggctttccacaaaatctctctaggcactctatcatacgccttctccaaatcaatgaaaattaag 36870402  T
Q  344 tgcaagtcttttttatc 360  Q
    ||||||| |||||||||    
T  36870403 tgcaagtattttttatc 36870419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 146 - 380
Target Start/End: Complemental strand, 38606441 - 38606206
Alignment:
Q  146 ttgacccttggtgcaatcatattgttttcggaaattgt-cggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagc 244  Q
    ||||||||||||||| || ||||||| ||| ||| | | ||||   ||||||| | |||||||||||||| ||||||| |||||||||||| | ||||||    
T  38606441 ttgacccttggtgcagtcctattgttatcgaaaaatctacggtattcccatcctgcgtcctcacactagtcgaagctccctcatacatatcttggatagc 38606342  T
Q  245 tccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaag 343  Q
    || ||||||  ||||| | | |  ||||||||  |  ||||||||||||||||||| || ||||  |||||||| |||||| |||||||||||||| |||    
T  38606341 tctaatataggcaatcctcatccctttcttctccagggctttccacaaaatctctccaggtactc-atcatacgccttctcaaaatcaatgaaaactaag 38606243  T
Q  344 tgcaagtcttttttatccatccaatatcgttccatca 380  Q
    || ||||||||||||||| ||| |||||| |||||||    
T  38606242 tgtaagtcttttttatccgtccgatatcgctccatca 38606206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 281 - 466
Target Start/End: Complemental strand, 22346778 - 22346588
Alignment:
Q  281 gctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca 380  Q
    |||||||||||||||||||| | |||| ||||||||| ||| ||||||||||||||||| ||||||||||||||||||||| | | |||||| |||||||    
T  22346778 gctttccacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgttcgatatcgctccatca 22346679  T
Q  381 ------ga--taagtagatcacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 466  Q
          ||  |||||||||   ||||||||||| |||||||| |  ||||||||||||||||||||| | || || |||||| |||||||||||    
T  22346678 cgtgtcgaagtaagtagat--tgcttccatagtcgacctccc-aggcataaaaccaaattggttatccgaaactcgagtctcctttcttagtct 22346588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 146 - 346
Target Start/End: Complemental strand, 11593356 - 11593154
Alignment:
Q  146 ttgacccttggtgcaatcatattgttttcggaaattgt-cggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagc 244  Q
    |||||||||||||||||| ||||||| | ||||| | | |||| | | ||||| | |||||||||||||| ||||||| |||||||||||| ||||||||    
T  11593356 ttgacccttggtgcaatcctattgttatgggaaaatcttcggtagtctcatcctgcgtcctcacactagtcgaagctccctcatacatatccttgatagc 11593257  T
Q  245 tccaatataaacaatcttaacctttttcttct-tattgctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaag 343  Q
     | ||||||  ||||| |||||  ||||||||  |  ||||  |||||||||||||| | |||| ||||||||| ||| ||||||||||||||||| |||    
T  11593256 cctaatataggcaatcctaacccctttcttctccagggcttgtcacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaag 11593157  T
Q  344 tgc 346  Q
    |||    
T  11593156 tgc 11593154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 281 - 466
Target Start/End: Complemental strand, 38896883 - 38896693
Alignment:
Q  281 gctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccat-- 378  Q
    |||||||||||||||||||| | |||| ||||||||  ||| ||||||| ||||||||| ||||||||||||||||||||| ||| |||||| |||||      
T  38896883 gctttccacaaaatctctctcggtactctatcatacaccttttccaaattaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccattg 38896784  T
Q  379 ------cagataagtagatcacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 466  Q
           |  |||||||||   |||||||||||||||||||| |  ||||||||| ||||||||||| |||| || |||||| |||||||||||    
T  38896783 tgcgtcgaagtaagtagat--tgcttccatagttgacctccc-aggcataaaaccgaattggttatccgtaactcgagtctcctttcttagtct 38896693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 190 - 380
Target Start/End: Original strand, 24178119 - 24178310
Alignment:
Q  190 ccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttcca 288  Q
    |||||||| | |||||||| ||||| ||||||| |||||||| ||| |||||||||  ||| ||  ||||| |||||  ||||||||  |  ||||||||    
T  24178119 ccccatccggcgtcctcaccctagtcgaagctccctcatacacatccttgatagctttaatttaggcaatcctaacccctttcttctccagggctttcca 24178218  T
Q  289 caaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca 380  Q
    |||||||||||||| |||| | ||||||  | ||||||||||||||||||| || || ||  ||||| ||||| |||  ||||| |||||||    
T  24178219 caaaatctctctaggtactctgtcatacaccgtctccaaatcaatgaaaactaattgtaacccttttgtatccgtccggtatcgctccatca 24178310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 281 - 364
Target Start/End: Original strand, 33738342 - 33738425
Alignment:
Q  281 gctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatc 364  Q
    |||||||||||||||| |||||| |||||||| || |  || ||||||||||||||||  ||||||||||||||||||||||||    
T  33738342 gctttccacaaaatctttctagccactttatcgtatgcattttccaaatcaatgaaaattaagtgcaagtcttttttatccatc 33738425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 283 - 364
Target Start/End: Complemental strand, 32483737 - 32483656
Alignment:
Q  283 tttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatc 364  Q
    |||||||||||||||||| | |  |||||| || ||||||| ||||||||||||||  ||||||||||||||||||||||||    
T  32483737 tttccacaaaatctctcttggtgatttatcgtatgtcttctacaaatcaatgaaaattaagtgcaagtcttttttatccatc 32483656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 146 - 266
Target Start/End: Complemental strand, 49028684 - 49028563
Alignment:
Q  146 ttgacccttggtgcaatcatattgttttcggaaattgt-cggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagc 244  Q
    |||||||||||||||||| ||||||| | ||||| | | |||| | |||||||   |||||||||||||| ||||||| |||||||||||| ||||||||    
T  49028684 ttgacccttggtgcaatcctattgttatgggaaaatcttcggtagtcccatcctacgtcctcacactagtcgaagctccctcatacatatccttgatagc 49028585  T
Q  245 tccaatataaacaatcttaacc 266  Q
     | ||||||  ||||| |||||    
T  49028584 cctaatataggcaatcctaacc 49028563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 192 - 362
Target Start/End: Original strand, 48055743 - 48055913
Alignment:
Q  192 ccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttct-tattgctttccaca 290  Q
    |||||| |||||||||||||||||||  ||| || ||| ||||| || ||||||| ||||||  || || |||||  |||||||| ||  | ||||||      
T  48055743 ccatcctgtgtcctcacactagttgagactcccttatagatatccttcatagctcgaatataggca-tcctaacccctttcttctctagggatttccatg 48055841  T
Q  291 aaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatcca 362  Q
    |||||||| |||  ||| ||||| ||| ||||||| ||||||||||||| ||||||||||| |||| |||||    
T  48055842 aaatctctttaggcactctatcacacgccttctccgaatcaatgaaaactaagtgcaagtcgttttaatcca 48055913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 11593754 - 11593710
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||||| || ||||||||||||||||||||||||||||||||    
T  11593754 aaaacacctgaggctcttctccatttcaaccacccagcttgaata 11593710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 287 - 370
Target Start/End: Original strand, 17101504 - 17101588
Alignment:
Q  287 cacaaaatctctctagcta-ctttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatat 370  Q
    |||||||| |||||||| | || ||||| ||||  |||||||||| |||||||| |||| |||||||||||||||||||| ||||    
T  17101504 cacaaaatttctctagccatctctatcacacgtaatctccaaatcgatgaaaactaagtacaagtcttttttatccatccgatat 17101588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 36651788 - 36651744
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||||| || ||||||||||||||||||||||||||||||||    
T  36651788 aaaacacctgaggctcttctccatttcaaccacccagcttgaata 36651744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 38606799 - 38606755
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||||| || ||||||||||||||||||||||||||||||||    
T  38606799 aaaacacctaaggctcttctccatttcaaccacccagcttgaata 38606755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 395 - 466
Target Start/End: Complemental strand, 11592835 - 11592765
Alignment:
Q  395 gcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 466  Q
    ||||||||||| ||||||| ||  ||||||||||||||||||||| |||| || |||||| |||||||||||    
T  11592835 gcttccatagtcgacctcc-aagccataaaaccaaattggttatccgtaactcgagtctcctttcttagtct 11592765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 31005017 - 31004973
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||||| || ||||||||||||||||||||||| ||||||||    
T  31005017 aaaacacctgaggctcttctccatttcaaccacccaacttgaata 31004973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 33350294 - 33350338
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||| | || ||||||||||||||||||||||||||||||||    
T  33350294 aaaacacttgaggctcttctccatttcaaccacccagcttgaata 33350338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 34869214 - 34869166
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaatatgat 146  Q
    ||||| ||| || |||||||||| |||||||||||||||||||||||||    
T  34869214 aaaacgcctgaggctcttctccaattcaaccacccagcttgaatatgat 34869166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 36869777 - 36869821
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||| ||| || ||||||||||||||||||||||||||||||||    
T  36869777 aaaacccctgaggctcttctccatttcaaccacccagcttgaata 36869821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 37616710 - 37616666
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||| | || ||||||||||||||||||||||||||||||||    
T  37616710 aaaacacttgaggctcttctccatttcaaccacccagcttgaata 37616666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 43281470 - 43281426
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||| ||| || ||||||||||||||||||||||||||||||||    
T  43281470 aaaacgcctgaggctcttctccatttcaaccacccagcttgaata 43281426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 46356339 - 46356383
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||||| || ||||||||||||||||||||||| ||||||||    
T  46356339 aaaacacctgaggctcttctccatttcaaccacccaacttgaata 46356383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 48919182 - 48919138
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||||| || ||||||||||||||||| ||||||||||||||    
T  48919182 aaaacacctgaggctcttctccatttcaactacccagcttgaata 48919138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 92 - 146
Target Start/End: Original strand, 418891 - 418945
Alignment:
Q  92 tcacataaaacaccttagactcttctccatttcaaccacccagcttgaatatgat 146  Q
    ||||||||||| |  ||| ||||||||||||||| ||||||||||||||| ||||    
T  418891 tcacataaaaccctctaggctcttctccatttcacccacccagcttgaatctgat 418945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 142
Target Start/End: Original strand, 35906703 - 35906733
Alignment:
Q  112 tcttctccatttcaaccacccagcttgaata 142  Q
    |||||||||||||||||||||||||||||||    
T  35906703 tcttctccatttcaaccacccagcttgaata 35906733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 333
Target Start/End: Original strand, 21520321 - 21520402
Alignment:
Q  253 aaacaatcttaacctttttcttct-tattgctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaat 333  Q
    |||||||| |||| |||||||||| ||  ||||||||| | |||||||||   | |||||||||| ||||||||||||||||    
T  21520321 aaacaatcataacatttttcttctctagggctttccacgatatctctctaaacattttatcatacatcttctccaaatcaat 21520402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 21517809 - 21517861
Alignment:
Q  94 acataaaacaccttagactcttctccatttcaaccacccagcttgaatatgat 146  Q
    |||| ||||| || || |||||||| |||||||||||||| ||||||||||||    
T  21517809 acattaaacatctaaggctcttctcgatttcaaccacccaacttgaatatgat 21517861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 146 - 466
Target Start/End: Original strand, 23907181 - 23907508
Alignment:
Q  146 ttgacccttggtgcaatcatattgttttcggaaattgt-cggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagc 244  Q
    |||||||||||||||||| ||||||| | ||||| | | |||| | | ||||| | |||||||||||||| ||||||| |||||||||||| ||||||||    
T  23907181 ttgacccttggtgcaatcctattgttatgggaaaatcttcggtagtctcatcctgcgtcctcacactagtcgaagctccctcatacatatccttgatagc 23907280  T
Q  245 tccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaag 343  Q
    || |||||| |||||| |||||  ||||||||  |  |||||||||||||||||||| | |||| ||||||||| ||| ||||||||||||||||| |||    
T  23907281 tctaatatagacaatcctaacccctttcttctccagggctttccacaaaatctctcttggtactctatcatacgccttttccaaatcaatgaaaactaag 23907380  T
Q  344 tgcaagtcttttttatccatccaatatcgttccatca------ga--taagtagatcacgcttccatagttgacctcccaaaacataaaaccaaattggt 435  Q
    |||||||||||||||||| | | |||||| |||||||      ||  |||||||||   ||||||||||| |||||||| |  ||||||||||||||| |    
T  23907381 tgcaagtcttttttatccgttcgatatcgctccatcacgcgtcgaagtaagtagat--tgcttccatagtcgacctccc-aggcataaaaccaaattgat 23907477  T
Q  436 tatcagtaaatcaagtctcttttcttagtct 466  Q
    |||| |||| || |||||| |||||||||||    
T  23907478 tatccgtaactcgagtctcctttcttagtct 23907508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 146 - 466
Target Start/End: Complemental strand, 435635 - 435308
Alignment:
Q  146 ttgacccttggtgcaatcatattgttttcggaaattgt-cggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagc 244  Q
    ||||||||||||||| || ||||||| | ||||| | | |||| | ||||||  | |||||||||||||| ||||||| |||||||||||| ||||||||    
T  435635 ttgacccttggtgcactcctattgttatgggaaaatcttcggtagtcccatcttgcgtcctcacactagtcgaagctccctcatacatatccttgatagc 435536  T
Q  245 tccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaag 343  Q
     | ||||||  ||||| |||||  ||||||||  |  |||||||||||||||||||| | |||| ||||||||||||| ||||||||||||||||| |||    
T  435535 cctaatataggcaatcctaacccctttcttctccagggctttccacaaaatctctctcggtactctatcatacgtcttttccaaatcaatgaaaactaag 435436  T
Q  344 tgcaagtcttttttatccatccaatatcgttccatca------ga--taagtagatcacgcttccatagttgacctcccaaaacataaaaccaaattggt 435  Q
    |||||||||||||||||| ||| |||||| || ||||      ||  |||||||||   |||||||||||  ||||||| |  |||||||||||||||||    
T  435435 tgcaagtcttttttatccgtccgatatcgctctatcacgcgtcgaagtaagtagat--tgcttccatagtcaacctccc-aggcataaaaccaaattggt 435339  T
Q  436 tatcagtaaatcaagtctcttttcttagtct 466  Q
    |||| |||| || || ||| |||||||||||    
T  435338 tatccgtaactcgagcctcctttcttagtct 435308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 202 - 466
Target Start/End: Original strand, 48623463 - 48623733
Alignment:
Q  202 tcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctct 300  Q
    ||||||||||||| ||||||| ||| |||||||| |||||||| | ||||||  ||||| |||||  ||||||||  |  ||||||||||||||||||||    
T  48623463 tcctcacactagtcgaagctccctcgtacatatctttgatagccctaatataggcaatcctaacccctttcttctccagggctttccacaaaatctctct 48623562  T
Q  301 agctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca------ga--taagtagatc 392  Q
     | |||| ||||||||  ||| ||||||||||||||||| ||||||||||||||||||||| ||| |||||| |||||||      ||  |||||||||     
T  48623563 cggtactctatcatacaccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtcctatatcgctccatcacgcgtcgaactaagtagat- 48623661  T
Q  393 acgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 466  Q
      ||||||||||| |||||||| |  ||||||||||||||||||||| |||| || |||||  |||||||||||    
T  48623662 -tgcttccatagtcgacctccc-aggcataaaaccaaattggttatctgtaactcgagtcttctttcttagtct 48623733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 149 - 369
Target Start/End: Original strand, 55769265 - 55769486
Alignment:
Q  149 acccttggtgcaatcatattgttttcggaaa-ttgtcggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagctcc 247  Q
    ||||||||||||||| ||||||| | ||||| ||||| ||||| |||||  | ||||||| |||||| ||||||| || ||||||||||||||||||||     
T  55769265 acccttggtgcaatcctattgttatgggaaaattgtctgtggctccatcttgcgtcctcaaactagtcgaagctccct-atacatatcattgatagctct 55769363  T
Q  248 aatataaacaatcttaacctttttcttct-tattgctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgc 346  Q
    ||||||| ||||| ||| |  |||||||| ||  |||||||||||||||| |||||  ||| || |||||| ||| || |||||||||| || ||| |||    
T  55769364 aatataagcaatcctaatccctttcttctctagagctttccacaaaatctgtctaggcactctaccatacgccttatcaaaatcaatgataatcaactgc 55769463  T
Q  347 aagtcttttttatccatccaata 369  Q
    |||||||||||||||||||||||    
T  55769464 aagtcttttttatccatccaata 55769486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 149 - 369
Target Start/End: Original strand, 55833521 - 55833742
Alignment:
Q  149 acccttggtgcaatcatattgttttcggaaa-ttgtcggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagctcc 247  Q
    ||||||||||||||| ||||||| | ||||| ||||| ||||| |||||  | ||||||| |||||| ||||||| || ||||||||||||||||||||     
T  55833521 acccttggtgcaatcctattgttatgggaaaattgtctgtggctccatcttgcgtcctcaaactagtcgaagctccct-atacatatcattgatagctct 55833619  T
Q  248 aatataaacaatcttaacctttttcttct-tattgctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgc 346  Q
    ||||||| ||||| ||| |  |||||||| ||  |||||||||||||||| |||||  ||| || |||||| ||| || |||||||||| || ||| |||    
T  55833620 aatataagcaatcctaatccctttcttctctagagctttccacaaaatctgtctaggcactctaccatacgccttatcaaaatcaatgataatcaactgc 55833719  T
Q  347 aagtcttttttatccatccaata 369  Q
    |||||||||||||||||||||||    
T  55833720 aagtcttttttatccatccaata 55833742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 146 - 357
Target Start/End: Complemental strand, 53704013 - 53703800
Alignment:
Q  146 ttgacccttggtgcaatcatattgttttcggaaattgt-cggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagc 244  Q
    |||||||||||||||||| |||||||   ||||| | | |||| | ||||||| |||||||||||||||| ||||||| |||||||||||| ||||||||    
T  53704013 ttgacccttggtgcaatcctattgttacgggaaaatcttcggtagtcccatcctgtgtcctcacactagtcgaagctccctcatacatatccttgatagc 53703914  T
Q  245 tccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaag 343  Q
     | ||||||  ||||| |||||  ||||||||| |  |||||||||||||||||||| | ||||  |||||||| ||| ||||||||| ||||||| |||    
T  53703913 cctaatataggcaatcctaacccctttcttcttcagggctttccacaaaatctctctcggtactcaatcatacgccttttccaaatcagtgaaaactaag 53703814  T
Q  344 tgcaagtctttttt 357  Q
    |||||||| |||||    
T  53703813 tgcaagtccttttt 53703800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 146 - 466
Target Start/End: Original strand, 1777894 - 1778223
Alignment:
Q  146 ttgacccttggtgcaatcatattgttttcggaaattgt-cggtggccccatcccgtgtcctcacactagttgaa-gctctctcatacatatcattgatag 243  Q
    |||||||||||||||||| ||||||| | ||||| | | |||| | |||||||   |||||||||||||||||| |||| ||||||||||||||||||||    
T  1777894 ttgacccttggtgcaatcctattgttatgggaaaatcttcggtagtcccatcctacgtcctcacactagttgaaagctccctcatacatatcattgatag 1777993  T
Q  244 ctccaatataaacaatcttaacctttttcttct-tattgctttccacaaaatctctctagctactttatcatacgtc-ttctccaaatcaatgaaaacca 341  Q
    | | ||||||  ||||  |||||  ||||||||  |  |||||||||||||||||||| | |||| ||||||||  | || ||||||||||||||||| |    
T  1777994 ccctaatataggcaattctaacccctttcttctcaagggctttccacaaaatctctcttgatactctatcatacacctttttccaaatcaatgaaaacta 1778093  T
Q  342 agtgcaagtcttttttatccatccaatatcgttccatcaga--------taagtagatcacgcttccatagttgacctcccaaaacataaaaccaaattg 433  Q
    ||||||||| |||||||||| ||| |||||| ||||||| |        |||||||||   |||||||||||  ||||||| |  ||||||| |||||||    
T  1778094 agtgcaagttttttttatccgtccgatatcgctccatcacacgtcgaagtaagtagat--tgcttccatagtcaacctccc-aggcataaaatcaaattg 1778190  T
Q  434 gttatcagtaaatcaagtctcttttcttagtct 466  Q
    |||||| |||| || |||||| |||||||||||    
T  1778191 gttatccgtaactcgagtctcctttcttagtct 1778223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 201 - 361
Target Start/End: Complemental strand, 39707810 - 39707650
Alignment:
Q  201 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttcttattgctttccacaaaatctctct 300  Q
    |||||||| |||||  || ||| ||||||||| || |||||||||| ||||||  |||||  ||||  ||||||||    |  || ||||||| ||||||    
T  39707810 gtcctcacgctagtcaaaactccctcatacatttccttgatagctctaatataggcaatccaaacccctttcttctccaggactttcacaaaacctctct 39707711  T
Q  301 agctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatcc 361  Q
    ||  ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  39707710 aggcactctatcatacgtcttctccaaatcaatgaaaactaagtgcaagtcttttttatcc 39707650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 205 - 380
Target Start/End: Original strand, 27451112 - 27451288
Alignment:
Q  205 tcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctctagc 303  Q
    |||||||||| ||||||| ||||||||||||   |||||||| ||||||  ||||| | | |  ||||||||  |  | |||||||||||||||||||      
T  27451112 tcacactagtggaagctccctcatacatatcccagatagctctaatataggcaatcctcatccctttcttctccagggttttccacaaaatctctctaag 27451211  T
Q  304 tactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca 380  Q
    |||| |||| |||| ||||||||||| | ||||||| || |||||||||||||||||| ||| |||||| |||||||    
T  27451212 tactctatcctacgccttctccaaataagtgaaaactaattgcaagtcttttttatccgtccgatatcgctccatca 27451288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 33227003 - 33226955
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaatatgat 146  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  33227003 aaaacacctgagactcttctccatttcaaccacccagcttgaatatgat 33226955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 297 - 362
Target Start/End: Complemental strand, 33369092 - 33369027
Alignment:
Q  297 ctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatcca 362  Q
    ||||||| ||| |||||| | |||| ||||||||||||||||| ||||||||||||||||||||||    
T  33369092 ctctagcaactctatcatgcatcttttccaaatcaatgaaaactaagtgcaagtcttttttatcca 33369027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 222 - 340
Target Start/End: Complemental strand, 44860435 - 44860318
Alignment:
Q  222 ctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttct-tattgctttccacaaaatctctctagctactttatcatacgtct 320  Q
    |||||||||||||| | |||||||| |||||| ||| || |||||  |||||||| ||  |||||||||||||||| |||||  |||  |||||||| ||    
T  44860435 ctctcatacatatcctagatagctcgaatatagacattcctaacccctttcttctctaaggctttccacaaaatctgtctaggcact--atcatacgcct 44860338  T
Q  321 tctccaaatcaatgaaaacc 340  Q
     |||||||||||||||||||    
T  44860337 cctccaaatcaatgaaaacc 44860318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 1777503 - 1777547
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||||| || ||||||||||||||||||||||||||||||||    
T  1777503 aaaacacctgaggctcttctccatttcaaccacccagcttgaata 1777547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 380
Target Start/End: Complemental strand, 16002274 - 16002175
Alignment:
Q  280 tgctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatc 379  Q
    |||||||||||||||||||||||  ||||| ||||| | ||| || |||||||||||||| ||||| || | |||||||||| | |||||| ||| ||||    
T  16002274 tgctttccacaaaatctctctaggaactttttcatatgccttttc-aaatcaatgaaaactaagtgaaatttttttttatccgtgcaatattgttacatc 16002176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 23906789 - 23906833
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||||| || ||||||||||||||||||||||||||||||||    
T  23906789 aaaacacctgaggctcttctccatttcaaccacccagcttgaata 23906833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 371
Target Start/End: Complemental strand, 41598214 - 41598166
Alignment:
Q  323 tccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatc 371  Q
    ||||||||| ||||||| |||||||||||| ||||||||||||||||||    
T  41598214 tccaaatcattgaaaactaagtgcaagtctcttttatccatccaatatc 41598166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 46583312 - 46583360
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaatatgat 146  Q
    |||| |||| || ||||||||||||||||||||||||||||||||||||    
T  46583312 aaaatacctgaggctcttctccatttcaaccacccagcttgaatatgat 46583360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 111 - 146
Target Start/End: Original strand, 31960315 - 31960350
Alignment:
Q  111 ctcttctccatttcaaccacccagcttgaatatgat 146  Q
    ||||||||||||||||||||||||||||||||||||    
T  31960315 ctcttctccatttcaaccacccagcttgaatatgat 31960350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 357
Target Start/End: Complemental strand, 2296402 - 2296364
Alignment:
Q  319 cttctccaaatcaatgaaaaccaagtgcaagtctttttt 357  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  2296402 cttctccaaatcaatgaaaactaagtgcaagtctttttt 2296364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 351
Target Start/End: Complemental strand, 41427188 - 41427046
Alignment:
Q  211 tagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaa-cctttttcttct-tattgctttccacaaaatctctctagctactt 308  Q
    |||||||| ||| |||||||||||| |||||||||| ||||||| ||||  ||| ||  |||| ||| ||  |||||||||| |||||| ||||  |||     
T  41427188 tagttgaatctccctcatacatatctttgatagctcaaatataagcaattgtaaccccctttcatctctagagctttccacagaatctccctagtcactc 41427089  T
Q  309 tatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtc 351  Q
    ||||| ||| |||||| ||| ||| ||| ||||||||||||||    
T  41427088 tatcacacgccttctcgaaaccaaggaataccaagtgcaagtc 41427046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 41005662 - 41005617
Alignment:
Q  226 catacatatcattgatagctccaatataaacaatcttaaccttttt 271  Q
    ||||||||||||||||| ||| ||||||| ||||||||||||||||    
T  41005662 catacatatcattgataactcaaatataagcaatcttaaccttttt 41005617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 436023 - 435979
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||||| || |||||||||||||||||||| |||||||||||    
T  436023 aaaacacctgaggctcttctccatttcaaccactcagcttgaata 435979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 27450661 - 27450705
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||| | || ||||||||||||||||||||||||||||||||    
T  27450661 aaaacacttgaggctcttctccatttcaaccacccagcttgaata 27450705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 43433712 - 43433668
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||||| || |||||||||||||||| |||||||||||||||    
T  43433712 aaaacacctgaggctcttctccatttcaatcacccagcttgaata 43433668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 48174581 - 48174625
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||||| || ||||||||||||||||||||| ||||||||||    
T  48174581 aaaacacctgaggctcttctccatttcaaccacctagcttgaata 48174625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 48623015 - 48623059
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||||| || || |||||||||||||||||||||||||||||    
T  48623015 aaaacacctgaggcttttctccatttcaaccacccagcttgaata 48623059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 53707588 - 53707544
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    |||||| || || ||||||||||||||||||||||||||||||||    
T  53707588 aaaacatctgagtctcttctccatttcaaccacccagcttgaata 53707544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 56375084 - 56375040
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||||| || |||||||| |||||||||||||||||||||||    
T  56375084 aaaacacctgaggctcttctcaatttcaaccacccagcttgaata 56375040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 142
Target Start/End: Complemental strand, 50286754 - 50286721
Alignment:
Q  109 gactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||||| ||||||||||||||||||||||||    
T  50286754 gactcttcttcatttcaaccacccagcttgaata 50286721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 35690087 - 35690055
Alignment:
Q  110 actcttctccatttcaaccacccagcttgaata 142  Q
    |||||||||||||||||||||||| ||||||||    
T  35690087 actcttctccatttcaaccacccaacttgaata 35690055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 287 - 339
Target Start/End: Complemental strand, 42037167 - 42037115
Alignment:
Q  287 cacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaac 339  Q
    |||||||||||| | |  ||| ||||||| |||||||||||||||||||||||    
T  42037167 cacaaaatctctatggacactatatcatatgtcttctccaaatcaatgaaaac 42037115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 2e-50; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 146 - 466
Target Start/End: Original strand, 43241260 - 43241587
Alignment:
Q  146 ttgacccttggtgcaatcatattgttttcggaaattgt-cggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagc 244  Q
    |||||||||||||||||| ||||||| | ||||| | | |||| | ||||||  | |||||||||||||| ||||||| |||||||||||| ||||||||    
T  43241260 ttgacccttggtgcaatcctattgttatgggaaaatcttcggtagtcccatcgtgcgtcctcacactagtcgaagctccctcatacatatccttgatagc 43241359  T
Q  245 tccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaag 343  Q
     | ||||||  ||||| |||||  ||||||||  |  |||||||||||||||||||| | |||| ||||||||||||| ||||||||||||||||| |||    
T  43241360 cctaatataggcaatcctaacccctttcttctccagagctttccacaaaatctctctcggtactctatcatacgtcttttccaaatcaatgaaaactaag 43241459  T
Q  344 tgcaagtcttttttatccatccaatatcgttccatca------ga--taagtagatcacgcttccatagttgacctcccaaaacataaaaccaaattggt 435  Q
    |||||||||||||||||| ||| |||||| |||||||      ||  |||||||||   ||||||||||| |||||||| |  |||||||||||||||||    
T  43241460 tgcaagtcttttttatccgtccgatatcgctccatcacgcgtcgaagtaagtagat--tgcttccatagtcgacctccc-aggcataaaaccaaattggt 43241556  T
Q  436 tatcagtaaatcaagtctcttttcttagtct 466  Q
    |||| |||| |  |||||| |||||||||||    
T  43241557 tatccgtaacttgagtctcctttcttagtct 43241587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 191 - 380
Target Start/End: Complemental strand, 8671278 - 8671085
Alignment:
Q  191 cccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatctt---aacctttttcttctt-attgctttc 286  Q
    ||||||| | |||||||||||||| ||||||| |||||||||||| |||||||| | |||||| |||||  |   ||||  ||||||||  | |||||||    
T  8671278 cccatcctgcgtcctcacactagtcgaagctccctcatacatatccttgatagccctaatatagacaattattctaacccctttcttctccagtgctttc 8671179  T
Q  287 cacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca 380  Q
    |||||||||||||| | |||| ||||||||| ||| ||||||||||||||||| ||||||||||||||||||||| ||| |||||| |||||||    
T  8671178 cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatca 8671085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 146 - 466
Target Start/End: Original strand, 51441643 - 51441970
Alignment:
Q  146 ttgacccttggtgcaatcatattgttttcggaaattgt-cggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagc 244  Q
    |||||||||||||||||| ||||||| | ||||| | | |||| | ||||||  | |||||||||||| | ||||||| |||||||||||| ||||||||    
T  51441643 ttgacccttggtgcaatcctattgttatgggaaaatcttcggtagtcccatcttgcgtcctcacactaatcgaagctccctcatacatatccttgatagc 51441742  T
Q  245 tccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaag 343  Q
     | ||||||  ||||  |||||  ||||||||  |  |||||||||||||||||||  | |||| |||||||||  || ||||||||||||||||| |||    
T  51441743 cctaatataggcaattctaacccatttcttctccagggctttccacaaaatctctcacgatactctatcatacgctttttccaaatcaatgaaaactaag 51441842  T
Q  344 tgcaagtcttttttatccatccaatatcgttccatca------ga--taagtagatcacgcttccatagttgacctcccaaaacataaaaccaaattggt 435  Q
    |||||||||||||||||| ||  |||||  |||||||      ||  |||||||||   ||||||||||| |||||||| |  |||||||||||||||||    
T  51441843 tgcaagtcttttttatccgtctgatatcactccatcacgcgtcgatgtaagtagat--tgcttccatagtcgacctccc-aggcataaaaccaaattggt 51441939  T
Q  436 tatcagtaaatcaagtctcttttcttagtct 466  Q
    |||| |||| || |||||| |||||||||||    
T  51441940 tatccgtaactcgagtctcctttcttagtct 51441970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 147 - 466
Target Start/End: Original strand, 49348274 - 49348608
Alignment:
Q  147 tgacccttggtgcaatcatattgttttcggaaattgt-cggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagct 245  Q
    ||||||||||||||||| ||||||| | ||||| | | |||| | ||||||  | |||||||||||||| ||||||| |||||||||||| ||||||||     
T  49348274 tgacccttggtgcaatcctattgttatgggaaaatcttcggtagtcccatcatgcgtcctcacactagtcgaagctccctcatacatatccttgatagcc 49348373  T
Q  246 ccaatataaacaatcttaacctttttcttct-tattgctttccacaaaatctctctagctactttatcat--------acgtcttctccaaatcaatgaa 336  Q
    | ||||||  ||||| ||||| |||||||||  |  |||||||||||||||||||| | |||| ||||||        ||| ||| ||||||||||||||    
T  49348374 ctaatataggcaatcctaacccttttcttctccagggctttccacaaaatctctctcggtactctatcatactatcacacgccttttccaaatcaatgaa 49348473  T
Q  337 aaccaagtgcaagtcttttttatccatccaatatcgttccatca------ga--taagtagatcacgcttccatagttgacctcccaaaacataaaacca 428  Q
    ||| ||||||||||||||||||||| ||| |||||| |||||||      ||  |||||||||   ||||||||||| |||||||| |  ||||||||||    
T  49348474 aactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtcgaagtaagtagat--tgcttccatagtcgacctccc-aggcataaaacca 49348570  T
Q  429 aattggttatcagtaaatcaagtctcttttcttagtct 466  Q
    |||||||||||  ||| || |||||  |||||||||||    
T  49348571 aattggttatccataactcgagtcttctttcttagtct 49348608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 183 - 464
Target Start/End: Original strand, 29173446 - 29173733
Alignment:
Q  183 tcggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttct-tattg 281  Q
    ||||| ||||||||  | |||||||||||||| ||| ||  | ||| ||||||||||||||||| ||||||  ||||| |||||  | |||||| ||       
T  29173446 tcggtagccccatcatgcgtcctcacactagtcgaaacttccccatgcatatcattgatagctctaatataggcaatcctaacccctctcttctctaggc 29173545  T
Q  282 ctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatcag 381  Q
    |||||||||||| |||||| |  ||| ||||||||| ||||||||||||||| ||||| ||||||||||||||||||||| ||  |||||| |||||||     
T  29173546 ctttccacaaaacctctctcggcactctatcatacgccttctccaaatcaataaaaactaagtgcaagtcttttttatccgtctgatatcgctccatcac 29173645  T
Q  382 a--------taagtagatcacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagt 464  Q
    |        |||||| ||   ||||||||||| ||||||| |   |||||||||||||| |||||| |||| || ||||||||||||||||    
T  29173646 acgtcgaagtaagtaaatt--gcttccatagtcgacctcctagg-cataaaaccaaattagttatccgtaactcgagtctcttttcttagt 29173733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 202 - 360
Target Start/End: Original strand, 32405400 - 32405558
Alignment:
Q  202 tcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttct-tattgctttccacaaaatctctct 300  Q
    |||||| ||||||  |||||| | | ||| |||| || ||||||| ||||||| ||||  |||||  |||||||| ||| ||||||||||||||||||||    
T  32405400 tcctcaaactagtcaaagctcccgcgtacgtatcctttatagctctaatataagcaattctaacccctttcttctctatggctttccacaaaatctctct 32405499  T
Q  301 agctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatc 360  Q
    ||  ||| ||||||||| ||| ||||||||||||||||| |||||||  |||||||||||    
T  32405500 agacactctatcatacg-cttttccaaatcaatgaaaactaagtgcacatcttttttatc 32405558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 201 - 359
Target Start/End: Original strand, 34828020 - 34828179
Alignment:
Q  201 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttct-tattgctttccacaaaatctctc 299  Q
    |||||||||||||| || || | |||||||||||| | ||||| || ||||||| ||||| |||||| |||||||| ||   |||||||||||||||||     
T  34828020 gtcctcacactagtggaggccccctcatacatatcttggatagatcgaatataagcaatcctaacctctttcttctctaggactttccacaaaatctctt 34828119  T
Q  300 tagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttat 359  Q
    |||  ||| ||||||||   |||| ||||||||||||||| |||||| |||| |||||||    
T  34828120 tagacactatatcatacacattcttcaaatcaatgaaaactaagtgcgagtcatttttat 34828179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 201 - 380
Target Start/End: Complemental strand, 45833907 - 45833727
Alignment:
Q  201 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaac--ctttttcttcttattgctttccacaaaatctct 298  Q
    ||||||||| |||| ||||||| |||||| ||||| |||||| ||| | ||||||||||| ||||  ||||||  |||||  |||||||||||||| |||    
T  45833907 gtcctcacattagtcgaagctccctcatatatatctttgataactctagtataaacaatcctaacatcttttttctcttag-gctttccacaaaatatct 45833809  T
Q  299 ctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca 380  Q
    ||||  ||| |||| |||| ||||| ||||||||||||||| |  | ||| ||||||||||   |||||||||  |||||||    
T  45833808 ctagacactctatcgtacgccttcttcaaatcaatgaaaactatatacaaatcttttttatttgtccaatatcactccatca 45833727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 146 - 380
Target Start/End: Original strand, 35829272 - 35829506
Alignment:
Q  146 ttgacccttggtgcaatcatattgttttcggaaatt-gtcggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagc 244  Q
    |||| ||||||||||||| ||||||| | ||||| | ||||| | |||||||  |||| ||||||||||||||||  | ||||| |||||  ||||||||    
T  35829272 ttgatccttggtgcaatcctattgttatgggaaaatcgtcggcgaccccatcttgtgtactcacactagttgaagtcccctcatgcatatatttgatagc 35829371  T
Q  245 tccaatataaacaatcttaacctttttcttct-tattgctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaag 343  Q
    || || |||| ||||| ||||   |||||| | ||  |||||||| |||| ||||||||  ||  ||| ||| | ||||||||||||||||||||| |||    
T  35829372 tcgaacataagcaatcataactcatttcttttctagggctttccaaaaaacctctctaggcac--tattataagccttctccaaatcaatgaaaactaag 35829469  T
Q  344 tgcaagtcttttttatccatccaatatcgttccatca 380  Q
    || |  ||||||||||   |||||||| |||||||||    
T  35829470 tgtatatcttttttatttgtccaatattgttccatca 35829506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 43240869 - 43240917
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaatatgat 146  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||    
T  43240869 aaaacacctgaggctcttctccatttcaaccacccagcttgaatatgat 43240917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 146 - 276
Target Start/End: Original strand, 37463741 - 37463872
Alignment:
Q  146 ttgacccttggtgcaatcatattgttttcggaaattg-tcggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagc 244  Q
    |||||||||||||||||| ||||||| | ||||| |  ||||| | ||| ||| |  ||||||||||||||| ||||| |||||||| ||| ||||||||    
T  37463741 ttgacccttggtgcaatcctattgttataggaaaatcatcggtaggcccctcctgcatcctcacactagttgcagctccctcatacacatccttgatagc 37463840  T
Q  245 tccaatataaacaatcttaacctttttcttct 276  Q
    || | ||||| ||||| |||||  ||||||||    
T  37463841 tctagtataagcaatcctaacccctttcttct 37463872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 22089888 - 22089844
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    |||||| || |||||||||||||||||||||||||||||||||||    
T  22089888 aaaacatctgagactcttctccatttcaaccacccagcttgaata 22089844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 49347881 - 49347925
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||||| || ||||||||||||||||||||||||||||||||    
T  49347881 aaaacacctgaggctcttctccatttcaaccacccagcttgaata 49347925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 51441252 - 51441300
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaatatgat 146  Q
    ||||||| | || ||||||||||||||||||||||||||||||||||||    
T  51441252 aaaacacttgaggctcttctccatttcaaccacccagcttgaatatgat 51441300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 95 - 142
Target Start/End: Original strand, 32083230 - 32083277
Alignment:
Q  95 cataaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    |||| ||||||| || ||||||||||||||||||||||||||||||||    
T  32083230 catagaacacctgaggctcttctccatttcaaccacccagcttgaata 32083277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 1210539 - 1210495
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||||| || ||||||| ||||||||||||||||||||||||    
T  1210539 aaaacacctcaggctcttcttcatttcaaccacccagcttgaata 1210495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 204 - 311
Target Start/End: Complemental strand, 7813840 - 7813732
Alignment:
Q  204 ctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttct-tattgctttccacaaaatctctctag 302  Q
    |||| |||||| ||||||||||||||||| || |||||| ||| ||||||| || || ||||   |||||||| || || |||||| |||||||||||||    
T  7813840 ctcatactagtcgaagctctctcatacatgtccttgataactctaatataagcagtcgtaacacatttcttctctagtgttttccataaaatctctctag 7813741  T
Q  303 ctactttat 311  Q
      |||||||    
T  7813740 acactttat 7813732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 8671714 - 8671670
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||||| || ||||||||||||| ||||||||||||||||||    
T  8671714 aaaacacctgagtctcttctccattttaaccacccagcttgaata 8671670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 9592528 - 9592484
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||||  |||||||||||||||||||||||||| ||||||||    
T  9592528 aaaacacccgagactcttctccatttcaaccacccaacttgaata 9592484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 418 - 466
Target Start/End: Complemental strand, 11681945 - 11681897
Alignment:
Q  418 acataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 466  Q
    |||||||||||| ||| ||||| |||| |||||||||||||||||||||    
T  11681945 acataaaaccaatttgattatcggtaactcaagtctcttttcttagtct 11681897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 30202618 - 30202662
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||||| || |||||||||||||||||||||| |||||||||    
T  30202618 aaaacacctgaggctcttctccatttcaaccacccggcttgaata 30202662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 51601852 - 51601808
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||||| ||||||||||| ||||| |||||||||||||||||    
T  51601852 aaaacacctgagactcttctctatttccaccacccagcttgaata 51601808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 8391564 - 8391525
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagctt 137  Q
    ||||||||| || |||||||||||||||||||||||||||    
T  8391564 aaaacacctgaggctcttctccatttcaaccacccagctt 8391525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 92 - 142
Target Start/End: Complemental strand, 19936322 - 19936272
Alignment:
Q  92 tcacataaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||||||||| | ||  |||| ||||||||||||||||||||||||||    
T  19936322 tcacataaaacacttgaggttcttatccatttcaaccacccagcttgaata 19936272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 92 - 146
Target Start/End: Complemental strand, 51234414 - 51234360
Alignment:
Q  92 tcacataaaacaccttagactcttctccatttcaaccacccagcttgaatatgat 146  Q
    |||||||||| |||| || || |||||||||||||||||||| ||||||| ||||    
T  51234414 tcacataaaagacctgaggctattctccatttcaaccacccaacttgaatttgat 51234360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 96; Significance: 9e-47; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 144 - 466
Target Start/End: Complemental strand, 30873 - 30544
Alignment:
Q  144 gattgacccttggtgcaatcatattgttttcggaaattgt-cggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgata 242  Q
    ||||||||||||||||| || ||||||||| ||||| | | |||| | ||||||| | |||||||||||||| ||||||| |||||||||||| ||||||    
T  30873 gattgacccttggtgcagtcctattgttttgggaaaatcttcggtagtcccatcctgcgtcctcacactagtcgaagctccctcatacatatccttgata 30774  T
Q  243 gctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaacca 341  Q
    || | ||||||  ||||| |||||  |||||||||    |||||||||||||||||||| | |||| ||||||||| ||| ||||| ||||||||||| |    
T  30773 gccctaatataggcaatcctaacccctttcttcttcggggctttccacaaaatctctctcggtactctatcatacgccttttccaattcaatgaaaacta 30674  T
Q  342 agtgcaagtcttttttatccatccaatatcgttccatca------ga--taagtagatcacgcttccatagttgacctcccaaaacataaaaccaaattg 433  Q
    |||||||||||||||||||| ||  |||||| | |||||      ||  |||||||||   ||||||||||| |||||||| |  |||||||||||||||    
T  30673 agtgcaagtcttttttatccgtctgatatcgcttcatcacgcgttgaagtaagtagat--tgcttccatagtcgacctccc-aggcataaaaccaaattg 30577  T
Q  434 gttatcagtaaatcaagtctcttttcttagtct 466  Q
    |||||| |||| || |||||| |||||||||||    
T  30576 gttatccgtaactcgagtctcctttcttagtct 30544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 31262 - 31218
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||| | || ||||||||||||||||||||||||||||||||    
T  31262 aaaacacttgaggctcttctccatttcaaccacccagcttgaata 31218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 146 - 466
Target Start/End: Complemental strand, 24177927 - 24177600
Alignment:
Q  146 ttgacccttggtgcaatcatattgttttcggaaattgt-cggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagc 244  Q
    |||||||||||||||||| ||||||| ||||||| | | |||| | ||||||| | |||||||||||||| ||||||| |||||||||||| ||||||||    
T  24177927 ttgacccttggtgcaatcctattgttatcggaaaatcttcggtagtcccatcctgcgtcctcacactagtcgaagctccctcatacatatccttgatagc 24177828  T
Q  245 tccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaag 343  Q
    || ||||||  ||||  |||||  ||||||||  |  |||||||||||||||||||| | |||| ||||||| | ||| | ||||||||||||||| |||    
T  24177827 tctaatataggcaatgctaacccctttcttctccagggctttccacaaaatctctctcggtactctatcatatgcctttttcaaatcaatgaaaactaag 24177728  T
Q  344 tgcaagtcttttttatccatccaatatcgttccatca------ga--taagtagatcacgcttccatagttgacctcccaaaacataaaaccaaattggt 435  Q
    |||||||||||||||||| ||| |||||| |||||||      ||  |||||||||   |||||| |||| ||||| || |  |||||||||||||||||    
T  24177727 tgcaagtcttttttatccgtccgatatcgctccatcatgcgtcgaagtaagtagat--tgcttccgtagtcgaccttcc-aggcataaaaccaaattggt 24177631  T
Q  436 tatcagtaaatcaagtctcttttcttagtct 466  Q
    |||| |||| || |||||| |||||||||||    
T  24177630 tatccgtaactcgagtctcctttcttagtct 24177600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 146 - 466
Target Start/End: Complemental strand, 20318394 - 20318067
Alignment:
Q  146 ttgacccttggtgcaatcatattgttttcggaaattgt-cggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagc 244  Q
    |||||||||||||||||| ||||||| | ||||| | | |||| | ||||||| | |||||||||||||| ||| ||| |||||||||||| ||||||||    
T  20318394 ttgacccttggtgcaatcctattgttatgggaaaatcttcggtagtcccatcctgcgtcctcacactagtcgaaactccctcatacatatccttgatagc 20318295  T
Q  245 tccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaag 343  Q
       ||||||  ||||| |||||  ||||||||  |  |||||||||||||||||||  | |||| ||||||||| ||| ||||||| ||||||||| |||    
T  20318294 cataatataggcaatcctaacccctttcttctccagggctttccacaaaatctctcccggtactctatcatacgccttttccaaattaatgaaaactaag 20318195  T
Q  344 tgcaagtcttttttatccatccaatatcgttccatca------ga--taagtagatcacgcttccatagttgacctcccaaaacataaaaccaaattggt 435  Q
    |||||||||| ||||||| ||| |||||| |||||||      ||  |||||||||   ||||||||||| |||||||| |  |||||||||||||||||    
T  20318194 tgcaagtcttatttatccgtccgatatcgctccatcacgcgtcgaagtaagtagat--tgcttccatagtcgacctccc-aggcataaaaccaaattggt 20318098  T
Q  436 tatcagtaaatcaagtctcttttcttagtct 466  Q
    |||| |||| || |||||| |||||||||||    
T  20318097 tatctgtaactcgagtctcctttcttagtct 20318067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 146 - 466
Target Start/End: Original strand, 2076353 - 2076680
Alignment:
Q  146 ttgacccttggtgcaatcatattgttttcggaaattgt-cggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagc 244  Q
    |||||||||||||||||| ||||||| | ||||| | | |||| | | ||||  | |||||||||||||| ||||||| |||||||||||| ||||||||    
T  2076353 ttgacccttggtgcaatcctattgttgtgggaaaatcttcggtagtctcatcatgcgtcctcacactagtcgaagctccctcatacatatccttgatagc 2076452  T
Q  245 tccaatataaacaatcttaacctttttcttct-tattgctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaag 343  Q
        |||||  ||||| |||||  ||  |||| ||  |||| ||||||||||||||| | |||| ||||||||| ||| ||||||||||||||||  |||    
T  2076453 catgatataggcaatcctaaccccttatttctctagggcttgccacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaattaag 2076552  T
Q  344 tgcaagtcttttttatccatccaatatcgttccatc--------agataagtagatcacgcttccatagttgacctcccaaaacataaaaccaaattggt 435  Q
    |||||||||||||||||| ||| |||||| ||||||        |  |||||||||   ||||||||||| |||||||| |  |||||||||||||||||    
T  2076553 tgcaagtcttttttatccgtccgatatcgctccatcccgcgtcgaagtaagtagat--tgcttccatagtcgacctccc-aggcataaaaccaaattggt 2076649  T
Q  436 tatcagtaaatcaagtctcttttcttagtct 466  Q
    |||| |||| || |||||| |||||||||||    
T  2076650 tatccgtaactcgagtctcctttcttagtct 2076680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 309 - 462
Target Start/End: Complemental strand, 27196 - 27039
Alignment:
Q  309 tatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatcaga--------taagtagatcacgcttcc 400  Q
    |||||| || ||||||||||||||||||||| ||||||||||||||||||||| | | |||||| | ||||| |        |||||||||  |||||||    
T  27196 tatcattcgccttctccaaatcaatgaaaactaagtgcaagtcttttttatccgttcgatatcgcttcatcacacgttgaagtaagtagat--cgcttcc 27099  T
Q  401 atagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttctta 462  Q
    ||||| || || |  || |||||||||||| ||||||||||||| |||||||| ||||||||    
T  27098 atagtcgatcttc--aagcataaaaccaaaatggttatcagtaactcaagtcttttttctta 27039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 282 - 356
Target Start/End: Complemental strand, 17212533 - 17212459
Alignment:
Q  282 ctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttt 356  Q
    ||||||| |||||||||||||  ||||||||||||||||||| ||||||||||||| | ||||||||||| ||||    
T  17212533 ctttccataaaatctctctaggcactttatcatacgtcttcttcaaatcaatgaaatctaagtgcaagtcatttt 17212459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 146 - 266
Target Start/End: Original strand, 1288468 - 1288589
Alignment:
Q  146 ttgacccttggtgcaatcatattgttttcggaaattgt-cggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagc 244  Q
    |||||||||||||||||| ||||||| | ||||| | | |||| | ||||||| | |||||||||||||| ||||||| |||||||||||| ||||||||    
T  1288468 ttgacccttggtgcaatcctattgttatgggaaaatcttcggtagtcccatcctgcgtcctcacactagtcgaagctccctcatacatatccttgatagc 1288567  T
Q  245 tccaatataaacaatcttaacc 266  Q
     | ||||||  ||||| |||||    
T  1288568 cctaatataggcaatcataacc 1288589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 146 - 253
Target Start/End: Complemental strand, 1274668 - 1274560
Alignment:
Q  146 ttgacccttggtgcaatcatattgttttcggaaattgt-cggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagc 244  Q
    |||||||||||||||||  ||||||| | ||||| | | |||| | ||||||| | |||||||||||||| ||||||| |||||||||||| ||||||||    
T  1274668 ttgacccttggtgcaattctattgttatgggaaaatcttcggtagtcccatcctgcgtcctcacactagtcgaagctccctcatacatatctttgatagc 1274569  T
Q  245 tccaatata 253  Q
     | ||||||    
T  1274568 cctaatata 1274560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 190 - 301
Target Start/End: Complemental strand, 3301207 - 3301095
Alignment:
Q  190 ccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttct-tattgctttcca 288  Q
    |||||||| | |||||||||||||| ||||||| |||||||||||||| |||| ||| ||||||  ||||| | |||  ||||||||  |  ||||||||    
T  3301207 ccccatcctgcgtcctcacactagtcgaagctccctcatacatatcatggataactctaatataggcaatcctcacccctttcttctccaaagctttcca 3301108  T
Q  289 caaaatctctcta 301  Q
    |||||||||||||    
T  3301107 caaaatctctcta 3301095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 20318785 - 20318737
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaatatgat 146  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||    
T  20318785 aaaacacctgaggctcttctccatttcaaccacccagcttgaatatgat 20318737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 146 - 235
Target Start/End: Original strand, 12493241 - 12493331
Alignment:
Q  146 ttgacccttggtgcaatcatattgttttcggaaattgt-cggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatc 235  Q
    |||||||||||||||||| ||||||| | ||||| | | |||| | ||||||| | |||||||||||||| ||||||| ||||||||||||    
T  12493241 ttgacccttggtgcaatcctattgttatgggaaaatattcggtagtcccatcctgcgtcctcacactagtcgaagctccctcatacatatc 12493331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 282 - 363
Target Start/End: Complemental strand, 37123836 - 37123755
Alignment:
Q  282 ctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccat 363  Q
    |||| |||||||||||| |||  ||| ||||||||   |||||||||||||||||||| |||||||  ||||||||||||||    
T  37123836 ctttacacaaaatctctttaggaactctatcatacagtttctccaaatcaatgaaaactaagtgcacatcttttttatccat 37123755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 1275059 - 1275015
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||    
T  1275059 aaaacaccttaggctcttcttcatttcaaccacccagcttgaata 1275015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 10639091 - 10639047
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||||| || ||||||||||||||||||||||||||||||||    
T  10639091 aaaacacctaaggctcttctccatttcaaccacccagcttgaata 10639047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 12492875 - 12492919
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||||| || ||||||||||||||||||||||||||||||||    
T  12492875 aaaacacctgaggctcttctccatttcaaccacccagcttgaata 12492919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 353
Target Start/End: Complemental strand, 30418662 - 30418593
Alignment:
Q  283 tttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtctt 353  Q
    ||||||||||||||||||||  ||| |||| || ||||||||||||| ||||||||| ||||| |||||||    
T  30418662 tttccacaaaatctctctaggcactctatc-tatgtcttctccaaattaatgaaaactaagtggaagtctt 30418593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 146
Target Start/End: Complemental strand, 36200582 - 36200528
Alignment:
Q  92 tcacataaaacaccttagactcttctccatttcaaccacccagcttgaatatgat 146  Q
    ||||||||||||| | || ||||||||||||||||||||||| ||| ||||||||    
T  36200582 tcacataaaacacatgagtctcttctccatttcaaccacccaacttaaatatgat 36200528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 3394504 - 3394460
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||||| || ||| ||||||||||||||||||||||||||||    
T  3394504 aaaacacctgaggctcatctccatttcaaccacccagcttgaata 3394460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 24178318 - 24178270
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaatatgat 146  Q
    ||||||| | || ||||||||||||||||||||||| ||||||||||||    
T  24178318 aaaacacttgaggctcttctccatttcaaccacccaacttgaatatgat 24178270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 28977345 - 28977389
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||||  || ||||||||||||||||||||||||||||||||    
T  28977345 aaaacacccgaggctcttctccatttcaaccacccagcttgaata 28977389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 466
Target Start/End: Original strand, 1288687 - 1288734
Alignment:
Q  419 cataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 466  Q
    ||||||||||||||||||||| |||| || |||||| |||||||||||    
T  1288687 cataaaaccaaattggttatccgtaactcgagtctcctttcttagtct 1288734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 146
Target Start/End: Complemental strand, 3097041 - 3096922
Alignment:
Q  27 tacaacatcgccggttttacaattgttcaataaaatttacccttaatttgagaggtattaccatttcacataaaacaccttagactcttctccatttcaa 126  Q
    |||||||||| |||| ||||  |||||| |||||| || || | || || || ||||||  ||  ||||||||||||||| || ||||  ||||||||||    
T  3097041 tacaacatcgtcggtcttaccgttgttcgataaaaatttccttcaacttaagcggtattttcacatcacataaaacacctaaggctctcatccatttcaa 3096942  T
Q  127 ccacccagcttgaatatgat 146  Q
    ||||||| ||||||| ||||    
T  3096941 ccacccaacttgaatttgat 3096922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 253
Target Start/End: Complemental strand, 7605809 - 7605754
Alignment:
Q  199 gtgtcctcacactagttgaag-ctctctcatacatatcattgatagctccaatata 253  Q
    ||||||| ||||||||  ||| ||||||||||||||||||||||||||| ||||||    
T  7605809 gtgtcctaacactagtcaaagtctctctcatacatatcattgatagctcgaatata 7605754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 466
Target Start/End: Complemental strand, 25937220 - 25937173
Alignment:
Q  419 cataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 466  Q
    ||||||||||||||||||||||| ||||| |||||| |||| ||||||    
T  25937220 cataaaaccaaattggttatcagaaaatcgagtctcatttcgtagtct 25937173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 92 - 146
Target Start/End: Original strand, 20077299 - 20077353
Alignment:
Q  92 tcacataaaacaccttagactcttctccatttcaaccacccagcttgaatatgat 146  Q
    ||||||||||||||| || ||||||||||||||||||| ||| | |||| |||||    
T  20077299 tcacataaaacacctgaggctcttctccatttcaaccatccaacctgaaaatgat 20077353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 289 - 347
Target Start/End: Original strand, 31503071 - 31503129
Alignment:
Q  289 caaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgca 347  Q
    |||||||| |||||  | ||||||||| ||||||||||||||||| ||||| |||||||    
T  31503071 caaaatctttctagacaatttatcatatgtcttctccaaatcaataaaaactaagtgca 31503129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 317 - 363
Target Start/End: Complemental strand, 35685088 - 35685042
Alignment:
Q  317 gtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccat 363  Q
    ||||||||||||||||||||||  ||| | |||||||||||||||||    
T  35685088 gtcttctccaaatcaatgaaaattaagcgtaagtcttttttatccat 35685042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 2075962 - 2076006
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||||| || ||||||| ||||||||||||||| ||||||||    
T  2075962 aaaacacctgaggctcttcttcatttcaaccacccaacttgaata 2076006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 3301643 - 3301599
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||||| || ||| |||| |||||||||||||||||||||||    
T  3301643 aaaacacctgaggctcatctctatttcaaccacccagcttgaata 3301599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 34272816 - 34272772
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||||| || ||||||||||||| ||||||||| ||||||||    
T  34272816 aaaacacctgaggctcttctccattttaaccacccaacttgaata 34272772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 1e-42; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 146 - 380
Target Start/End: Original strand, 36566120 - 36566356
Alignment:
Q  146 ttgacccttggtgcaatcatattgttttcggaaattgt-cggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagc 244  Q
    |||||||||||||||||| ||||||| | ||||| | | | || | | ||||| | |||||||||||||| ||||||| |||||||||||| ||||||||    
T  36566120 ttgacccttggtgcaatcctattgttatgggaaaatcttcagtagtctcatcctgcgtcctcacactagtcgaagctccctcatacatatccttgatagc 36566219  T
Q  245 tccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaag 343  Q
     | ||||||  ||||| |||||  ||||||||  |  |||||||||||||||||||| | |||| ||||||||| ||| ||||||||||||||||| |||    
T  36566220 cctaatataggcaatcctaacccctttcttctccagggctttccacaaaatctctctcgatactctatcatacgccttttccaaatcaatgaaaactaag 36566319  T
Q  344 tgcaagtcttttttatccatccaatatcgttccatca 380  Q
    |||||||||||||||||| ||| |||||| |||||||    
T  36566320 tgcaagtcttttttatccgtccgatatcgctccatca 36566356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 201 - 372
Target Start/End: Original strand, 15216207 - 15216378
Alignment:
Q  201 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttcttattgctttccacaaaatctctct 300  Q
    |||||||||||||| ||||||| |||||| ||||||| |||||||| ||||||  ||||| |  ||  |||||||| || | |||||||||||||| |||    
T  15216207 gtcctcacactagtcgaagctccctcatatatatcatagatagctctaatataggcaatcctcgcccctttcttctcatggatttccacaaaatctatct 15216306  T
Q  301 agctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcg 372  Q
    || |||| ||||||||| ||| | ||||||||||||||| || || ||||||||||||||||| | ||||||    
T  15216307 aggtactctatcatacgccttattcaaatcaatgaaaactaaatgtaagtcttttttatccattcgatatcg 15216378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 146 - 466
Target Start/End: Complemental strand, 36544555 - 36544228
Alignment:
Q  146 ttgacccttggtgcaatcatattgttttcggaaattgt-cggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagc 244  Q
    |||||||||||||||||| ||||||| | ||||| | | |||| | ||||||| | |||||||||||||| ||||||| |||||| ||||| ||||||||    
T  36544555 ttgacccttggtgcaatcctattgttatgggaaaatcttcggtagtcccatcctgcgtcctcacactagtcgaagctccctcatatatatccttgatagc 36544456  T
Q  245 tccaatataaacaatct-taacctttttcttctt-attgctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaa 342  Q
     | ||||||  |||  | |||||  ||||||||  |  |||||||||||||||| ||| | |||| ||||||||| ||| ||||||||||||||||| ||    
T  36544455 cctaatataggcaaattctaacccctttcttctccagggctttccacaaaatctatctcggtactctatcatacgcctt-tccaaatcaatgaaaactaa 36544357  T
Q  343 gtgcaagtcttttttatccatccaatatcgttccatca------ga--taagtagatcacgcttccatagttgacctcccaaaacataaaaccaaattgg 434  Q
    |||||| |||||||||||| ||  |||||| || ||||      ||  |||||||||   ||||||||||| |||||||| |  ||||||||||||||||    
T  36544356 gtgcaaatcttttttatccgtcagatatcgctcaatcacgcgtcgaagtaagtagat--tgcttccatagtcgacctccc-aggcataaaaccaaattgg 36544260  T
Q  435 ttatcagtaaatcaagtctcttttcttagtct 466  Q
    ||||| |||| |  |||||| |||||||||||    
T  36544259 ttatccgtaacttgagtctcctttcttagtct 36544228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 201 - 466
Target Start/End: Original strand, 42854948 - 42855221
Alignment:
Q  201 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttcttattg-ctttccacaaaatctctc 299  Q
    |||||||||||||| ||||||| ||||||||||||   |||||||| ||| ||  ||||| | |||  ||||||||    | ||||||||||||| ||||    
T  42854948 gtcctcacactagtcgaagctccctcatacatatcccggatagctctaatttaggcaatcctcacccctttcttctacgaggctttccacaaaatatctc 42855047  T
Q  300 tagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtc--ttttttatccatccaatatcgttccatca------ga--taagtag 389  Q
    |||  ||| ||||||| | ||||||||||||||||||||| ||||| |||||  |||||||||| |||||||||| |||||||      ||  |||||||    
T  42855048 taggcactctatcatatgccttctccaaatcaatgaaaactaagtgtaagtcttttttttatccgtccaatatcgctccatcacgcgtcgaagtaagtag 42855147  T
Q  390 atcacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 466  Q
    ||  |||||| ||||| |||||||| |  ||||||||||||||||||||| ||||  | ||||||||||||||||||    
T  42855148 at--cgcttcaatagtcgacctccc-aggcataaaaccaaattggttatccgtaacgcgagtctcttttcttagtct 42855221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 4032982 - 4033030
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaatatgat 146  Q
    ||||||||| || ||||||||||||||||||||||| ||||||||||||    
T  4032982 aaaacacctgaggctcttctccatttcaaccacccaacttgaatatgat 4033030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 320 - 380
Target Start/End: Complemental strand, 6184887 - 6184827
Alignment:
Q  320 ttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca 380  Q
    |||||||||||||||||||| ||||| ||||||||||||||  ||| |||||| |||||||    
T  6184887 ttctccaaatcaatgaaaactaagtgtaagtcttttttatctgtccgatatcgctccatca 6184827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 36565729 - 36565773
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||||| || ||||||||||||||||||||||||||||||||    
T  36565729 aaaacacctgaggctcttctccatttcaaccacccagcttgaata 36565773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 92 - 131
Target Start/End: Original strand, 10824570 - 10824609
Alignment:
Q  92 tcacataaaacaccttagactcttctccatttcaaccacc 131  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  10824570 tcacataaaacacctgagactcttctccatttcaaccacc 10824609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 357
Target Start/End: Original strand, 11130955 - 11131029
Alignment:
Q  283 tttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtctttttt 357  Q
    ||||||||||||||||||    ||||||||||||| ||| ||||||||||||||||| |  ||||||| ||||||    
T  11130955 tttccacaaaatctctctgaaaactttatcatacgccttatccaaatcaatgaaaactagatgcaagtatttttt 11131029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 363
Target Start/End: Complemental strand, 25984788 - 25984734
Alignment:
Q  309 tatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccat 363  Q
    ||||||| | |||||||||||||||| |||||||||||||||| |||| ||||||    
T  25984788 tatcatatgccttctccaaatcaatggaaaccaagtgcaagtccttttgatccat 25984734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 142
Target Start/End: Complemental strand, 37077565 - 37077515
Alignment:
Q  92 tcacataaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||| ||||||||| |||||||||||||||||||||||  ||||||||||    
T  37077565 tcacacaaaacacctgagactcttctccatttcaaccacttagcttgaata 37077515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 92 - 141
Target Start/End: Complemental strand, 43732404 - 43732355
Alignment:
Q  92 tcacataaaacaccttagactcttctccatttcaaccacccagcttgaat 141  Q
    ||||||| ||||| | |||||||||||||||||||||||||| |||||||    
T  43732404 tcacatataacacttgagactcttctccatttcaaccacccaacttgaat 43732355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 39946651 - 39946607
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||||| || ||||||||||||||||||| ||||||||||||    
T  39946651 aaaacacctaaggctcttctccatttcaaccatccagcttgaata 39946607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 42854492 - 42854536
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||| | || ||||||||||||||||||||||||||||||||    
T  42854492 aaaacacatgaggctcttctccatttcaaccacccagcttgaata 42854536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 470
Target Start/End: Original strand, 41445401 - 41445452
Alignment:
Q  419 cataaaaccaaattggttatcagtaaatcaagtctcttttcttagtctccat 470  Q
    ||||||||||||||||||| | |||| || ||| ||||||||||||||||||    
T  41445401 cataaaaccaaattggttagccgtaactcgagtgtcttttcttagtctccat 41445452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 92 - 142
Target Start/End: Original strand, 30113678 - 30113728
Alignment:
Q  92 tcacataaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    |||||||||||||||  |||||||||||||||||||||   ||||||||||    
T  30113678 tcacataaaacacctgcgactcttctccatttcaaccatttagcttgaata 30113728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 13589237 - 13589188
Alignment:
Q  95 cataaaacaccttagactcttctccatttcaaccacccagcttgaatatg 144  Q
    |||||||||| | || ||||||||||||||||||| ||| ||||||||||    
T  13589237 cataaaacacatcaggctcttctccatttcaaccatccaccttgaatatg 13589188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 280 - 348
Target Start/End: Original strand, 30579237 - 30579305
Alignment:
Q  280 tgctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaa 348  Q
    ||||||| |||||||||||||||  ||| ||| || || ||||||||||| ||| ||||| ||||||||    
T  30579237 tgctttcgacaaaatctctctaggcactctatgattcgccttctccaaatgaattaaaactaagtgcaa 30579305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 36544946 - 36544902
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||||| || ||||| ||||||||||||||||| ||||||||    
T  36544946 aaaacacctgaggctcttatccatttcaaccacccaacttgaata 36544902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 39706912 - 39706872
Alignment:
Q  211 tagttgaagctctctcatacatatcattgatagctccaata 251  Q
    |||||||||||| |||||||||||| |||||||||| ||||    
T  39706912 tagttgaagctccctcatacatatctttgatagctctaata 39706872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 8e-41; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 146 - 466
Target Start/End: Original strand, 51448588 - 51448915
Alignment:
Q  146 ttgacccttggtgcaatcatattgttttcggaaattgt-cggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagc 244  Q
    |||||||||||||||||| ||||||| | ||||| | | |||| | ||||||| | |||||||||| ||| ||||||| |||||||||||| ||||||||    
T  51448588 ttgacccttggtgcaatcctattgttatgggaaaatcttcggtagtcccatcctgcgtcctcacaccagtcgaagctccctcatacatatccttgatagc 51448687  T
Q  245 tccaatataaacaatcttaacctttttcttcttattg-ctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaag 343  Q
     | ||||||  ||| | |||||  ||||||||    | ||||||||||||||||||| | |||| ||||||||| ||| ||||||||||||||||| |||    
T  51448688 cctaatataggcaaacctaacccctttcttctcccgggctttccacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaag 51448787  T
Q  344 tgcaagtcttttttatccatccaatatcgttccatca------ga--taagtagatcacgcttccatagttgacctcccaaaacataaaaccaaattggt 435  Q
    |||||||||||||||||| ||| |||||| |||||||      ||  ||| |||||   ||||||||||| |||||||| |   ||||||||||||||||    
T  51448788 tgcaagtcttttttatccgtccgatatcgctccatcacgcgtcgaagtaaatagat--tgcttccatagtcgacctccc-aggtataaaaccaaattggt 51448884  T
Q  436 tatcagtaaatcaagtctcttttcttagtct 466  Q
    |||| |||| || |||||| |||||||||||    
T  51448885 tatccgtaactcgagtctcctttcttagtct 51448915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 146 - 380
Target Start/End: Complemental strand, 52138231 - 52137995
Alignment:
Q  146 ttgacccttggtgcaatcatattgttttcggaaattgt-cggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagc 244  Q
    |||| ||||||||||||  ||||||| | ||||| | | |||| | ||||||| | |||||||||||||| ||||||| |||||||||||| ||||||||    
T  52138231 ttgatccttggtgcaattctattgttatgggaaaatcttcggtagtcccatcctgcgtcctcacactagtcgaagctccctcatacatatccttgatagc 52138132  T
Q  245 tccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaag 343  Q
     | ||||||  ||||| |||||  ||||||||  |  |||||||||||||||||||| | |||| ||||||||| ||| ||||||||||||||||| |||    
T  52138131 cctaatataggcaatcctaacccctttcttctccagggctttccacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaag 52138032  T
Q  344 tgcaagtcttttttatccatccaatatcgttccatca 380  Q
    |||||||||||||||||  ||| |||||| |||||||    
T  52138031 tgcaagtcttttttatctgtccgatatcgctccatca 52137995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 152 - 357
Target Start/End: Complemental strand, 48221178 - 48220971
Alignment:
Q  152 cttggtgcaatcatattgttttcggaaatt-gtcggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagctccaat 250  Q
    |||||||||||| ||||||| | | ||||| |||||||| | ||||| |  |||||||||||| |||| |   |||||||||||| |||||||||| | |    
T  48221178 cttggtgcaatcctattgttatggaaaattcgtcggtggtcgcatcctgcatcctcacactagctgaatccacctcatacatatctttgatagctcgagt 48221079  T
Q  251 ataaacaatcttaacctttttcttctt-attgctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaag 349  Q
    ||||  |||  |||| | |||| | || |  |||||||| ||||| |||||||  | | |||||||||| |||||||||||||||||||| |||||||||    
T  48221078 ataagtaattataacttatttccttttcagggctttccataaaatatctctaggcaatctatcatacgttttctccaaatcaatgaaaactaagtgcaag 48220979  T
Q  350 tctttttt 357  Q
    ||||||||    
T  48220978 tctttttt 48220971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 190 - 339
Target Start/End: Complemental strand, 9258244 - 9258095
Alignment:
Q  190 ccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttcttattgctttccac 289  Q
    |||||||  ||||||||||| |||| |||||||||||||||||||| || ||||||| |||||| |||||| ||||| |||  |    |  ||||||||     
T  9258244 ccccatcatgtgtcctcacaatagtcgaagctctctcatacatatcgtttatagctctaatatagacaatcctaaccctttattatccagagctttccat 9258145  T
Q  290 aaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaac 339  Q
    |||||||||||||  | ||||||||| |  ||||||||||||||||||||    
T  9258144 aaaatctctctaggaattttatcatatgcgttctccaaatcaatgaaaac 9258095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 201 - 361
Target Start/End: Complemental strand, 38849441 - 38849288
Alignment:
Q  201 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttct-tattgctttccacaaaatctctc 299  Q
    |||||||||||||| ||||||| |||||||||||| |||||||||| ||||||  ||||| |||||  |||||||| ||  ||||        |||||||    
T  38849441 gtcctcacactagtcgaagctccctcatacatatccttgatagctctaatataggcaatcataacccctttcttctatagggctt--------atctctc 38849350  T
Q  300 tagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatcc 361  Q
    ||   ||| |||| |||| ||||||||||||||||||||| ||||| |||| ||||||||||    
T  38849349 tacaaactctatcttacgccttctccaaatcaatgaaaactaagtgtaagtgttttttatcc 38849288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 319 - 364
Target Start/End: Original strand, 50630373 - 50630418
Alignment:
Q  319 cttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatc 364  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  50630373 cttctccaaatcaatgaaaactaagtgcaagtcttttttatccatc 50630418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 25191173 - 25191129
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||||| |||||||||||||||||||||||||||||||||||    
T  25191173 aaaacacctgagactcttctccatttcaaccacccagcttgaata 25191129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 47542199 - 47542247
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaatatgat 146  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||    
T  47542199 aaaacacctgaggctcttctccatttcaaccacccagcttgaatatgat 47542247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 194 - 261
Target Start/End: Complemental strand, 19736569 - 19736502
Alignment:
Q  194 atcccgtgtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatct 261  Q
    |||| ||||||||| |||||| ||||||| |||||||||||| |||||||||| || |||||||||||    
T  19736569 atcctgtgtcctcatactagtcgaagctccctcatacatatccttgatagctctaacataaacaatct 19736502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 95 - 142
Target Start/End: Complemental strand, 30345324 - 30345277
Alignment:
Q  95 cataaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||    
T  30345324 cataaaacacctgagactcttctccatttcaaccacccaacttgaata 30345277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 28245231 - 28245187
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    |||||| || |||||||||||||||||||||||||||||||||||    
T  28245231 aaaacaactgagactcttctccatttcaaccacccagcttgaata 28245187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 38849888 - 38849844
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||||| || ||||||||||||||||||||||||||||||||    
T  38849888 aaaacacctgaggctcttctccatttcaaccacccagcttgaata 38849844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 194 - 261
Target Start/End: Complemental strand, 19757387 - 19757320
Alignment:
Q  194 atcccgtgtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatct 261  Q
    |||| ||||||||| |||||| ||||||| ||| |||||||| |||||||||| || |||||||||||    
T  19757387 atcctgtgtcctcatactagtcgaagctccctcgtacatatccttgatagctctaacataaacaatct 19757320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 139
Target Start/End: Complemental strand, 52138591 - 52138553
Alignment:
Q  101 acaccttagactcttctccatttcaaccacccagcttga 139  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  52138591 acacctgagactcttctccatttcaaccacccagcttga 52138553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 51448197 - 51448241
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||||  || ||||||||||||||||||||||||||||||||    
T  51448197 aaaacacccgaggctcttctccatttcaaccacccagcttgaata 51448241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 1e-39; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 146 - 379
Target Start/End: Complemental strand, 9706178 - 9705943
Alignment:
Q  146 ttgacccttggtgcaatcatattgttttcggaaattgt-cggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagc 244  Q
    ||||||||||||||| |||||||||| | ||||| | | ||||  || ||||| | |||||||||||||| ||||||| |||||||||||| | || |||    
T  9706178 ttgacccttggtgcagtcatattgttatgggaaaatctacggtatcctcatcctgcgtcctcacactagtcgaagctccctcatacatatcctggaaagc 9706079  T
Q  245 tccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaag 343  Q
    || ||| ||  ||||| | |||  ||||||||  |  |||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| |||    
T  9706078 tctaatttaggcaatcctcacccctttcttctacagggctttccacaaaatctctctaggtactctatcatacgccttctccaaatcaatgaaaactaag 9705979  T
Q  344 tgcaagtcttttttatccatccaatatcgttccatc 379  Q
    || ||||||||||||||| ||| |||||| ||||||    
T  9705978 tgtaagtcttttttatccgtccgatatcgctccatc 9705943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 202 - 466
Target Start/End: Original strand, 5260184 - 5260454
Alignment:
Q  202 tcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttct-tattgctttccacaaaatctctct 300  Q
    ||||||||||||||||||||| |||||||||||| |  ||||||| ||||||| ||||| | |||  |||||| | ||  ||||||||| ||||||||||    
T  5260184 tcctcacactagttgaagctccctcatacatatcctatatagctctaatataagcaatcatcacccctttcttttctagggctttccactaaatctctct 5260283  T
Q  301 agctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatcag--------ataagtagatc 392  Q
    || |||| ||||||||| |||||||||||| |||||||| ||||| ||||||||||||||| ||| |||||| ||||||||        ||||  ||||     
T  5260284 aggtactctatcatacgccttctccaaatcgatgaaaactaagtgtaagtcttttttatccgtccgatatcgctccatcaggcgtcgaaataaagagat- 5260382  T
Q  393 acgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 466  Q
     |||||||||| | |||||||| | |||||||||||||||||||||| ||||    |||||||||||| |||||    
T  5260383 -cgcttccataatcgacctccc-atacataaaaccaaattggttatccgtaacgtgagtctcttttctaagtct 5260454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 201 - 372
Target Start/End: Complemental strand, 6082747 - 6082575
Alignment:
Q  201 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctc 299  Q
    |||||||||||||| ||||||| |||||||||||| ||||||| || ||||||  ||||| |||||  ||||||||  |  |||||||||||||||||||    
T  6082747 gtcctcacactagtcgaagctccctcatacatatccttgatagttctaatataggcaatcctaacccctttcttctccagggctttccacaaaatctctc 6082648  T
Q  300 tagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcg 372  Q
    | | |||| ||||||||  ||| ||||||||||||||||| ||||||||||| ||||||||| ||| ||||||    
T  6082647 tcggtactctatcatacaccttttccaaatcaatgaaaactaagtgcaagtcctttttatccgtccgatatcg 6082575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 146 - 380
Target Start/End: Original strand, 20428516 - 20428752
Alignment:
Q  146 ttgacccttggtgcaatcatattgttttcggaaattgt-cggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagc 244  Q
    ||||||||||||||| || ||||||| | ||||| | | ||||  ||||||||    ||||||||||||| ||||||| | |||||||||| | ||||||    
T  20428516 ttgacccttggtgcagtcctattgttatgggaaaatatacggtatccccatcctacttcctcacactagtcgaagctcccacatacatatcctggatagc 20428615  T
Q  245 tccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaag 343  Q
    || ||||||  ||||| | |||  ||||||||  |  |||||||||||||||||||||| |||| ||||||||| ||||| ||||||||||||||| | |    
T  20428616 tctaatataggcaatcctcacccctttcttctccagggctttccacaaaatctctctaggtactctatcatacgccttctacaaatcaatgaaaactagg 20428715  T
Q  344 tgcaagtcttttttatccatccaatatcgttccatca 380  Q
    || ||||||||||||||| ||| |||||| |||||||    
T  20428716 tgtaagtcttttttatccgtccgatatcgctccatca 20428752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 202 - 380
Target Start/End: Complemental strand, 30670234 - 30670061
Alignment:
Q  202 tcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctct 300  Q
    |||||||||||||  || ||| || ||||||||| | |||||||| ||||||  |||||||||||| ||||||||| |   |||||||||||||||||||    
T  30670234 tcctcacactagtcaaaactcccttatacatatcctggatagctctaatataggcaatcttaacctctttcttcttcaggactttccacaaaatctctct 30670135  T
Q  301 agctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca 380  Q
    ||      ||||| ||| ||||||||||||||||||||| ||||| ||||||||||| ||  ||| |||||| |||||||    
T  30670134 ag------tatcaaacgccttctccaaatcaatgaaaactaagtgtaagtcttttttctctgtccgatatcgctccatca 30670061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 283 - 462
Target Start/End: Complemental strand, 3629530 - 3629346
Alignment:
Q  283 tttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatcaga 382  Q
    |||||||||||||||  ||| |||||||||||||| ||||| ||||||||||||||| ||||| ||||||||||| |   ||| |||||| ||||||| |    
T  3629530 tttccacaaaatctccataggtactttatcatacgccttcttcaaatcaatgaaaactaagtgtaagtcttttttgtttgtccgatatcgctccatcata 3629431  T
Q  383 --------taagtagatcacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttctta 462  Q
            |||||||||||   |||||| || ||||| ||||| ||||||| ||||||| ||||| |||| || ||||||||||||||    
T  3629430 cgccgaagtaagtagatca--tttccattgtcgacct-ccaaagcataaaatcaaattgattatccgtaactcgagtctcttttctta 3629346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 92 - 146
Target Start/End: Complemental strand, 33495997 - 33495943
Alignment:
Q  92 tcacataaaacaccttagactcttctccatttcaaccacccagcttgaatatgat 146  Q
    ||||| |||||| || |||||||||||||||||||||| ||||||||||||||||    
T  33495997 tcacacaaaacatctgagactcttctccatttcaaccatccagcttgaatatgat 33495943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 309 - 358
Target Start/End: Original strand, 2681480 - 2681529
Alignment:
Q  309 tatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtctttttta 358  Q
    ||||||||| ||||||||||||||||||||| |||||||||| |||||||    
T  2681480 tatcatacgccttctccaaatcaatgaaaactaagtgcaagtatttttta 2681529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 607953 - 607909
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||||| || ||||||||||||||||||||||||||||||||    
T  607953 aaaacacctgaggctcttctccatttcaaccacccagcttgaata 607909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 5631612 - 5631568
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||||  |||||||||||||||||||||||||||||||||||    
T  5631612 aaaacacccgagactcttctccatttcaaccacccagcttgaata 5631568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 282 - 359
Target Start/End: Original strand, 2208419 - 2208496
Alignment:
Q  282 ctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttat 359  Q
    ||||||| ||| |||||||||  | | ||||||||  ||||||||||||||||||||| |||| |||||| |||||||    
T  2208419 ctttccaaaaagtctctctagacattctatcatacaccttctccaaatcaatgaaaactaagtacaagtcgtttttat 2208496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 177 - 246
Target Start/End: Original strand, 2680958 - 2681027
Alignment:
Q  177 aaattgtcggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagctc 246  Q
    ||||| ||||| ||||||||| |||| ||||||||||| |||||||  |||| |||||| ||||||||||    
T  2680958 aaattttcggtagccccatcctgtgttctcacactagtcgaagctccttcatgcatatccttgatagctc 2681027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 5258638 - 5258682
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||| | || ||||||||||||||||||||||||||||||||    
T  5258638 aaaacacatgaggctcttctccatttcaaccacccagcttgaata 5258682  T

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Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 9706570 - 9706526
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||||| |  ||||||||||||||||||||||||||||||||    
T  9706570 aaaacacctgatgctcttctccatttcaaccacccagcttgaata 9706526  T

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Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 14030600 - 14030558
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaa 140  Q
    ||||||||| ||||| ||||||||||||||||||||| |||||    
T  14030600 aaaacacctgagactattctccatttcaaccacccagtttgaa 14030558  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 10100345 - 10100389
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||| | || |||||||||||| |||||||||||||||||||    
T  10100345 aaaacacatgaggctcttctccattccaaccacccagcttgaata 10100389  T

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Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 320 - 380
Target Start/End: Original strand, 10864675 - 10864735
Alignment:
Q  320 ttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca 380  Q
    |||| |||| |||||||||| |||| ||||| ||||| |||||||  ||||||||||||||    
T  10864675 ttcttcaaaacaatgaaaactaagttcaagtttttttgatccatcggatatcgttccatca 10864735  T

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Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 20428124 - 20428164
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttg 138  Q
    ||||||||  || ||||||||||||||||||||||||||||    
T  20428124 aaaacacccgaggctcttctccatttcaaccacccagcttg 20428164  T

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Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 30679268 - 30679224
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||||| || |||||||| |||||||||||||| ||||||||    
T  30679268 aaaacacctgagcctcttctctatttcaaccacccaacttgaata 30679224  T

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Target: scaffold0113 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 146 - 444
Target Start/End: Original strand, 13135 - 13442
Alignment:
Q  146 ttgacccttggtgcaatcatattgttttcggaaattgt-cggtggccccatcccgtgtcctcacactagttgaagctctctcata--catatcattgata 242  Q
    |||||||||||||||||| ||||||| | ||||| | | |||| | ||||||  | |||||||||||||| ||||||| ||||||  |||||| ||||||    
T  13135 ttgacccttggtgcaatcctattgttatgggaaaatcttcggtagtcccatcttgcgtcctcacactagtcgaagctccctcatatacatatccttgata 13234  T
Q  243 gctccaatataaacaatcttaacctttttcttcttattg-ctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaacca 341  Q
    |||| ||||||  ||||||||||||  |||||||    | |||||||||||||||||||||  ||| ||||||||| ||||||||||||||||||||| |    
T  13235 gctctaatataggcaatcttaacctcgttcttctccaggactttccacaaaatctctctaggaactctatcatacgccttctccaaatcaatgaaaacta 13334  T
Q  342 agtgcaagtcttttttatccatccaatatcgttccatca------ga--taagtagatcacgcttccatagttgacctcccaaaacataaaaccaaattg 433  Q
    |||| |||||||| |||||| ||  |||||| |||| ||      ||  |||||||||  || ||||||||| |||||||| || |||||||||||||||    
T  13335 agtgtaagtctttattatccgtcatatatcgctccaccacgcgtcgaagtaagtagat--cgtttccatagtcgacctccc-aagcataaaaccaaattg 13431  T
Q  434 gttatcagtaa 444  Q
    |||||| ||||    
T  13432 gttatccgtaa 13442  T

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Target: scaffold0045 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 309 - 466
Target Start/End: Original strand, 90134 - 90296
Alignment:
Q  309 tatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatcaga--------taagtagatcacgcttcc 400  Q
    ||||||||| ||||||||||||||||||||| ||||| ||||||||||||||| ||| ||| || || | || |        |||||||||||  |||||    
T  90134 tatcatacgccttctccaaatcaatgaaaactaagtgtaagtcttttttatccgtccgataacgctcgaccacatgtcgaattaagtagatca--cttcc 90231  T
Q  401 atagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 466  Q
    ||||||||||||||    ||||||| ||||||||||||| |||| || ||||||||||||||||||    
T  90232 atagttgacctccc-tggcataaaatcaaattggttatccgtaactcgagtctcttttcttagtct 90296  T

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Target: scaffold0171 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 219 - 380
Target Start/End: Complemental strand, 5778 - 5614
Alignment:
Q  219 gctctctcatacat--atcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctctagctactttatcata 315  Q
    ||||||||||||||  ||| |||||||||| |||||| | |||| ||||| |||||||||  |  | |||||| |||||||||| |   ||| |||||||    
T  5778 gctctctcatacatgtatccttgatagctctaatatacataatcctaacccttttcttctccagagttttccataaaatctctcgacacactatatcata 5679  T
Q  316 cgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca 380  Q
    || ||||||||||| ||||||||| |||||| | | |||||||||  || ||||||| |||||||    
T  5678 cgccttctccaaataaatgaaaactaagtgcgattgttttttatcagtcaaatatcgctccatca 5614  T

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Target: scaffold0570 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 2758 - 2802
Alignment:
Q  98 aaaacaccttagactcttctccatttcaaccacccagcttgaata 142  Q
    ||||||||| || ||||||||||||||||||||||||||||||||    
T  2758 aaaacacctgaggctcttctccatttcaaccacccagcttgaata 2802  T

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Target: scaffold0286 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 282 - 359
Target Start/End: Original strand, 518 - 595
Alignment:
Q  282 ctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttat 359  Q
    ||||||| ||| |||||||||  | | ||||||||  ||||||||||||||||||||| |||| |||||| |||||||    
T  518 ctttccaaaaagtctctctagacattctatcatacaccttctccaaatcaatgaaaactaagtacaagtcgtttttat 595  T

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