View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21648_high_10 (Length: 446)
Name: NF21648_high_10
Description: NF21648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21648_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 30898668 - 30898311
Alignment:
| Q |
1 |
actctggagcccaaaccaagctgcccttcacctccatagccccaaccccacacctgtcctatatctgaaaaattcagaaagctacaattaatgacatgtc |
100 |
Q |
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| T |
30898668 |
actctggagcccaaaccaagctgcccttcacctccatagccccaaccccacacctgtcctatatctgaaaaattcagaaagctacaattaatgacatgtc |
30898569 |
T |
|
| Q |
101 |
taagactgcatgtctgatcttccatagcacaaaagtgatgcttcaatcaaaagatggtcacattacatgaaattttaagctcgggagaataaatagtcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30898568 |
taagactgcatgtctgatcttccatagcacaaaagtgatgcttcaatcaaaagatggtcacattacatgaaattttaagctcgggagaataaatagtcca |
30898469 |
T |
|
| Q |
201 |
tataaagtcaatacctgacaatactagggtatgacgcccaccggcagcaacacttgttatctttacccctggattcagtgtgacaagacatggcattgct |
300 |
Q |
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| T |
30898468 |
tataaattcaatacctgacaatactagggtatgacgcccaccagcagcaacacttgttatctttacccctggattcagtgtgacaagacatggcattgct |
30898369 |
T |
|
| Q |
301 |
gttagaatatcatcaccagatgacgaggtttgagccgcttgctttgctgaagatactt |
358 |
Q |
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| T |
30898368 |
gttagaatatcatcaccagatgacgaggtttgagccgcttgctttgccgaagatactt |
30898311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 352 - 446
Target Start/End: Original strand, 30898187 - 30898281
Alignment:
| Q |
352 |
gatacttatgctttatctaacaaactgatgtagagtgattttgcaacagtgagctctcgttctcaagtctcaaaatccacaggaggaactgtttc |
446 |
Q |
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| T |
30898187 |
gatacttatgctttatctaacaaactgatgtagagtgattttgcaacagtgagctctcgttctcaagtctcaaaatccacaggaggaactgtttc |
30898281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 23117699 - 23117638
Alignment:
| Q |
10 |
cccaaaccaagctgcccttcacctccatagccccaaccccacacctgtcctatatctgaaaa |
71 |
Q |
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|||||||| ||||| ||||| |||||||||||||||||||| |||||||| | ||||||||| |
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| T |
23117699 |
cccaaacctagctgtccttcgcctccatagccccaaccccagacctgtcccacatctgaaaa |
23117638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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