View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21648_high_19 (Length: 355)
Name: NF21648_high_19
Description: NF21648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21648_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 13 - 346
Target Start/End: Complemental strand, 40293600 - 40293277
Alignment:
| Q |
13 |
gtttgtttaattgtagaatctcaaaattgta-tctatcttgtaagatttacatagtaaaaatgtcctcatctttgaatactatttcatacaggtaagggg |
111 |
Q |
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| T |
40293600 |
gtttgtttaattgtagaatctcaaaattgtaatctatcttgtaagatttacatagtaaaaatgtcctcatctttgaatactatttcatacaggtaagggg |
40293501 |
T |
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| Q |
112 |
ttgtaatacaactactataggatgaaaatgacttcacatgtagaggagatgttttctttttctgattcaatgtaacttcacattccaacaacttgagtgc |
211 |
Q |
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| T |
40293500 |
ttgtaatacaactactataggatgaaaatgacttcacatgt-----------tttctttttctgattcaatgtaacttcacattccaacaacttgagtgc |
40293412 |
T |
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| Q |
212 |
ctgtttcaattagttgaatagaacatgacacagatgattgagaaaatggatgacaatgcaagttcatcaacaaaattagtggttccatacaagatatagg |
311 |
Q |
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| T |
40293411 |
ctgtttcaattagttgaatagaacatgacacagatgattgagaaaatggatgacaatgcaagttcatcaacaaaattagtggttccatacaagatatagg |
40293312 |
T |
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| Q |
312 |
tctatttcatgtgactattgtgtgtgtccctatgc |
346 |
Q |
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| T |
40293311 |
tctatttcatgtgactattgtgtgtgtccctatgc |
40293277 |
T |
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