View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21648_high_23 (Length: 326)
Name: NF21648_high_23
Description: NF21648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21648_high_23 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 38488744 - 38489053
Alignment:
| Q |
1 |
gtcgtaactccagatagattttgtgtcatcggaagttacaatccggtaaatctaaaggacttttgaacatactgaggggaccatagagcaattctcaaac |
100 |
Q |
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| T |
38488744 |
gtcgtaactccagatagattttgtgtcatcggaagttacaatccggtaaatctaaaggacttttgaacatactgaggggaccatagagcaattctcaaac |
38488843 |
T |
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| Q |
101 |
tttggttcaaaatcagaagaatggaaagattactccttgaatgcatcccatgtggccactagttgaagctgcatataattaaatcatgtcgtggcttgca |
200 |
Q |
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| T |
38488844 |
tttggttcaaaatcagaagaatggaaagattactccttgaatgcatcccatgtggccactagttgaagctgcatataattaaatcatgtcgtggcttgca |
38488943 |
T |
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| Q |
201 |
ttttgtcatgttttgtttcaatatcagacaaaagctgtggacttc-aatataaccatacatcagtgtcaatgttcaatattactcttactaccaatcagt |
299 |
Q |
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| T |
38488944 |
ttttgtcatgttttgtttcaatatcagacaaaagctgtggacttcaaatataaccatacatcagtg-----------------tcttactaccaatcagt |
38489026 |
T |
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| Q |
300 |
atatgtatatcaatcaatttatttata |
326 |
Q |
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||||||||||||||||||||||||||| |
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| T |
38489027 |
atatgtatatcaatcaatttatttata |
38489053 |
T |
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