View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21648_high_25 (Length: 301)
Name: NF21648_high_25
Description: NF21648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21648_high_25 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 22 - 291
Target Start/End: Complemental strand, 231097 - 230828
Alignment:
| Q |
22 |
cagtcatgcgaccatggactccttgaaacaagcgttttagagtcgccacagtatcagcaaacttagcatctctctcgttttcatatctatcagattttaa |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
231097 |
cagtcatgcgaccatggactccttgaaacaagcgttttagagtcgccacagtatcagcaaacttagcatctctctcgttttcatatctatcagattttaa |
230998 |
T |
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| Q |
122 |
ttcgtgtagttcatttactaaatcaccaannnnnnncttcaagttatgatattctcgcttgaaatcactttgcttttcctgcaacagacacagctctctc |
221 |
Q |
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|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
230997 |
ttcgtgtagttcatttactacatcaccaatttttttcttcaagttatgatattctcgcttgaaatcactttgcttttcctgcaacagacacagctctctc |
230898 |
T |
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| Q |
222 |
ttcgtgttttccaggtcatccttattctttgcaaaattatcaagcctttctcgcatctgtttttcctttg |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
230897 |
ttcgtgttttccaggtcatccttattctttgcaaaattatcaagcctttctcgcatctgtttttcctttg |
230828 |
T |
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Target: chr1 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 22 - 114
Target Start/End: Complemental strand, 25834423 - 25834331
Alignment:
| Q |
22 |
cagtcatgcgaccatggactccttgaaacaagcgttttagagtcgccacagtatcagcaaacttagcatctctctcgttttcatatctatcag |
114 |
Q |
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|||||||||||||||||||||| |||||||||||||| ||||| ||||||| | || || ||||||||||||||||||||||||||||||| |
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| T |
25834423 |
cagtcatgcgaccatggactccctgaaacaagcgtttcagagttgccacagcctgagacaatttagcatctctctcgttttcatatctatcag |
25834331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 106
Target Start/End: Complemental strand, 30585241 - 30585157
Alignment:
| Q |
22 |
cagtcatgcgaccatggactccttgaaacaagcgttttagagtcgccacagtatcagcaaacttagcatctctctcgttttcata |
106 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| ||||||| | || || ||||||||||||||||||||||| |
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| T |
30585241 |
cagtcatgcgaccatggactccttgaaacaagcgtttcagagttgccacagcctgagacaatttagcatctctctcgttttcata |
30585157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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