View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21648_high_40 (Length: 236)
Name: NF21648_high_40
Description: NF21648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21648_high_40 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 42625088 - 42624867
Alignment:
| Q |
1 |
aacacatgctaacccattacatgctacgaactctgaagagggtcggtccattaattttgatttgcaggcgaggcttaaagcaaaatttaatatatgagac |
100 |
Q |
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| T |
42625088 |
aacacatgctaacccattacatgctacgaactctgaagagggtcggcccattaattttgatttgcaggcgaggcttaaagcaaaatttaatatatgagac |
42624989 |
T |
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| Q |
101 |
atttttagtctgcatatgttggctttttgtttataaaatctaatgaaatattgttttctattgggaggtccaaagccatgacttcgtcaccatgaaaaac |
200 |
Q |
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| T |
42624988 |
atttttagtctgcatatgatggctttttgtttataaaatctaatgaaatattgttttctattgggaggtccaaagccatgacttcgtcaccatgaaaaac |
42624889 |
T |
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| Q |
201 |
tacatttcaacacgttatcatt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
42624888 |
tacatttcaacacgttatcatt |
42624867 |
T |
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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 85 - 148
Target Start/End: Complemental strand, 24578173 - 24578110
Alignment:
| Q |
85 |
atttaatatatgagacatttttagtctgcatatgttggctttttgtttataaaatctaatgaaa |
148 |
Q |
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| T |
24578173 |
atttaatatatgaggcatttttagtttgtatatgaagtctttttgtttataaaatctaatgaaa |
24578110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 148
Target Start/End: Original strand, 32598383 - 32598455
Alignment:
| Q |
76 |
taaagcaaaatttaatatatgagacatttttagtctgcatatgttggctttttgtttataaaatctaatgaaa |
148 |
Q |
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| T |
32598383 |
taaaacaaattttaatatatgaggcatttttagtctatatatgaagcctttttgtttataatatctaaggaaa |
32598455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 144
Target Start/End: Complemental strand, 42003929 - 42003839
Alignment:
| Q |
52 |
taattttgatttgcaggcgaggcttaaagcaaaatttaatatatgagacatttttagtctgcatatgttggctttttgtttataaaatctaat |
144 |
Q |
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||||||| ||||| |||||| || ||||| ||| |||||||||| || |||||||| ||||||||| || ||||| |||||||||| |||| |
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| T |
42003929 |
taatttttatttgtaggcgatgcctaaagtaaattttaatatat--gatctttttagtttgcatatgtgggatttttatttataaaatataat |
42003839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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