View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21648_high_43 (Length: 203)

Name: NF21648_high_43
Description: NF21648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21648_high_43
NF21648_high_43
[»] chr2 (12 HSPs)
chr2 (14-188)||(14546798-14546972)
chr2 (14-186)||(15004364-15004536)
chr2 (14-186)||(14519809-14519987)
chr2 (16-98)||(14528409-14528491)
chr2 (16-98)||(14542635-14542717)
chr2 (102-186)||(15007585-15007669)
chr2 (99-186)||(14533744-14533831)
chr2 (20-98)||(14511951-14512029)
chr2 (55-98)||(15007520-15007563)
chr2 (14-54)||(14533650-14533690)
chr2 (99-173)||(14528510-14528584)
chr2 (99-173)||(14542736-14542810)
[»] chr4 (1 HSPs)
chr4 (40-98)||(17357339-17357397)


Alignment Details
Target: chr2 (Bit Score: 171; Significance: 5e-92; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 14 - 188
Target Start/End: Original strand, 14546798 - 14546972
Alignment:
Q  14 atcaacaaccccaaaattcaataactctcttttgcaccaatacttctcgttcccaatttcactcacaagattctgcaccacaacaacacacccattcgct 113  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14546798 atcaacaaccccaaaattcaataactctcttctgcaccaatacttctcgttcccaatttcactcacaagattctgcaccacaacaacacacccattcgct 14546897  T
Q  114 gtatcataccttatcaacaatttcggtttctcacctctatctgctctcaaggctttcaacaacaatcaggttctt 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14546898 gtatcataccttatcaacaatttcggtttctcacctctatctgctctcaaggctttcaacaacaatcaggttctt 14546972  T

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Target: chr2; HSP #2
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 14 - 186
Target Start/End: Complemental strand, 15004536 - 15004364
Alignment:
Q  14 atcaacaaccccaaaattcaataactctcttttgcaccaatacttctcgttcccaatttcactcacaagattctgcaccacaacaacacacccattcgct 113  Q
    ||||||||||||||||||||| ||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15004536 atcaacaaccccaaaattcaacaaccctcttctgcatcaatacttctcgttcccaatttcactcacaagattctgcaccacaacaacacacccattcgct 15004437  T
Q  114 gtatcataccttatcaacaatttcggtttctcacctctatctgctctcaaggctttcaacaacaatcaggttc 186  Q
    |||||||||||| |||||||||| ||||||||| ||  |||  ||||||| |||||||||||||| |||||||    
T  15004436 gtatcataccttgtcaacaattttggtttctcaactgaatcaactctcaaagctttcaacaacaagcaggttc 15004364  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 186
Target Start/End: Original strand, 14519809 - 14519987
Alignment:
Q  14 atcaacaaccccaaaattcaataactctcttttgcaccaatacttctcgttcccaatttcactcacaagattctgcaccac---aaca---acacaccca 107  Q
    ||||||||||||||||||||| ||| |||||||  ||||| |||| | ||||||||||||||||| ||| ||||||||  |   | ||   ||||| |||    
T  14519809 atcaacaaccccaaaattcaacaaccctcttttcaaccaacacttgttgttcccaatttcactcagaagcttctgcacatcggaatcagacacacaacca 14519908  T
Q  108 ttcgctgtatcataccttatcaacaatttcggtttctcacctctatctgctctcaaggctttcaacaacaatcaggttc 186  Q
    || ||||||||||||||  ||||||| || |||||||||| |  ||| |||||||| |||||||||||||  |||||||    
T  14519909 tttgctgtatcatacctcgtcaacaaatttggtttctcacatgaatcggctctcaaagctttcaacaacagacaggttc 14519987  T

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Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 14528409 - 14528491
Alignment:
Q  16 caacaaccccaaaattcaataactctcttttgcaccaatacttctcgttcccaatttcactcacaagattctgcaccacaaca 98  Q
    |||||||| |||||||||| ||| |||||||  ||||| ||||||| |||||| |||||||||||||||||||||||||||||    
T  14528409 caacaacctcaaaattcaacaaccctcttttcaaccaacacttctcattcccattttcactcacaagattctgcaccacaaca 14528491  T

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Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 14542635 - 14542717
Alignment:
Q  16 caacaaccccaaaattcaataactctcttttgcaccaatacttctcgttcccaatttcactcacaagattctgcaccacaaca 98  Q
    |||||||| |||||||||| ||| |||||||  ||||| ||||||| |||| |||||||||||||||||||||||||||||||    
T  14542635 caacaacctcaaaattcaacaaccctcttttcaaccaacacttctcattccaaatttcactcacaagattctgcaccacaaca 14542717  T

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Target: chr2; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 102 - 186
Target Start/End: Original strand, 15007585 - 15007669
Alignment:
Q  102 cacccattcgctgtatcataccttatcaacaatttcggtttctcacctctatctgctctcaaggctttcaacaacaatcaggttc 186  Q
    ||||||||||||| ||| ||||| ||| ||||||| ||||||||||||| ||||||||| || |||||||||||||| |||||||    
T  15007585 cacccattcgctgcatcctacctcatcgacaattttggtttctcacctcaatctgctcttaaagctttcaacaacaaacaggttc 15007669  T

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Target: chr2; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 99 - 186
Target Start/End: Original strand, 14533744 - 14533831
Alignment:
Q  99 acacacccattcgctgtatcataccttatcaacaatttcggtttctcacctctatctgctctcaaggctttcaacaacaatcaggttc 186  Q
    ||||| |||||| ||||||||||||| ||||||||||| || ||||||| |  |||||||||||| |||||||||||||| |||||||    
T  14533744 acacatccattctctgtatcatacctcatcaacaattttggattctcacatgaatctgctctcaaagctttcaacaacaagcaggttc 14533831  T

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Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 14511951 - 14512029
Alignment:
Q  20 aaccccaaaattcaataactctcttttgcaccaatacttctcgttcccaatttcactcacaagattctgcaccacaaca 98  Q
    |||| |||||| ||| ||| ||||||| |||||| |||| || |||||| |||||||||||||||||| ||||||||||    
T  14511951 aaccgcaaaatccaacaaccctctttttcaccaacacttttccttcccattttcactcacaagattctccaccacaaca 14512029  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 98
Target Start/End: Original strand, 15007520 - 15007563
Alignment:
Q  55 acttctcgttcccaatttcactcacaagattctgcaccacaaca 98  Q
    ||||||| |||||||||||||||||||||||| |||||||||||    
T  15007520 acttctcattcccaatttcactcacaagattcagcaccacaaca 15007563  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 14533650 - 14533690
Alignment:
Q  14 atcaacaaccccaaaattcaataactctcttttgcaccaat 54  Q
    ||||||||||||||||||||| ||| |||||||||||||||    
T  14533650 atcaacaaccccaaaattcaacaaccctcttttgcaccaat 14533690  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 173
Target Start/End: Original strand, 14528510 - 14528584
Alignment:
Q  99 acacacccattcgctgtatcataccttatcaacaatttcggtttctcacctctatctgctctcaaggctttcaac 173  Q
    ||||| |||||||||| ||| || || ||||||||||| || ||||||| |  |||||||||||| |||||||||    
T  14528510 acacatccattcgctgcatcttatctcatcaacaattttgggttctcacatgaatctgctctcaaagctttcaac 14528584  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 173
Target Start/End: Original strand, 14542736 - 14542810
Alignment:
Q  99 acacacccattcgctgtatcataccttatcaacaatttcggtttctcacctctatctgctctcaaggctttcaac 173  Q
    ||||| |||||||||| ||| || || ||||||||||| || ||||||| |  |||||||||||| |||||||||    
T  14542736 acacatccattcgctgcatcttatctcatcaacaattttgggttctcacatgaatctgctctcaaagctttcaac 14542810  T

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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 17357397 - 17357339
Alignment:
Q  40 ctcttttgcaccaatacttctcgttcccaatttcactcacaagattctgcaccacaaca 98  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  17357397 ctcttctgcaccaatacttctcgttcccaatttcactcacaagattctccaccacaaca 17357339  T

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