View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21648_low_11 (Length: 440)

Name: NF21648_low_11
Description: NF21648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21648_low_11
NF21648_low_11
[»] chr1 (18 HSPs)
chr1 (291-425)||(46135986-46136120)
chr1 (330-425)||(46132796-46132891)
chr1 (14-57)||(46136357-46136400)
chr1 (291-330)||(44826076-44826115)
chr1 (291-324)||(10028000-10028033)
chr1 (291-324)||(18458825-18458858)
chr1 (291-324)||(24987609-24987642)
chr1 (291-324)||(25235775-25235808)
chr1 (291-324)||(26095815-26095848)
chr1 (291-324)||(26097050-26097083)
chr1 (291-324)||(28797384-28797417)
chr1 (291-324)||(32131926-32131959)
chr1 (291-324)||(47022092-47022125)
chr1 (291-323)||(1825296-1825328)
chr1 (292-324)||(2472608-2472640)
chr1 (292-324)||(9439426-9439458)
chr1 (291-323)||(21853418-21853450)
chr1 (295-331)||(51470123-51470159)
[»] chr7 (16 HSPs)
chr7 (291-331)||(3307699-3307739)
chr7 (291-331)||(13279440-13279480)
chr7 (291-331)||(38193217-38193257)
chr7 (291-329)||(39580189-39580227)
chr7 (291-324)||(1594147-1594180)
chr7 (291-324)||(5766639-5766672)
chr7 (291-324)||(6269529-6269562)
chr7 (291-324)||(13797634-13797667)
chr7 (291-324)||(19272472-19272505)
chr7 (291-324)||(23371450-23371483)
chr7 (291-324)||(23784585-23784618)
chr7 (291-331)||(5909707-5909747)
chr7 (292-324)||(9915652-9915684)
chr7 (292-324)||(9923564-9923596)
chr7 (198-230)||(34857680-34857712)
chr7 (198-230)||(44414007-44414039)
[»] chr8 (13 HSPs)
chr8 (291-324)||(3912503-3912536)
chr8 (291-331)||(27543648-27543688)
chr8 (291-324)||(960520-960553)
chr8 (294-331)||(2696448-2696485)
chr8 (291-324)||(9513829-9513862)
chr8 (291-324)||(14329623-14329656)
chr8 (291-324)||(25277729-25277762)
chr8 (291-324)||(29309566-29309599)
chr8 (291-324)||(34985345-34985378)
chr8 (292-324)||(12330334-12330366)
chr8 (198-230)||(12330493-12330525)
chr8 (293-325)||(27164683-27164715)
chr8 (291-323)||(40652621-40652653)
[»] chr3 (10 HSPs)
chr3 (291-324)||(27760290-27760323)
chr3 (291-331)||(47115585-47115625)
chr3 (293-331)||(10615269-10615307)
chr3 (291-324)||(6510216-6510249)
chr3 (291-324)||(49872972-49873005)
chr3 (291-324)||(49880760-49880793)
chr3 (291-324)||(51460786-51460819)
chr3 (291-324)||(54567766-54567799)
chr3 (291-323)||(22949248-22949280)
chr3 (198-230)||(25109929-25109961)
[»] chr4 (13 HSPs)
chr4 (291-330)||(3525891-3525930)
chr4 (291-329)||(17289999-17290037)
chr4 (291-324)||(550674-550707)
chr4 (291-324)||(11563540-11563573)
chr4 (291-324)||(20125441-20125474)
chr4 (291-324)||(21780123-21780156)
chr4 (291-324)||(24215764-24215797)
chr4 (291-324)||(37273418-37273451)
chr4 (291-324)||(50138489-50138522)
chr4 (295-324)||(54555378-54555407)
chr4 (291-331)||(4103090-4103130)
chr4 (291-323)||(27579516-27579548)
chr4 (291-331)||(27579767-27579807)
[»] chr2 (17 HSPs)
chr2 (291-330)||(29835097-29835136)
chr2 (291-325)||(38385935-38385969)
chr2 (291-324)||(17328093-17328126)
chr2 (291-324)||(19493471-19493504)
chr2 (291-324)||(19641447-19641480)
chr2 (291-324)||(19840040-19840073)
chr2 (291-324)||(22116156-22116189)
chr2 (295-324)||(27866195-27866224)
chr2 (291-324)||(28461069-28461102)
chr2 (291-324)||(34635707-34635740)
chr2 (291-324)||(37147552-37147585)
chr2 (292-324)||(16577371-16577403)
chr2 (293-325)||(16670499-16670531)
chr2 (291-323)||(30371619-30371651)
chr2 (295-331)||(34428631-34428667)
chr2 (292-324)||(38210865-38210897)
chr2 (291-323)||(43301882-43301914)
[»] scaffold0809 (1 HSPs)
scaffold0809 (294-332)||(4023-4061)
[»] scaffold0769 (1 HSPs)
scaffold0769 (291-324)||(4174-4207)
[»] scaffold0384 (1 HSPs)
scaffold0384 (291-324)||(4450-4483)
[»] scaffold0142 (1 HSPs)
scaffold0142 (291-324)||(34849-34882)
[»] scaffold0098 (1 HSPs)
scaffold0098 (295-324)||(42969-42998)
[»] scaffold0032 (1 HSPs)
scaffold0032 (291-324)||(91051-91084)
[»] scaffold0031 (1 HSPs)
scaffold0031 (291-324)||(1828-1861)
[»] scaffold0010 (1 HSPs)
scaffold0010 (291-324)||(26309-26342)
[»] chr6 (8 HSPs)
chr6 (291-324)||(3063506-3063539)
chr6 (291-324)||(10344051-10344084)
chr6 (291-324)||(13114399-13114432)
chr6 (291-324)||(14328669-14328702)
chr6 (291-324)||(14421679-14421712)
chr6 (295-324)||(16129495-16129524)
chr6 (292-329)||(24387785-24387822)
chr6 (291-324)||(29942466-29942499)
[»] chr5 (5 HSPs)
chr5 (291-324)||(10976770-10976803)
chr5 (291-324)||(22551523-22551556)
chr5 (291-324)||(29104445-29104478)
chr5 (291-324)||(38482319-38482352)
chr5 (292-324)||(12399610-12399642)
[»] scaffold0045 (1 HSPs)
scaffold0045 (291-331)||(26062-26102)


Alignment Details
Target: chr1 (Bit Score: 123; Significance: 5e-63; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 291 - 425
Target Start/End: Complemental strand, 46136120 - 46135986
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacctaaaaaactaactaacctataaaccataacttgtatttcggacttaacaagtctccccagtatatg 390  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  46136120 gacctatattacagggggtaaagacttattaacccaaaaaactaactaacctataaaccataacttgtattttggacttaacaagtctccccagtatatg 46136021  T
Q  391 tatagtcggatactcaagattcttccagttgtaga 425  Q
    |||||||||||||||||||||||||| ||||||||    
T  46136020 tatagtcggatactcaagattcttccggttgtaga 46135986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 330 - 425
Target Start/End: Complemental strand, 46132891 - 46132796
Alignment:
Q  330 aactaactaacctataaaccataacttgtatttcggacttaacaagtctccccagtatatgtatagtcggatactcaagattcttccagttgtaga 425  Q
    |||||||||||||||| ||||||||| ||||  ||||| |||||||||||||||||| |  ||||||||||| |||||||||||||||||||||||    
T  46132891 aactaactaacctatacaccataactcgtatcccggacctaacaagtctccccagtagagatatagtcggatcctcaagattcttccagttgtaga 46132796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 46136400 - 46136357
Alignment:
Q  14 atgaatgtaatgacgatgtaattaattatgaaattggaggaatt 57  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  46136400 atgaatgtaatgacaatgtaattaattatgaaattggaggaatt 46136357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 330
Target Start/End: Complemental strand, 44826115 - 44826076
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacctaaaaa 330  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  44826115 gacctctattacagggggtaaagacttattaacccaaaaa 44826076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Original strand, 10028000 - 10028033
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  10028000 gacctatattacagggggtaaagacctattaacc 10028033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Original strand, 18458825 - 18458858
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  18458825 gacctatattacagggggtaaagacctattaacc 18458858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Complemental strand, 24987642 - 24987609
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  24987642 gacctatattacagggggtaaagacctattaacc 24987609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Complemental strand, 25235808 - 25235775
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  25235808 gacctatattacagggggtaaagacctattaacc 25235775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Complemental strand, 26095848 - 26095815
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  26095848 gacctatattacagggggtaaagacctattaacc 26095815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Original strand, 26097050 - 26097083
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  26097050 gacctatattacagggggtaaagacctattaacc 26097083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Original strand, 28797384 - 28797417
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    |||||||||||||||||||||||| |||||||||    
T  28797384 gacctatattacagggggtaaagatttattaacc 28797417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Original strand, 32131926 - 32131959
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  32131926 gacctatattacagggggtaaagacctattaacc 32131959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Original strand, 47022092 - 47022125
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  47022092 gacctatattacagggggtaaagacctattaacc 47022125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 323
Target Start/End: Complemental strand, 1825328 - 1825296
Alignment:
Q  291 gacctatattacagggggtaaagacttattaac 323  Q
    ||||||||||||||||||||||||| |||||||    
T  1825328 gacctatattacagggggtaaagacctattaac 1825296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 324
Target Start/End: Original strand, 2472608 - 2472640
Alignment:
Q  292 acctatattacagggggtaaagacttattaacc 324  Q
    |||||||||||||||||||||||| ||||||||    
T  2472608 acctatattacagggggtaaagacctattaacc 2472640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 324
Target Start/End: Original strand, 9439426 - 9439458
Alignment:
Q  292 acctatattacagggggtaaagacttattaacc 324  Q
    |||||||||||||||||||||||| ||||||||    
T  9439426 acctatattacagggggtaaagacctattaacc 9439458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 323
Target Start/End: Complemental strand, 21853450 - 21853418
Alignment:
Q  291 gacctatattacagggggtaaagacttattaac 323  Q
    ||||||||||||||||||||||||| |||||||    
T  21853450 gacctatattacagggggtaaagacctattaac 21853418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 331
Target Start/End: Complemental strand, 51470159 - 51470123
Alignment:
Q  295 tatattacagggggtaaagacttattaacctaaaaaa 331  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  51470159 tatattacagggggtaaagacctattaacccaaaaaa 51470123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 331
Target Start/End: Original strand, 3307699 - 3307739
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacctaaaaaa 331  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  3307699 gacctatattacagggggtaaagacttattaacccaaaaaa 3307739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 331
Target Start/End: Original strand, 13279440 - 13279480
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacctaaaaaa 331  Q
    ||||||||||||||||||||||||| |||||||| ||||||    
T  13279440 gacctatattacagggggtaaagacctattaacccaaaaaa 13279480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 331
Target Start/End: Original strand, 38193217 - 38193257
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacctaaaaaa 331  Q
    ||||||||||||||||||||||||| |||||||| ||||||    
T  38193217 gacctatattacagggggtaaagacctattaacccaaaaaa 38193257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 329
Target Start/End: Original strand, 39580189 - 39580227
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacctaaaa 329  Q
    ||||||||||||||||||||||||| |||||||| ||||    
T  39580189 gacctatattacagggggtaaagacctattaacccaaaa 39580227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Original strand, 1594147 - 1594180
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  1594147 gacctatattacagggggtaaagacctattaacc 1594180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Complemental strand, 5766672 - 5766639
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  5766672 gacctatattacagggggtaaagacatattaacc 5766639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Complemental strand, 6269562 - 6269529
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  6269562 gacctatattacagggggtaaagacctattaacc 6269529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Original strand, 13797634 - 13797667
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  13797634 gacctatattacagggggtaaagacctattaacc 13797667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Original strand, 19272472 - 19272505
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  19272472 gacctatattacagggggtaaagacctattaacc 19272505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Complemental strand, 23371483 - 23371450
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  23371483 gacctatattacagggggtaaagacctattaacc 23371450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Complemental strand, 23784618 - 23784585
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  23784618 gacctatattacagggggtaaagacctattaacc 23784585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 331
Target Start/End: Complemental strand, 5909747 - 5909707
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacctaaaaaa 331  Q
    ||||||||||||| ||||||||||| |||||||| ||||||    
T  5909747 gacctatattacatggggtaaagacctattaacccaaaaaa 5909707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 324
Target Start/End: Complemental strand, 9915684 - 9915652
Alignment:
Q  292 acctatattacagggggtaaagacttattaacc 324  Q
    |||||||||||||||||||||||| ||||||||    
T  9915684 acctatattacagggggtaaagacctattaacc 9915652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 324
Target Start/End: Complemental strand, 9923596 - 9923564
Alignment:
Q  292 acctatattacagggggtaaagacttattaacc 324  Q
    |||||||||||||||||||||||| ||||||||    
T  9923596 acctatattacagggggtaaagacctattaacc 9923564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 230
Target Start/End: Complemental strand, 34857712 - 34857680
Alignment:
Q  198 tggtttttgtttggcctactaggggtaaatcaa 230  Q
    |||||||||||||||||| ||||||||||||||    
T  34857712 tggtttttgtttggcctattaggggtaaatcaa 34857680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 230
Target Start/End: Original strand, 44414007 - 44414039
Alignment:
Q  198 tggtttttgtttggcctactaggggtaaatcaa 230  Q
    |||||||||||||||||| ||||||||||||||    
T  44414007 tggtttttgtttggcctattaggggtaaatcaa 44414039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 324
Target Start/End: Original strand, 3912503 - 3912536
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||||||||||||    
T  3912503 gacctatattacagggggtaaagacttattaacc 3912536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 331
Target Start/End: Original strand, 27543648 - 27543688
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacctaaaaaa 331  Q
    ||||||||||||||||||||||||| |||||||| ||||||    
T  27543648 gacctatattacagggggtaaagacctattaacccaaaaaa 27543688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Original strand, 960520 - 960553
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  960520 gacctatattacagggggtaaagacctattaacc 960553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 331
Target Start/End: Complemental strand, 2696485 - 2696448
Alignment:
Q  294 ctatattacagggggtaaagacttattaacctaaaaaa 331  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  2696485 ctatattacaaggggtaaagacctattaacctaaaaaa 2696448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Complemental strand, 9513862 - 9513829
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  9513862 gacctatattacagggggtaaagacatattaacc 9513829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Original strand, 14329623 - 14329656
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  14329623 gacctatattacagggggtaaagacctattaacc 14329656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Original strand, 25277729 - 25277762
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  25277729 gacctatattacagggggtaaagacctattaacc 25277762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Complemental strand, 29309599 - 29309566
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  29309599 gacctatattacagggggtaaagacctattaacc 29309566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Original strand, 34985345 - 34985378
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  34985345 gacctatattacagggggtaaagacctattaacc 34985378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 324
Target Start/End: Complemental strand, 12330366 - 12330334
Alignment:
Q  292 acctatattacagggggtaaagacttattaacc 324  Q
    |||||||||||||||||||||||| ||||||||    
T  12330366 acctatattacagggggtaaagacctattaacc 12330334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 230
Target Start/End: Original strand, 12330493 - 12330525
Alignment:
Q  198 tggtttttgtttggcctactaggggtaaatcaa 230  Q
    |||||||||||||||||| ||||||||||||||    
T  12330493 tggtttttgtttggcctattaggggtaaatcaa 12330525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 293 - 325
Target Start/End: Original strand, 27164683 - 27164715
Alignment:
Q  293 cctatattacagggggtaaagacttattaacct 325  Q
    ||||||||||||||||||||||| |||||||||    
T  27164683 cctatattacagggggtaaagacctattaacct 27164715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 323
Target Start/End: Complemental strand, 40652653 - 40652621
Alignment:
Q  291 gacctatattacagggggtaaagacttattaac 323  Q
    ||||||||||||||||||||||||| |||||||    
T  40652653 gacctatattacagggggtaaagacctattaac 40652621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 324
Target Start/End: Complemental strand, 27760323 - 27760290
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||||||||||||    
T  27760323 gacctatattacagggggtaaagacttattaacc 27760290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 331
Target Start/End: Original strand, 47115585 - 47115625
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacctaaaaaa 331  Q
    ||||||||||||||||||||||||| |||||||| ||||||    
T  47115585 gacctatattacagggggtaaagacctattaacccaaaaaa 47115625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 331
Target Start/End: Complemental strand, 10615307 - 10615269
Alignment:
Q  293 cctatattacagggggtaaagacttattaacctaaaaaa 331  Q
    ||||||||||||||||||||||| |||||||| ||||||    
T  10615307 cctatattacagggggtaaagacctattaaccaaaaaaa 10615269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Complemental strand, 6510249 - 6510216
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  6510249 gacctatattacagggggtaaagacctattaacc 6510216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Original strand, 49872972 - 49873005
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  49872972 gacctatattacagggggtaaagacctattaacc 49873005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Original strand, 49880760 - 49880793
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  49880760 gacctatattacagggggtaaagacctattaacc 49880793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Original strand, 51460786 - 51460819
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  51460786 gacctatattacagggggtaaagacctattaacc 51460819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Original strand, 54567766 - 54567799
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  54567766 gacctatattacagggggtaaagacctattaacc 54567799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 323
Target Start/End: Complemental strand, 22949280 - 22949248
Alignment:
Q  291 gacctatattacagggggtaaagacttattaac 323  Q
    ||||||||||||||||||||||||| |||||||    
T  22949280 gacctatattacagggggtaaagacctattaac 22949248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 230
Target Start/End: Complemental strand, 25109961 - 25109929
Alignment:
Q  198 tggtttttgtttggcctactaggggtaaatcaa 230  Q
    |||||||||||||||||| ||||||||||||||    
T  25109961 tggtttttgtttggcctattaggggtaaatcaa 25109929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 330
Target Start/End: Original strand, 3525891 - 3525930
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacctaaaaa 330  Q
    |||||||||||||| ||||||||||||||||||| |||||    
T  3525891 gacctatattacagagggtaaagacttattaacccaaaaa 3525930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 329
Target Start/End: Original strand, 17289999 - 17290037
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacctaaaa 329  Q
    ||||||||||| ||||||||||||| |||||||||||||    
T  17289999 gacctatattatagggggtaaagacctattaacctaaaa 17290037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Complemental strand, 550707 - 550674
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  550707 gacctatattacagggggtaaagacctattaacc 550674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Original strand, 11563540 - 11563573
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  11563540 gacctatattacagggggtaaagacctattaacc 11563573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Original strand, 20125441 - 20125474
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  20125441 gacctatattacagggggtaaagacctattaacc 20125474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Complemental strand, 21780156 - 21780123
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  21780156 gacctatattacagggggtaaagacctattaacc 21780123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Original strand, 24215764 - 24215797
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  24215764 gacctatattacagggggtaaagacctattaacc 24215797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Original strand, 37273418 - 37273451
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  37273418 gacctatattacagggggtaaagacctattaacc 37273451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Complemental strand, 50138522 - 50138489
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  50138522 gacctatattacagggggtaaagacctattaacc 50138489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 324
Target Start/End: Original strand, 54555378 - 54555407
Alignment:
Q  295 tatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||||||||    
T  54555378 tatattacagggggtaaagacttattaacc 54555407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 331
Target Start/End: Original strand, 4103090 - 4103130
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacctaaaaaa 331  Q
    |||||||||||||||||||||||  |||||||||| |||||    
T  4103090 gacctatattacagggggtaaagcattattaaccttaaaaa 4103130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 323
Target Start/End: Complemental strand, 27579548 - 27579516
Alignment:
Q  291 gacctatattacagggggtaaagacttattaac 323  Q
    ||||||||||||||||||||||||| |||||||    
T  27579548 gacctatattacagggggtaaagacctattaac 27579516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 331
Target Start/End: Original strand, 27579767 - 27579807
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacctaaaaaa 331  Q
    |||||||||||||| |||||||||| |||||||| ||||||    
T  27579767 gacctatattacagagggtaaagacatattaaccaaaaaaa 27579807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 330
Target Start/End: Complemental strand, 29835136 - 29835097
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacctaaaaa 330  Q
    ||||||||||||||||||||||||| |||||||| |||||    
T  29835136 gacctatattacagggggtaaagacctattaacccaaaaa 29835097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 325
Target Start/End: Complemental strand, 38385969 - 38385935
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacct 325  Q
    ||||||||||||||||||||||||| |||||||||    
T  38385969 gacctatattacagggggtaaagacctattaacct 38385935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Complemental strand, 17328126 - 17328093
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  17328126 gacctatattacagggggtaaagacctattaacc 17328093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Original strand, 19493471 - 19493504
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  19493471 gacctatattacagggggtaaagacctattaacc 19493504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Complemental strand, 19641480 - 19641447
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  19641480 gacctatattacagggggtaaagacctattaacc 19641447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Complemental strand, 19840073 - 19840040
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  19840073 gacctatattacagggggtaaagacctattaacc 19840040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Complemental strand, 22116189 - 22116156
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  22116189 gacctatattacagggggtaaagacctattaacc 22116156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 324
Target Start/End: Complemental strand, 27866224 - 27866195
Alignment:
Q  295 tatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||||||||    
T  27866224 tatattacagggggtaaagacttattaacc 27866195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Complemental strand, 28461102 - 28461069
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||| ||||||||||    
T  28461102 gacctatattacagggggtaaaggcttattaacc 28461069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Complemental strand, 34635740 - 34635707
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  34635740 gacctatattacagggggtaaagacctattaacc 34635707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Complemental strand, 37147585 - 37147552
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  37147585 gacctatattacagggggtaaagacctattaacc 37147552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 324
Target Start/End: Original strand, 16577371 - 16577403
Alignment:
Q  292 acctatattacagggggtaaagacttattaacc 324  Q
    |||||||||||||||||||||||| ||||||||    
T  16577371 acctatattacagggggtaaagacctattaacc 16577403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 293 - 325
Target Start/End: Complemental strand, 16670531 - 16670499
Alignment:
Q  293 cctatattacagggggtaaagacttattaacct 325  Q
    ||||||||||||||||||||||| |||||||||    
T  16670531 cctatattacagggggtaaagacctattaacct 16670499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 323
Target Start/End: Original strand, 30371619 - 30371651
Alignment:
Q  291 gacctatattacagggggtaaagacttattaac 323  Q
    ||||||||||||||||||||||||| |||||||    
T  30371619 gacctatattacagggggtaaagacctattaac 30371651  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 331
Target Start/End: Complemental strand, 34428667 - 34428631
Alignment:
Q  295 tatattacagggggtaaagacttattaacctaaaaaa 331  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  34428667 tatattacagggggtaaagacctattaaccttaaaaa 34428631  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 324
Target Start/End: Complemental strand, 38210897 - 38210865
Alignment:
Q  292 acctatattacagggggtaaagacttattaacc 324  Q
    |||||||||||||||||||||||| ||||||||    
T  38210897 acctatattacagggggtaaagacctattaacc 38210865  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 323
Target Start/End: Complemental strand, 43301914 - 43301882
Alignment:
Q  291 gacctatattacagggggtaaagacttattaac 323  Q
    ||||||||||||||||||||||||| |||||||    
T  43301914 gacctatattacagggggtaaagacctattaac 43301882  T

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Target: scaffold0809 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0809
Description:

Target: scaffold0809; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 332
Target Start/End: Original strand, 4023 - 4061
Alignment:
Q  294 ctatattacagggggtaaagacttattaacctaaaaaac 332  Q
    |||||||||||||||||||||| ||||||||||| ||||    
T  4023 ctatattacagggggtaaagacctattaacctaagaaac 4061  T

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Target: scaffold0769 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0769
Description:

Target: scaffold0769; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Original strand, 4174 - 4207
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  4174 gacctatattacagggggtaaagacctattaacc 4207  T

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Target: scaffold0384 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Original strand, 4450 - 4483
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  4450 gacctatattacagggggtaaagacctattaacc 4483  T

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Target: scaffold0142 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Original strand, 34849 - 34882
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  34849 gacctatattacagggggtaaagacctattaacc 34882  T

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Target: scaffold0098 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 324
Target Start/End: Original strand, 42969 - 42998
Alignment:
Q  295 tatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||||||||    
T  42969 tatattacagggggtaaagacttattaacc 42998  T

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Target: scaffold0032 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Complemental strand, 91084 - 91051
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  91084 gacctatattacagggggtaaagacctattaacc 91051  T

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Target: scaffold0031 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Complemental strand, 1861 - 1828
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  1861 gacctatattacagggggtaaagacctattaacc 1828  T

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Target: scaffold0010 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Complemental strand, 26342 - 26309
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  26342 gacctatattacagggggtaaagacctattaacc 26309  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Original strand, 3063506 - 3063539
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  3063506 gacctatattacagggggtaaagacctattaacc 3063539  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Complemental strand, 10344084 - 10344051
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  10344084 gacctatattacagggggtaaagacctattaacc 10344051  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Complemental strand, 13114432 - 13114399
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  13114432 gacctatattacagggggtaaagacctattaacc 13114399  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Original strand, 14328669 - 14328702
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  14328669 gacctatattacagggggtaaagacctattaacc 14328702  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Original strand, 14421679 - 14421712
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  14421679 gacctatattacagggggtaaagacctattaacc 14421712  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 324
Target Start/End: Complemental strand, 16129524 - 16129495
Alignment:
Q  295 tatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||||||||    
T  16129524 tatattacagggggtaaagacttattaacc 16129495  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 329
Target Start/End: Original strand, 24387785 - 24387822
Alignment:
Q  292 acctatattacagggggtaaagacttattaacctaaaa 329  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  24387785 acctatattacagggggtaaagacctattaacccaaaa 24387822  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Original strand, 29942466 - 29942499
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  29942466 gacctatattacagggggtaaagacctattaacc 29942499  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Original strand, 10976770 - 10976803
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  10976770 gacctatattacagggggtaaagacctattaacc 10976803  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Complemental strand, 22551556 - 22551523
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  22551556 gacctatattacagggggtaaagacctattaacc 22551523  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Complemental strand, 29104478 - 29104445
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  29104478 gacctatattacagggggtaaagacctattaacc 29104445  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Complemental strand, 38482352 - 38482319
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacc 324  Q
    ||||||||||||||||||||||||| ||||||||    
T  38482352 gacctatattacagggggtaaagacctattaacc 38482319  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 324
Target Start/End: Original strand, 12399610 - 12399642
Alignment:
Q  292 acctatattacagggggtaaagacttattaacc 324  Q
    |||||||||||||||||||||||| ||||||||    
T  12399610 acctatattacagggggtaaagacctattaacc 12399642  T

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Target: scaffold0045 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 331
Target Start/End: Complemental strand, 26102 - 26062
Alignment:
Q  291 gacctatattacagggggtaaagacttattaacctaaaaaa 331  Q
    |||||||||||||| || ||||||||||||||||| |||||    
T  26102 gacctatattacagaggataaagacttattaaccttaaaaa 26062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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