View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21648_low_12 (Length: 425)
Name: NF21648_low_12
Description: NF21648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21648_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 11 - 406
Target Start/End: Complemental strand, 336513 - 336118
Alignment:
| Q |
11 |
cagagaccatggacaagtcctcttcatcagagtcctcaatattttgagcctttttgtgtttagtttcttcataacaaccaagtgaaggtgtatgtgattg |
110 |
Q |
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| T |
336513 |
cagaaaccatggacaagtcctcttcatcagagtcctcaatattttgagcctttttgtgtttagtttcttcataacaaccaagtgaaggtgtatgtgattg |
336414 |
T |
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| Q |
111 |
tgaggtattgagagaacggtcaaggtatagagtccatccagactcacacccactgctgcattctgaagctaatgtatccatatgatcttgttttggagta |
210 |
Q |
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| T |
336413 |
tgaggtattgagagaacggtcaaggtatagagtccatccagactcacacccactgctgcattctgaagctaatgtatccatatgatcttgttttggagta |
336314 |
T |
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| Q |
211 |
actgggataggactctccaatttatgatgaaatgaaagagttacggtaaaaaagagttaactatat-aattaactaacttgtgtatatcaaactctcaca |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
336313 |
actgggataggactctccaatttatgatgaaatgaaagagttacggtaaaaaagagttaactatataaattaactaacttgtgtatatcaaactctcaca |
336214 |
T |
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| Q |
310 |
tgaccatatcctattatttattattataagaagtgtatgtggcaatgtgtcactcatctagtttagttttggtaaaaattgaaagaatagtggatag |
406 |
Q |
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| T |
336213 |
tgaccatatcctattatttattattataagaagtgtatgtggcaatgtgtcactcatctagtttagttttggt-aaaattgaaagaatagtggatag |
336118 |
T |
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