View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21648_low_13 (Length: 420)
Name: NF21648_low_13
Description: NF21648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21648_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 86 - 378
Target Start/End: Original strand, 19596963 - 19597255
Alignment:
| Q |
86 |
catgaactcccttaccacgtaagaaagatagaaaacacaagaggttgcggcaaaggctatgaagatttcaactggatcaatgatctgcatattatgttgt |
185 |
Q |
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| T |
19596963 |
catgaactcccttaccacgtaagaaagatagaaaacacaagaggttgcggcaaagactatgaagatttcaattggatcaatgatctgcatattatcttgt |
19597062 |
T |
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| Q |
186 |
tcattagattgtgatgctcttcgtaatggtgatgatggtggtgatactgttggtgatggtgttgatggtcgtcctagtgggtatcttctagggatcactg |
285 |
Q |
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| T |
19597063 |
tcattagattgcgatgctcttcgtaatggtgatgatggtggtgatactgttggtgatggtgttgatggtcgtcctgatgggtatcttctagggatcactg |
19597162 |
T |
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| Q |
286 |
aatgatatattggtggtgggttcactgaacgaggccatggaggacgaatgtgactcgatgaaaaattagaatggtatggtgatggtgatgatg |
378 |
Q |
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| T |
19597163 |
aatgatatattggtggtgggttcactgaacgaggccatggaggacgaatgtgactcgatgaaaaattagaatggtatggtaatggtgatgatg |
19597255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 208 - 254
Target Start/End: Original strand, 19597241 - 19597287
Alignment:
| Q |
208 |
gtaatggtgatgatggtggtgatactgttggtgatggtgttgatggt |
254 |
Q |
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| T |
19597241 |
gtaatggtgatgatggtggtgatactgttggtgatggtgttgatggt |
19597287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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