View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21648_low_14 (Length: 412)
Name: NF21648_low_14
Description: NF21648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21648_low_14 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 30898668 - 30898257
Alignment:
| Q |
1 |
actctggagcccaaaccaagctgcccttcacctccatagccccaaccccacacctgtcctatatctgaaaaattcagaaagctacaattaatgacatgtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30898668 |
actctggagcccaaaccaagctgcccttcacctccatagccccaaccccacacctgtcctatatctgaaaaattcagaaagctacaattaatgacatgtc |
30898569 |
T |
|
| Q |
101 |
taagactgcatgtctgatcttccatagcacaaaagtgatgcttcaatcaaaagatggtcacattacatgaaattttaagctcgggagaataaatagtcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30898568 |
taagactgcatgtctgatcttccatagcacaaaagtgatgcttcaatcaaaagatggtcacattacatgaaattttaagctcgggagaataaatagtcca |
30898469 |
T |
|
| Q |
201 |
tataaagtcaatacctgacaatactagggtatgacgcccaccggcagcaacacttgttatctttacccctggattcagtgtgacaagacatggcattgct |
300 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30898468 |
tataaattcaatacctgacaatactagggtatgacgcccaccagcagcaacacttgttatctttacccctggattcagtgtgacaagacatggcattgct |
30898369 |
T |
|
| Q |
301 |
gttagaatatcatcaccagatgacgaggtttgagccgcttgctttgctgaagatactttccttctcttactactttcttctccacttgaaacagttcctc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30898368 |
gttagaatatcatcaccagatgacgaggtttgagccgcttgctttgccgaagatactttccttctcttactactttcttctccacttgaaacagttcctc |
30898269 |
T |
|
| Q |
401 |
ctgtggattttg |
412 |
Q |
| |
|
|||||||||||| |
|
|
| T |
30898268 |
ctgtggattttg |
30898257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 23117699 - 23117638
Alignment:
| Q |
10 |
cccaaaccaagctgcccttcacctccatagccccaaccccacacctgtcctatatctgaaaa |
71 |
Q |
| |
|
|||||||| ||||| ||||| |||||||||||||||||||| |||||||| | ||||||||| |
|
|
| T |
23117699 |
cccaaacctagctgtccttcgcctccatagccccaaccccagacctgtcccacatctgaaaa |
23117638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University