View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21648_low_17 (Length: 399)
Name: NF21648_low_17
Description: NF21648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21648_low_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 19597253 - 19597628
Alignment:
| Q |
1 |
atggtggcgatactgtaggtgatggtgttaatggtggtggtggtggctgtgacggaaaagaataacaaggtggtcgtagtggccaatacggtaccatatc |
100 |
Q |
| |
|
||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19597253 |
atggtggtgatactgttggtgatggtgttgatggtggtggtggtggctgtgacggaaaagagtaacaaggtggtcgtagtggccaatacggtaccatatt |
19597352 |
T |
|
| Q |
101 |
ataatacagtgttcgaggtggctgtgatgaagaagatggtaccagcgacagatttgttggtagaatagaatgatatggtggtcgtggtggctgcggtgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19597353 |
ataatacagtgttcgaggtggctgtgatgaagaagatggtaccagcgacagatttgttggtagaatagaatgatatggtggtcgtggtggctgcggtgaa |
19597452 |
T |
|
| Q |
201 |
gatggtgtattggattgtgatggtagctccgttaaagattgcgttcttcttcgcaggaatgaaaatggccttggtggcagtgaagattgatgtggctgca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||| |||||||||| |
|
|
| T |
19597453 |
gatggtgtattggattgtgatggtagctccgttaaagattgcgttcttcttcgcaggaatgaaaacggccttcgtggcaatgaagattgctgtggctgca |
19597552 |
T |
|
| Q |
301 |
gtgaagatggtggtttctctgatgaagaaggtagtggtttctttgatgaagatggtggtgcattagaatcggatagttt |
379 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19597553 |
gtgaagatggtggtttctctgatgaaga---tagtgggttctttgatgaagatggtggtgcattagaatcggatagttt |
19597628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 329 - 379
Target Start/End: Original strand, 19597716 - 19597766
Alignment:
| Q |
329 |
aggtagtggtttctttgatgaagatggtggtgcattagaatcggatagttt |
379 |
Q |
| |
|
|||| |||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
19597716 |
aggtggtggattcttggatgaagatggtggtgcattagaatcggatagttt |
19597766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 329 - 379
Target Start/End: Original strand, 19597647 - 19597697
Alignment:
| Q |
329 |
aggtagtggtttctttgatgaagatggtggtgcattagaatcggatagttt |
379 |
Q |
| |
|
|||| |||| ||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19597647 |
aggtggtggattcttggatgaagatggcggtgcattagaatcggatagttt |
19597697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 19592817 - 19592874
Alignment:
| Q |
171 |
tgatatggtggtcgtggtggctgcggtgaagatggtgtattggattgtgatggtagct |
228 |
Q |
| |
|
|||||||||||| ||||| |||||| |||| |||||| ||||||||| |||||||||| |
|
|
| T |
19592817 |
tgatatggtggttgtggtcgctgcgttgaaaatggtgcattggattgggatggtagct |
19592874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 369
Target Start/End: Original strand, 19597788 - 19597828
Alignment:
| Q |
329 |
aggtagtggtttctttgatgaagatggtggtgcattagaat |
369 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
19597788 |
aggtggtgggttctttgatgaagatggtggtgcatcagaat |
19597828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University