View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21648_low_22 (Length: 353)

Name: NF21648_low_22
Description: NF21648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21648_low_22
NF21648_low_22
[»] chr7 (29 HSPs)
chr7 (70-334)||(38143827-38144091)
chr7 (1-70)||(26873702-26873772)
chr7 (1-73)||(36358399-36358472)
chr7 (1-70)||(43859090-43859160)
chr7 (1-70)||(44724152-44724222)
chr7 (1-70)||(46027679-46027749)
chr7 (1-73)||(23562736-23562809)
chr7 (1-71)||(17166864-17166935)
chr7 (1-67)||(44468110-44468177)
chr7 (1-70)||(45350051-45350120)
chr7 (1-67)||(16834366-16834433)
chr7 (1-71)||(36675576-36675647)
chr7 (12-73)||(8727718-8727779)
chr7 (1-76)||(8461692-8461768)
chr7 (3-70)||(40054298-40054366)
chr7 (1-61)||(9624004-9624065)
chr7 (6-70)||(19692467-19692532)
chr7 (12-71)||(29662931-29662991)
chr7 (4-66)||(29502224-29502287)
chr7 (8-63)||(41367666-41367722)
chr7 (1-71)||(44142762-44142831)
chr7 (5-70)||(9014391-9014457)
chr7 (20-70)||(28754813-28754863)
chr7 (11-66)||(9013819-9013875)
chr7 (13-70)||(9021434-9021490)
chr7 (19-68)||(31932010-31932059)
chr7 (11-66)||(25089978-25090034)
chr7 (26-70)||(27949682-27949726)
chr7 (44-72)||(31065729-31065757)
[»] chr3 (24 HSPs)
chr3 (1-71)||(52571514-52571585)
chr3 (1-70)||(29126133-29126203)
chr3 (1-71)||(52201980-52202051)
chr3 (1-70)||(7160380-7160450)
chr3 (1-70)||(18163717-18163787)
chr3 (1-71)||(36633485-36633556)
chr3 (1-71)||(50527723-50527794)
chr3 (1-70)||(16908898-16908968)
chr3 (1-71)||(12251597-12251668)
chr3 (1-71)||(13594963-13595034)
chr3 (5-67)||(22729222-22729285)
chr3 (1-70)||(28952481-28952551)
chr3 (5-64)||(1092971-1093031)
chr3 (1-67)||(32271007-32271074)
chr3 (1-70)||(49169792-49169862)
chr3 (1-67)||(21259524-21259591)
chr3 (5-73)||(49657305-49657372)
chr3 (11-70)||(2618884-2618944)
chr3 (30-65)||(7441702-7441737)
chr3 (11-69)||(30587497-30587555)
chr3 (1-70)||(45045209-45045278)
chr3 (27-71)||(25246343-25246387)
chr3 (1-43)||(27742512-27742555)
chr3 (20-70)||(34660753-34660803)
[»] chr1 (25 HSPs)
chr1 (1-71)||(6849751-6849822)
chr1 (1-71)||(17285382-17285453)
chr1 (1-70)||(16693037-16693107)
chr1 (1-71)||(29981795-29981866)
chr1 (1-67)||(33012145-33012212)
chr1 (1-70)||(8530082-8530152)
chr1 (1-70)||(29169941-29170011)
chr1 (1-73)||(37125689-37125762)
chr1 (1-72)||(919798-919870)
chr1 (1-68)||(44052547-44052615)
chr1 (8-70)||(9042513-9042576)
chr1 (1-71)||(47561725-47561796)
chr1 (1-70)||(42371969-42372039)
chr1 (1-70)||(48708505-48708576)
chr1 (1-72)||(9246989-9247060)
chr1 (11-68)||(37343027-37343084)
chr1 (1-60)||(23177351-23177411)
chr1 (12-68)||(43532458-43532514)
chr1 (1-69)||(46224848-46224918)
chr1 (13-62)||(17879961-17880011)
chr1 (12-70)||(24790434-24790492)
chr1 (5-66)||(15841983-15842045)
chr1 (37-70)||(45836854-45836887)
chr1 (5-70)||(8086229-8086295)
chr1 (1-73)||(1243704-1243776)
[»] chr5 (26 HSPs)
chr5 (1-70)||(3631258-3631328)
chr5 (1-70)||(13013343-13013413)
chr5 (1-73)||(9737795-9737868)
chr5 (1-70)||(25701509-25701579)
chr5 (1-70)||(26525318-26525388)
chr5 (1-70)||(8074327-8074398)
chr5 (1-67)||(16823133-16823200)
chr5 (1-70)||(19577269-19577338)
chr5 (1-65)||(29390273-29390338)
chr5 (1-69)||(43358410-43358479)
chr5 (1-68)||(43348635-43348703)
chr5 (1-70)||(30772878-30772948)
chr5 (1-72)||(41084670-41084740)
chr5 (11-69)||(28662117-28662176)
chr5 (1-71)||(7440569-7440639)
chr5 (2-73)||(20071303-20071374)
chr5 (1-71)||(26297097-26297168)
chr5 (12-70)||(26784911-26784970)
chr5 (1-70)||(5844105-5844175)
chr5 (1-66)||(9596254-9596320)
chr5 (1-47)||(15374137-15374184)
chr5 (23-62)||(6229070-6229109)
chr5 (1-70)||(20656946-20657016)
chr5 (11-71)||(16285310-16285370)
chr5 (4-69)||(20486972-20487038)
chr5 (4-71)||(22579026-22579094)
[»] chr4 (30 HSPs)
chr4 (1-70)||(6755828-6755898)
chr4 (1-71)||(27270352-27270422)
chr4 (1-70)||(40228519-40228590)
chr4 (1-70)||(11651055-11651125)
chr4 (1-70)||(18491186-18491256)
chr4 (8-70)||(36584423-36584485)
chr4 (1-70)||(44134493-44134563)
chr4 (5-70)||(44817642-44817708)
chr4 (1-70)||(51001475-51001545)
chr4 (1-68)||(2654999-2655067)
chr4 (1-71)||(13233228-13233299)
chr4 (1-71)||(19653733-19653804)
chr4 (1-70)||(31664252-31664322)
chr4 (1-70)||(16925106-16925175)
chr4 (1-67)||(38141646-38141714)
chr4 (1-71)||(31581839-31581910)
chr4 (1-61)||(13613181-13613241)
chr4 (1-69)||(44745679-44745748)
chr4 (1-70)||(52581455-52581525)
chr4 (1-71)||(36955099-36955170)
chr4 (1-71)||(43564416-43564487)
chr4 (12-70)||(22647110-22647168)
chr4 (28-70)||(13857612-13857654)
chr4 (29-70)||(13869142-13869183)
chr4 (1-69)||(18668929-18668998)
chr4 (1-66)||(29006227-29006292)
chr4 (1-67)||(4632794-4632865)
chr4 (1-66)||(9024098-9024163)
chr4 (1-58)||(18707688-18707746)
chr4 (1-34)||(12700657-12700690)
[»] chr8 (18 HSPs)
chr8 (1-71)||(9830606-9830677)
chr8 (1-70)||(41838044-41838114)
chr8 (1-70)||(4231220-4231289)
chr8 (1-70)||(24797143-24797213)
chr8 (1-73)||(1098054-1098127)
chr8 (5-67)||(5590267-5590330)
chr8 (1-70)||(3659912-3659982)
chr8 (1-70)||(3886870-3886940)
chr8 (1-70)||(7012337-7012407)
chr8 (1-69)||(6316877-6316946)
chr8 (1-70)||(38567127-38567199)
chr8 (18-70)||(34934363-34934415)
chr8 (1-69)||(1183823-1183892)
chr8 (20-71)||(11635757-11635808)
chr8 (1-70)||(21434842-21434909)
chr8 (12-63)||(8996355-8996406)
chr8 (35-70)||(10092257-10092292)
chr8 (1-49)||(42556183-42556232)
[»] chr2 (21 HSPs)
chr2 (1-71)||(6750095-6750166)
chr2 (1-71)||(38527172-38527243)
chr2 (1-70)||(22674829-22674899)
chr2 (1-70)||(38763713-38763783)
chr2 (1-68)||(34983277-34983345)
chr2 (1-71)||(13616052-13616123)
chr2 (1-70)||(23869662-23869732)
chr2 (1-70)||(28745581-28745653)
chr2 (1-71)||(44545818-44545889)
chr2 (1-70)||(2249580-2249650)
chr2 (1-70)||(36436271-36436341)
chr2 (8-70)||(1115134-1115197)
chr2 (1-68)||(41699185-41699253)
chr2 (8-70)||(1021164-1021229)
chr2 (1-70)||(34494564-34494634)
chr2 (20-64)||(42473566-42473610)
chr2 (12-70)||(7366150-7366208)
chr2 (12-70)||(32099928-32099986)
chr2 (37-69)||(12994975-12995007)
chr2 (12-66)||(40897762-40897816)
chr2 (30-67)||(2076934-2076971)
[»] chr6 (16 HSPs)
chr6 (1-72)||(2660927-2660999)
chr6 (1-68)||(24130328-24130396)
chr6 (1-71)||(24635559-24635630)
chr6 (1-70)||(12698493-12698564)
chr6 (1-70)||(9079144-9079214)
chr6 (1-70)||(16461498-16461568)
chr6 (8-70)||(12996284-12996346)
chr6 (4-70)||(10290457-10290524)
chr6 (1-71)||(13405452-13405523)
chr6 (1-70)||(8560426-8560495)
chr6 (1-70)||(11450593-11450667)
chr6 (1-70)||(26468448-26468518)
chr6 (27-71)||(2399421-2399465)
chr6 (4-62)||(31489832-31489890)
chr6 (37-69)||(15469101-15469133)
chr6 (1-65)||(23259157-23259228)
[»] scaffold0014 (1 HSPs)
scaffold0014 (1-71)||(64932-65003)
[»] scaffold0050 (1 HSPs)
scaffold0050 (4-67)||(19048-19112)
[»] scaffold0131 (1 HSPs)
scaffold0131 (26-70)||(11166-11210)
[»] scaffold0003 (1 HSPs)
scaffold0003 (2-73)||(303908-303979)


Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 70 - 334
Target Start/End: Original strand, 38143827 - 38144091
Alignment:
Q  70 gaattaaattatcataattcacaattaaacnnnnnnngtgaaatctaaaccatctaaataattataattccttacattttctttgttctttcttttatga 169  Q
    ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38143827 gaattaaattatcataattcacaattaaacaaaaaaagtgaaatctaaaccatctaaataattataattccttacattttctttgttctttcttttatga 38143926  T
Q  170 agttaagtttagatgatcactaagatacagattcttgaaaattaatcaagcagcttcagcagggtttgtaattttaaacagtgacaataatcattgccta 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  38143927 agttaagtttagatgatcactaagatacagattcttgaaaattaatcatgcagcttcagcagggtttgtaattttaaacagggacaataatcattgccta 38144026  T
Q  270 ataaagtcatttaaagtaaatgaagcagatcaatagtgcattgggatgaaaatggatagtaattt 334  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38144027 ataaagtcatttaaagtaaatgaagcagatcaatagtgcattgggatgaaaatggatagtaattt 38144091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 26873772 - 26873702
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  26873772 ataatcattgattttttaatttttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 26873702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 36358399 - 36358472
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactgaat 73  Q
    ||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||    
T  36358399 ataatcgttgattttttaatttttccaggtggaccgtggcccaccccagcccatgaagggctccgccactgaat 36358472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 43859160 - 43859090
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||    
T  43859160 ataatcgttgattttttaatttttccaggtgggccgtggcccaccctagcccatgaagggctccgccactg 43859090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 44724152 - 44724222
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  44724152 ataatagttggttttttaatttttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 44724222  T

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Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 46027749 - 46027679
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||    
T  46027749 ataatcgttgattttttaatttttccgggtggaccgtggcccaccccagcccacgaagggctccgccactg 46027679  T

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Target: chr7; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 23562736 - 23562809
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactgaat 73  Q
    ||||||||||||||||||||||| || |||||||| |||||||||||||| |||||||||||||||||||||||    
T  23562736 ataatcgttgattttttaatttttccaggtgggccatggcccaccccagctcatgaagggctccgccactgaat 23562809  T

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Target: chr7; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 17166935 - 17166864
Alignment:
Q  1 ataatcgttgattttttaattttcc-gggtgggccgtggcccaccccagcccatgaagggctccgccactga 71  Q
    ||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||    
T  17166935 ataattgttgattttttaatttttctgggtgggccgtggcccaccccagcccatgaagggctccgccgctga 17166864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 44468110 - 44468177
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgcca 67  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||    
T  44468110 ataatcgttgattttttaatttttccaggtgggccgtggcccaccccagcctatgaagggctccgcca 44468177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 45350120 - 45350051
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||    
T  45350120 ataatcgttgattttttaatttttccgggtggaccgtggcccaccc-agcccatgaagggctccgccactg 45350051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 16834366 - 16834433
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgcca 67  Q
    ||||||||||||||||| ||||| |||| |||||| ||||||||||||||||||||||||||||||||    
T  16834366 ataatcgttgatttttttatttttccggatgggccatggcccaccccagcccatgaagggctccgcca 16834433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 36675576 - 36675647
Alignment:
Q  1 ataatcgttgattttttaattttc-cgggtgggccgtggcccaccccagcccatgaagggctccgccactga 71  Q
    |||||| || |||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||    
T  36675576 ataatcattaattttttaattttttcggatgggccgtggcccaccccagcccatgaagggctccgccactga 36675647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 8727779 - 8727718
Alignment:
Q  12 ttttttaattttccgggtgggccgtggcccaccccagcccatgaagggctccgccactgaat 73  Q
    |||||||||||| |||||||| |||||||||||| |||||||||||||||||||| ||||||    
T  8727779 ttttttaatttttcgggtgggtcgtggcccaccctagcccatgaagggctccgcctctgaat 8727718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 8461768 - 8461692
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactgaattaa 76  Q
    ||||||||| ||||||||||||| || |||||| |||| |||||||||||||||||||||||| |||||||| ||||    
T  8461768 ataatcgttaattttttaatttttccaggtgggtcgtgacccaccccagcccatgaagggctctgccactgatttaa 8461692  T

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Target: chr7; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 40054366 - 40054298
Alignment:
Q  3 aatcgttgattttttaat-tttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    |||||||||||||||||| |||||| ||| ||||||||||||||||||||||| |||| ||||||||||    
T  40054366 aatcgttgattttttaatctttccgagtgagccgtggcccaccccagcccatggagggttccgccactg 40054298  T

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Target: chr7; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 9624065 - 9624004
Alignment:
Q  1 ataatcgttgattttttaatttt--ccgggtgggccgtggcccaccccagcccatgaagggct 61  Q
    |||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||    
T  9624065 ataatcgttgattttttaatttttcccgggtgggccgtggccca-cccagcccatgaagggct 9624004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 19692532 - 19692467
Alignment:
Q  6 cgttgattttttaa-ttttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    |||| ||||||||| |||||| ||||| |||||| |||||||||||||||||||||||||||||||    
T  19692532 cgttaattttttaacttttccaggtggaccgtggtccaccccagcccatgaagggctccgccactg 19692467  T

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Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 29662991 - 29662931
Alignment:
Q  12 ttttttaattttc-cgggtgggccgtggcccaccccagcccatgaagggctccgccactga 71  Q
    ||||||||||||  |||||||||||| |||||||| |||||||||||||||||||||||||    
T  29662991 ttttttaattttttcgggtgggccgtagcccaccctagcccatgaagggctccgccactga 29662931  T

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Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 29502224 - 29502287
Alignment:
Q  4 atcgttgattttttaa-ttttccgggtgggccgtggcccaccccagcccatgaagggctccgcc 66  Q
    |||||| ||||||||| |||| ||||||||| ||||||||||| ||||||||||||||||||||    
T  29502224 atcgttaattttttaaatttttcgggtgggctgtggcccaccctagcccatgaagggctccgcc 29502287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 41367722 - 41367666
Alignment:
Q  8 ttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctcc 63  Q
    |||||||||||||||| |||||||  ||||||||||||||| |||||||||||||||    
T  41367722 ttgattttttaatttttccgggtgaaccgtggcccaccccaacccatgaagggctcc 41367666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 44142831 - 44142762
Alignment:
Q  1 ataatcgttgattttttaattttccggg-tgggccgtggcccaccccagcccatgaagggctccgccactga 71  Q
    ||||||||||||||||||||||| | || |||||||  |||||||| ||||||||||||||| |||||||||    
T  44142831 ataatcgttgattttttaatttttctggatgggccg--gcccacccgagcccatgaagggcttcgccactga 44142762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 9014457 - 9014391
Alignment:
Q  5 tcgttgattttttaattttccg-ggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||| ||||||||||||| |  ||| || ||||||||||| |||||||||||||||||||||||||    
T  9014457 tcgttaattttttaatttttctaggtaggtcgtggcccaccacagcccatgaagggctccgccactg 9014391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 28754863 - 28754813
Alignment:
Q  20 ttttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    |||||| |||||||| |||||||||| |||||||||| |||||||||||||    
T  28754863 ttttccaggtgggccatggcccaccctagcccatgaaaggctccgccactg 28754813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 9013875 - 9013819
Alignment:
Q  11 attttttaattttcc-gggtgggccgtggcccaccccagcccatgaagggctccgcc 66  Q
    ||||||||||||| | |||| |||| | |||||||||||||||||||||||||||||    
T  9013875 attttttaatttttctgggttggccattgcccaccccagcccatgaagggctccgcc 9013819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 9021490 - 9021434
Alignment:
Q  13 tttttaattttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    |||||| ||||| | |||||||||| ||||||| ||||||||||||||||| ||||||    
T  9021490 tttttatttttctgtgtgggccgtg-cccaccctagcccatgaagggctccaccactg 9021434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 31932010 - 31932059
Alignment:
Q  19 attttccgggtgggccgtggcccaccccagcccatgaagggctccgccac 68  Q
    ||||||||| ||||||  |||||||||||| ||||||||| |||||||||    
T  31932010 attttccggatgggccacggcccaccccagtccatgaaggactccgccac 31932059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 25090034 - 25089978
Alignment:
Q  11 attttttaattttccggg-tgggccgtggcccaccccagcccatgaagggctccgcc 66  Q
    ||||||||||||| | || ||||||||||||||||| || ||||||| |||||||||    
T  25090034 attttttaatttttctggatgggccgtggcccaccctagtccatgaacggctccgcc 25089978  T

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Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 27949726 - 27949682
Alignment:
Q  26 gggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||||||||||||||||||  ||||||||  |||||||||||||    
T  27949726 gggtgggccgtggcccaccctggcccatgagtggctccgccactg 27949682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 72
Target Start/End: Original strand, 31065729 - 31065757
Alignment:
Q  44 cccagcccatgaagggctccgccactgaa 72  Q
    |||||||||||||||||||||||||||||    
T  31065729 cccagcccatgaagggctccgccactgaa 31065757  T

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Target: chr3 (Bit Score: 64; Significance: 6e-28; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 52571514 - 52571585
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactga 71  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  52571514 ataatcgttgattttttaatttttccgggtgggccgtggcccaccccagcccatgaagggctccgccactga 52571585  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 29126133 - 29126203
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  29126133 ataatcgttgattttttaatttttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 29126203  T

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Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 52202051 - 52201980
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactga 71  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  52202051 ataatcgttgattttttaatttttccgggtgggccgtgacccaccccagcccatgaagggctccgccactga 52201980  T

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Target: chr3; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 7160380 - 7160450
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  7160380 ataatcgttgattttttaatttttccgggtgggccgtggcccaccccagcccatgaaaggctccgccactg 7160450  T

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Target: chr3; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 18163787 - 18163717
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  18163787 ataatcgttgatttttttatttttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 18163717  T

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Target: chr3; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 36633556 - 36633485
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactga 71  Q
    ||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||    
T  36633556 ataatcgttgattttttaatttttccggatgggtcgtggcccaccccagcccatgaagggctccgccactga 36633485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 50527723 - 50527794
Alignment:
Q  1 ataatcgttgattttttaattttc-cgggtgggccgtggcccaccccagcccatgaagggctccgccactga 71  Q
    |||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  50527723 ataaacgttgattttttaattttttcgggtgggccgtggcccaccccagcccatgaagggctccgccactga 50527794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 16908898 - 16908968
Alignment:
Q  1 ataatcgttga-ttttttaattttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  16908898 ataatcgttgaattttttatttttccgggtgggccgtggcccaccccagcccatgaagggctctgccactg 16908968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 12251597 - 12251668
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactga 71  Q
    |||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  12251597 ataatcgttgatttttaaatttttccgggtgggccgtggtccaccccagcccatgaagggctctgccactga 12251668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 13594963 - 13595034
Alignment:
Q  1 ataatcgttgattttttaattttc-cgggtgggccgtggcccaccccagcccatgaagggctccgccactga 71  Q
    |||||||||||||||||||||||  | ||||||||||||||||||||||||||||| |||||||||||||||    
T  13594963 ataatcgttgattttttaattttttcaggtgggccgtggcccaccccagcccatgacgggctccgccactga 13595034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 22729285 - 22729222
Alignment:
Q  5 tcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgcca 67  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  22729285 tcgttgattttttaatttttccgggtgggccgtggcccaccccagcccattaagggctccgcca 22729222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 28952481 - 28952551
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||||||||||||||||||||| || |||||  |||||||||||||||||||||||||||||||||||||    
T  28952481 ataatcgttgattttttaatttttccaggtggatcgtggcccaccccagcccatgaagggctccgccactg 28952551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 1092971 - 1093031
Alignment:
Q  5 tcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccg 64  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  1092971 tcgttgattttttaatttttccgggtgggccgtggcccacctcagcccatgaagggctccg 1093031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 32271007 - 32271074
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgcca 67  Q
    |||||| |||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||    
T  32271007 ataatcattgattttttaatttttccgggtgggctgtggcccaccccagcccatgaaaggctccgcca 32271074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 49169862 - 49169792
Alignment:
Q  1 ataatcgttgattttttaa-ttttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||||||||||||||| | ||||| |||||||  ||||||||||||||||||| ||||||||||||||||    
T  49169862 ataatcgttgatttttttacttttctgggtgggttgtggcccaccccagcccataaagggctccgccactg 49169792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 21259524 - 21259591
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgcca 67  Q
    |||||||||||||||| |||||| |||| |||| |||||||||| ||| |||||||||||||||||||    
T  21259524 ataatcgttgatttttaaatttttccggatgggtcgtggcccactccaacccatgaagggctccgcca 21259591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 49657305 - 49657372
Alignment:
Q  5 tcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactgaat 73  Q
    ||||||||||||||||||| |||||||||||||| |||| ||||||||||||| ||||||||| ||||||    
T  49657305 tcgttgattttttaatttttccgggtgggccgtgaccca-cccagcccatgaa-ggctccgccgctgaat 49657372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 2618944 - 2618884
Alignment:
Q  11 attttttaattttc-cgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    |||||||||||||  ||| |||||||||||||||| || ||||||||||||||||||||||    
T  2618944 attttttaattttttcggatgggccgtggcccacctcaacccatgaagggctccgccactg 2618884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 7441702 - 7441737
Alignment:
Q  30 gggccgtggcccaccccagcccatgaagggctccgc 65  Q
    ||||||||||||||||||||||||||||||||||||    
T  7441702 gggccgtggcccaccccagcccatgaagggctccgc 7441737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 30587555 - 30587497
Alignment:
Q  11 attttttaattttccgggtgggccgtggcccaccccagcccatgaagggctccgccact 69  Q
    ||||||||||||| |||||||| | |||||||||||| || |||||||||||| |||||    
T  30587555 attttttaatttttcgggtgggtcctggcccaccccaacctatgaagggctccaccact 30587497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 45045278 - 45045209
Alignment:
Q  1 ataatcgttgattttttaattttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    |||||| ||||||||||||||||   |||||||| | |||||||||| ||||||||| ||||||| ||||    
T  45045278 ataatcattgattttttaattttttcggtgggccatcgcccaccccaacccatgaagagctccgcaactg 45045209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 25246343 - 25246387
Alignment:
Q  27 ggtgggccgtggcccaccccagcccatgaagggctccgccactga 71  Q
    |||||| |||||||||||||||| |||||| ||||||||||||||    
T  25246343 ggtgggtcgtggcccaccccagctcatgaaaggctccgccactga 25246387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 27742555 - 27742512
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccac 43  Q
    |||| |||||||||||||||||| ||||||||||||||||||||    
T  27742555 ataagcgttgattttttaatttttccgggtgggccgtggcccac 27742512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 34660803 - 34660753
Alignment:
Q  20 ttttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    |||| ||| |||||||||||||||||||  |||||||| ||||||||||||    
T  34660803 tttttcggatgggccgtggcccaccccaatccatgaagagctccgccactg 34660753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 6849822 - 6849751
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactga 71  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6849822 ataatcgttgattttttaatttttccgggtgggccgtggcccaccccagcccatgaagggctccgccactga 6849751  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 17285382 - 17285453
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactga 71  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17285382 ataatcgttgattttttaatttttccgggtgggccgtggcccaccccagcccatgaagggctccgccactga 17285453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 16693037 - 16693107
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  16693037 ataatcgttgattttttaatttttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 16693107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 29981795 - 29981866
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactga 71  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  29981795 ataatcgttgattttttaatttttccggatgggccgtggcccaccccagcccatgaagggctccgccactga 29981866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 33012145 - 33012212
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgcca 67  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  33012145 ataatcgttgattttttaatttttccgggtgggccgtggcccaccccagcccatgaagggctccgcca 33012212  T

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Target: chr1; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 8530152 - 8530082
Alignment:
Q  1 ataatcgttgattttttaattttc-cgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  8530152 ataatcgttgattttttaattttttcgggtgggccgtggcccaccccagcccatgaagggctccgccactg 8530082  T

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Target: chr1; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 29170011 - 29169941
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  29170011 ataatcgttgattttttaatttttccgggtgggctgtggcccaccccagcccatgaagggctccgccactg 29169941  T

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Target: chr1; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 37125762 - 37125689
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactgaat 73  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  37125762 ataatcgttgattttataatttttccgggtgggccgtggcccacctcagcccatgaagggctccgccactgaat 37125689  T

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Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 919798 - 919870
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactgaa 72  Q
    |||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||| |||||||    
T  919798 ataatcgttgatttttaaatttttccggatgggccgtggcccaccccagcccatgaagggctccgtcactgaa 919870  T

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Target: chr1; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 44052547 - 44052615
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccac 68  Q
    |||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  44052547 ataatcgttgatttttaaatttttccgggtgagccgtggcccaccccagcccatgaagggctccgccac 44052615  T

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Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 9042513 - 9042576
Alignment:
Q  8 ttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    |||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||    
T  9042513 ttgattttttaatttttccggatgggccgtggcccagcccagcccatgaagggctccgccactg 9042576  T

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Target: chr1; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 47561796 - 47561725
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactga 71  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||| | || ||||||||||||||||||||    
T  47561796 ataatcgttgatttttttatttttccgggtgggccgtggcccacccaaacctatgaagggctccgccactga 47561725  T

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Target: chr1; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 42372039 - 42371969
Alignment:
Q  1 ataatcgttgattttttaattttcc-gggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    |||||| |||||||||||||||| | ||||||||||||||||||||||  |||||||||||||||||||||    
T  42372039 ataatcattgattttttaatttttctgggtgggccgtggcccaccccaatccatgaagggctccgccactg 42371969  T

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Target: chr1; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 48708505 - 48708576
Alignment:
Q  1 ataatcgttgattttttaa--ttttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||||||||||||||| |  |||| ||| ||||||||||| ||||||||||||||||||||||||||||||    
T  48708505 ataatcgttgatttttttaattttttcggatgggccgtggctcaccccagcccatgaagggctccgccactg 48708576  T

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Target: chr1; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 9246989 - 9247060
Alignment:
Q  1 ataatcgttgattttttaattttccgggtgggccgtggcccaccccagcccatgaagggctccgccactgaa 72  Q
    |||||| || ||||||||||||| ||||||||  |||||||||| |||||||||||||||||| ||||||||    
T  9246989 ataatccttaattttttaatttttcgggtgggttgtggcccacctcagcccatgaagggctccaccactgaa 9247060  T

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Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 37343084 - 37343027
Alignment:
Q  11 attttttaattttccgggtgggccgtggcccaccccagcccatgaagggctccgccac 68  Q
    |||||| | ||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  37343084 atttttaatttttccgagtgggccgtggccgaccccagcccatgaagggctccgccac 37343027  T

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Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 23177411 - 23177351
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggc 60  Q
    |||||||||||||||| |||||| |||||||| |||||||||||||||||||| |||||||    
T  23177411 ataatcgttgatttttaaatttttccgggtggaccgtggcccaccccagcccacgaagggc 23177351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 43532458 - 43532514
Alignment:
Q  12 ttttttaattttccgggtgggccgtggcccaccccagcccatgaagggctccgccac 68  Q
    ||||||| |||||||| ||||||||||||||||||| |||||| |||||||||||||    
T  43532458 ttttttatttttccggatgggccgtggcccaccccaacccatggagggctccgccac 43532514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 46224848 - 46224918
Alignment:
Q  1 ataatcgttgattttttaa--ttttccgggtgggccgtggcccaccccagcccatgaagggctccgccact 69  Q
    ||||||||| ||||||| |  |||| ||||||| ||||||||||||||| |||||||||||||||||||||    
T  46224848 ataatcgttaatttttttaattttttcgggtggaccgtggcccaccccaacccatgaagggctccgccact 46224918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 17879961 - 17880011
Alignment:
Q  13 tttttaattttcc-gggtgggccgtggcccaccccagcccatgaagggctc 62  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  17879961 tttttaattttcccgggtgggccgtgacccaccccagcccatgaagggctc 17880011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 24790492 - 24790434
Alignment:
Q  12 ttttttaattttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||||| ||||| ||||||| |||||||||| ||||||||||||||||||| ||||||    
T  24790492 ttttttatttttctgggtgggtcgtggcccactccagcccatgaagggctccaccactg 24790434  T

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Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 15842045 - 15841983
Alignment:
Q  5 tcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgcc 66  Q
    ||||| ||||||||||||| || |||||| ||||||||||||||||||||||| || ||||||    
T  15842045 tcgttaattttttaatttttccaggtgggtcgtggcccaccccagcccatgaaagggtccgcc 15841983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 45836887 - 45836854
Alignment:
Q  37 ggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||||||||||||||||||||||||||||||||    
T  45836887 ggcccaccccagcccatgaagggctccgccactg 45836854  T

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Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 8086295 - 8086229
Alignment:
Q  5 tcgttgattttttaattttc-cgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    |||||||||||||||||||  ||||||| ||||| ||||||  |||| |||||| ||||||||||||    
T  8086295 tcgttgattttttaattttttcgggtggaccgtgacccaccttagcctatgaagagctccgccactg 8086229  T

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Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 1243704 - 1243776
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactgaat 73  Q
    ||||| ||| ||||||||||||| ||||||| ||||||||  | || |||||||||||||||||||| ||||||    
T  1243704 ataattgttaattttttaatttttccgggtgagccgtggct-atccgagcccatgaagggctccgcctctgaat 1243776  T

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Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 3631328 - 3631258
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3631328 ataatcgttgattttttaatttttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 3631258  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 13013343 - 13013413
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  13013343 ataatcgttgattttttaatttttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 13013413  T

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Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 9737795 - 9737868
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactgaat 73  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9737795 ataatcgttaattttttaatttttccgggtgggccgtggcccaccccagcccatgaagggctccgccactgaat 9737868  T

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Target: chr5; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 25701509 - 25701579
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  25701509 ataatcgttgattttttaatttttccggatgggccgtggcccaccccagcccatgaagggctccgccactg 25701579  T

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Target: chr5; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 26525318 - 26525388
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  26525318 ataatcgttgatttttttatttttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 26525388  T

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Target: chr5; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 8074327 - 8074398
Alignment:
Q  1 ataatcgttgattttttaa--ttttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    |||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8074327 ataatcgttgattttttaaaattttccaggtgggccgtggcccaccccagcccatgaagggctccgccactg 8074398  T

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Target: chr5; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 16823200 - 16823133
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgcca 67  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  16823200 ataatcgttgattttttaatttttccggatgggccgtggcccaccccagcccatgaagggctccgcca 16823133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 19577269 - 19577338
Alignment:
Q  1 ataatcgttgattttttaattttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||||||| |||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  19577269 ataatcgttaattttttatttttccgggtgggccgtggcccaccttagcccatgaagggctccgccactg 19577338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 29390338 - 29390273
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgc 65  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  29390338 ataatcgttgattttttaatttttccaggtgggccgtggcccaccccagcccatgaagggctccgc 29390273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 43358479 - 43358410
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccact 69  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  43358479 ataatcgttgattttttcatttttccgggtgggccgtggcccacctcagcccatgaagggctccgccact 43358410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 43348703 - 43348635
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccac 68  Q
    ||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  43348703 ataatcgttaattttttaatttttccgggtgggccgtggcccgccccagcccatgaagggctccgccac 43348635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 30772948 - 30772878
Alignment:
Q  1 ataatcgttgattttttaattttc-cgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    |||||||||||||||||||||||  |||||| |||||||||||||||| ||||||||||||||||||||||    
T  30772948 ataatcgttgattttttaattttttcgggtgagccgtggcccaccccaacccatgaagggctccgccactg 30772878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 41084670 - 41084740
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactgaa 72  Q
    ||||||||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||    
T  41084670 ataatcgttgattttttaatttttccgggtggaccg--gcccaccccagcccatgaagggctccgccactgaa 41084740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 28662176 - 28662117
Alignment:
Q  11 attttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccact 69  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  28662176 attttttaatttttccgggtgggccgtggcccaccccagcccataaagggctccgccact 28662117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 7440569 - 7440639
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactga 71  Q
    ||||||||||||||||||||||| || |||||||||| |||||||| | |||||||||||||||||||||||    
T  7440569 ataatcgttgattttttaatttttccaggtgggccgtagcccacccaa-cccatgaagggctccgccactga 7440639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 20071303 - 20071374
Alignment:
Q  2 taatcgttgattttttaattttccgggtgggccgtggcccaccccagcccatgaagggctccgccactgaat 73  Q
    |||||||| |||||| | ||||||| |||||||||| ||||||| |||||||||||||||||||| ||||||    
T  20071303 taatcgttaatttttaatttttccgagtgggccgtgacccaccctagcccatgaagggctccgcctctgaat 20071374  T

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Target: chr5; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 26297097 - 26297168
Alignment:
Q  1 ataatcgttgattttttaattttc-cgggtgggccgtggcccaccccagcccatgaagggctccgccactga 71  Q
    ||||| |||||||||||||||||  ||||||| |||||||||| |||||| |||||||||||||||||||||    
T  26297097 ataattgttgattttttaattttttcgggtggaccgtggcccatcccagctcatgaagggctccgccactga 26297168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 26784970 - 26784911
Alignment:
Q  12 ttttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    |||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||    
T  26784970 ttttttaatttttccgggtgggccgtggcccacctaagcccatgaagggctccgccactg 26784911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 5844175 - 5844105
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||||||||||||||||||||| |||| || ||||| |||||||||| ||||| ||||||||||||||||    
T  5844175 ataatcgttgattttttaatttttccggatgtgccgtagcccaccccaacccattaagggctccgccactg 5844105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 9596254 - 9596320
Alignment:
Q  1 ataatcgttgattttttaattttcc-gggtgggccgtggcccaccccagcccatgaagggctccgcc 66  Q
    |||||||||||||||||||||||   |||||||||||||||||||||||||  ||||||||||||||    
T  9596254 ataatcgttgattttttaatttttttgggtgggccgtggcccaccccagcctttgaagggctccgcc 9596320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 15374184 - 15374137
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccacccca 47  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  15374184 ataatcgttgattttttaatttttccgggtgggccgtggcccacccca 15374137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 6229070 - 6229109
Alignment:
Q  23 tccgggtgggccgtggcccaccccagcccatgaagggctc 62  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  6229070 tccgggtgggctgtggcccaccccagcccatgaagggctc 6229109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 20656946 - 20657016
Alignment:
Q  1 ataatcgttgattttttaattttc-cgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||| |||||||||||||||||  ||| | |||| ||||||||||||||| ||||| |||||||||||||    
T  20656946 ataattgttgattttttaattttttcggataggccatggcccaccccagcctatgaaaggctccgccactg 20657016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 16285310 - 16285370
Alignment:
Q  11 attttttaattttccgggtgggccgtggcccaccccagcccatgaagggctccgccactga 71  Q
    |||||||| |||||  ||||| |||||| | |||||||||||||||||||||| |||||||    
T  16285310 attttttatttttctaggtggaccgtggtcgaccccagcccatgaagggctccaccactga 16285370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 20487038 - 20486972
Alignment:
Q  4 atcgttgattttttaattttc-cgggtgggccgtggcccaccccagcccatgaagggctccgccact 69  Q
    |||||| |||||||||||||  || ||||||||||||||| |  |||||||||||||||| ||||||    
T  20487038 atcgttaattttttaattttttcgagtgggccgtggcccagcttagcccatgaagggctctgccact 20486972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 22579026 - 22579094
Alignment:
Q  4 atcgttgattttttaattttc-cgggtgggccgtggcccaccccagcccatgaagggctccgccactga 71  Q
    |||||| ||||| || ||||| |||||| | |||||||||||| ||||||||||||| |||||| ||||    
T  22579026 atcgttaattttatagttttctcgggtgagtcgtggcccaccctagcccatgaagggatccgcctctga 22579094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 6755898 - 6755828
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6755898 ataatcgttgattttttaatttttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 6755828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 27270422 - 27270352
Alignment:
Q  1 ataatcgttgattttttaattttccgggtgggccgtggcccaccccagcccatgaagggctccgccactga 71  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27270422 ataatcattgattttttaattttccgggtgggctgtggcccaccccagcccatgaagggctccgccactga 27270352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 40228519 - 40228590
Alignment:
Q  1 ataatcgttgattttttaa--ttttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40228519 ataatcgttgattttttaaatttttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 40228590  T

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Target: chr4; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 11651055 - 11651125
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  11651055 ataatcgttgattttttaatttttccgggcgggccgtggcccaccccagcccatgaagggctccgccactg 11651125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 18491256 - 18491186
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  18491256 ataatcgttgattttttaatttttccgagtgggccgtggcccaccccagcccatgaagggctccgccactg 18491186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 36584485 - 36584423
Alignment:
Q  8 ttgattttttaattttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36584485 ttgattttttatttttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 36584423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 44134563 - 44134493
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  44134563 ataatcgttgattttttaatttttccgggtggaccgtggcccaccccagcccatgaagggctccgccactg 44134493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 44817642 - 44817708
Alignment:
Q  5 tcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  44817642 tcgttgattttttaatttttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 44817708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 51001545 - 51001475
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  51001545 ataaacgttgattttttaatttttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 51001475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 2654999 - 2655067
Alignment:
Q  1 ataatcgttgattttttaattttc-cgggtgggccgtggcccaccccagcccatgaagggctccgccac 68  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  2654999 ataatcgttgattttttaattttttcgggtgggccgtggcccaccccagcccatgaagggctccgccac 2655067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 13233299 - 13233228
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactga 71  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  13233299 ataatcgttgattttttaatttttccgggtgggccgtggcccaccccagcctatgaaggactccgccactga 13233228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 19653733 - 19653804
Alignment:
Q  1 ataatcgttgattttttaattttccgg-gtgggccgtggcccaccccagcccatgaagggctccgccactga 71  Q
    ||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19653733 ataatcgttgatttttttatttttcggtgtgggccgtggcccaccccagcccatgaagggctccgccactga 19653804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 31664252 - 31664322
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  31664252 ataatcattgattttttaatttttccgggtgggccgtggcccaccccatcccatgaagggctccgccactg 31664322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 16925175 - 16925106
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||    
T  16925175 ataatcgttgattttttaatttttccgggtggaccgtggcccacccc-gcccatgaagggctccgccactg 16925106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 38141646 - 38141714
Alignment:
Q  1 ataatcgttgattttttaa--ttttccgggtgggccgtggcccaccccagcccatgaagggctccgcca 67  Q
    ||||||||||||||||| |  |||||||||||||||||||||| |||||||||||||||||||||||||    
T  38141646 ataatcgttgatttttttaatttttccgggtgggccgtggccctccccagcccatgaagggctccgcca 38141714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 31581839 - 31581910
Alignment:
Q  1 ataatcgttgattttttaattttccggg-tgggccgtggcccaccccagcccatgaagggctccgccactga 71  Q
    |||||||||| |||||||||||| |||| ||| ||||||||||||||||||||||||||||| |||||||||    
T  31581839 ataatcgttgtttttttaatttttcggggtggaccgtggcccaccccagcccatgaagggcttcgccactga 31581910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 13613181 - 13613241
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggct 61  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  13613181 ataatcgttgattttttaatttttccgggtgggccgtggccca-cccagcccatgaagggct 13613241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 44745679 - 44745748
Alignment:
Q  1 ataatcgttgattttttaattttccggg-tgggccgtggcccaccccagcccatgaagggctccgccact 69  Q
    ||||||||||||||||||||||| | || ||||||||||||||||||||||||| || ||||||||||||    
T  44745679 ataatcgttgattttttaatttttctggatgggccgtggcccaccccagcccattaaaggctccgccact 44745748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 52581525 - 52581455
Alignment:
Q  1 ataatcgttgatttttt--aattttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    |||||||||||||||||  | |||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  52581525 ataatcgttgattttttttatttttccggatgggccgtggcccaccc-agcccatgaagggctccgccactg 52581455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 36955099 - 36955170
Alignment:
Q  1 ataatcgttgattttttaattttccggg-tgggccgtggcccaccccagcccatgaagggctccgccactga 71  Q
    |||||||||||||||||||||||  ||| |||| |  |||||||||||||||||||||||||||||||||||    
T  36955099 ataatcgttgattttttaattttttgggatgggtcacggcccaccccagcccatgaagggctccgccactga 36955170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 43564487 - 43564416
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactga 71  Q
    ||||||||||||||||||||||| |||| ||| | |||||||||||||||| |||||| |||||||||||||    
T  43564487 ataatcgttgattttttaatttttccggatggactgtggcccaccccagccaatgaagagctccgccactga 43564416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 22647168 - 22647110
Alignment:
Q  12 ttttttaattttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||||| ||||| || |||||||||||||||| |||||||||||||||||||||||||    
T  22647168 ttttttatttttctggatgggccgtggcccacctcagcccatgaagggctccgccactg 22647110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 13857654 - 13857612
Alignment:
Q  28 gtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    |||||||||||||||||| ||||||||||||||| ||||||||    
T  13857654 gtgggccgtggcccaccctagcccatgaagggcttcgccactg 13857612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 13869183 - 13869142
Alignment:
Q  29 tgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||||||||||||||| | ||||||||||||||||||||||    
T  13869183 tgggccgtggcccaccctaacccatgaagggctccgccactg 13869142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 18668998 - 18668929
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccact 69  Q
    ||||||||| ||||||||||||| || |||||||||||  | |||| ||||||||||||||||| |||||    
T  18668998 ataatcgttaattttttaatttttccaggtgggccgtgatcaaccctagcccatgaagggctccaccact 18668929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 29006292 - 29006227
Alignment:
Q  1 ataatcgttgattttttaattttccgggtgggccgtggcccaccccagcccatgaagggctccgcc 66  Q
    ||||| ||| |||||| |||||| ||| ||| ||||||||||| ||||||||| ||||||||||||    
T  29006292 ataatagttaatttttaaatttttcggatggaccgtggcccactccagcccataaagggctccgcc 29006227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 4632794 - 4632865
Alignment:
Q  1 ataatcgttgattttttaattttccgggtggg-----ccgtggcccaccccagcccatgaagggctccgcca 67  Q
    |||||||||| |||||||||||| ||||||||     |||||||||| | |||||||||||||||| |||||    
T  4632794 ataatcgttgtttttttaatttttcgggtggggttggccgtggcccatcacagcccatgaagggcttcgcca 4632865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 9024163 - 9024098
Alignment:
Q  1 ataatcgttgattttttaattttc-cgggtgggccgtggcccaccccagcccatgaagggctccgcc 66  Q
    |||||| || |||||||||||||  |||||||||||||||||| |||| ||||| ||||||||||||    
T  9024163 ataatcattaattttttaattttttcgggtgggccgtggccca-cccatcccataaagggctccgcc 9024098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 18707746 - 18707688
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagg 58  Q
    ||||||||| ||||||||||||| ||||||||||||||| |||||| ||| || |||||    
T  18707746 ataatcgttaattttttaattttgccgggtgggccgtggtccaccctagctcacgaagg 18707688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 12700657 - 12700690
Alignment:
Q  1 ataatcgttgattttttaattttccgggtgggcc 34  Q
    |||||||||||||||| |||||||||||||||||    
T  12700657 ataatcgttgatttttcaattttccgggtgggcc 12700690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 9830677 - 9830606
Alignment:
Q  1 ataatcgttgattttttaattttc-cgggtgggccgtggcccaccccagcccatgaagggctccgccactga 71  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  9830677 ataatcgttgattttttaattttttcgggtgggccgtggcccaccccagcccatgaagggctccgccactga 9830606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 41838044 - 41838114
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  41838044 ataatcgttgattttttaatttttccgggcgggccgtggcccaccccagcccatgaagggctccgccactg 41838114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 4231289 - 4231220
Alignment:
Q  1 ataatcgttgattttttaattttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||    
T  4231289 ataatcgttgattttttaatttttcgggtgggccgtggcccaccctagcccatgaaggggtccgccactg 4231220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 24797143 - 24797213
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    |||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  24797143 ataatcgttgatttttaaatttttccggatgggccgtggcccaccccagcccatgaagggctccgccactg 24797213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 1098127 - 1098054
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactgaat 73  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||  ||||||||||||||||||||||||    
T  1098127 ataatcgttgattttttaatttttccgggtgggccgtggcccacctcacgccatgaagggctccgccactgaat 1098054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 5590267 - 5590330
Alignment:
Q  5 tcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgcca 67  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  5590267 tcgttgattttttaatttttccgggtgggccgtggcccaccccagcccattaagggctccgcca 5590330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 3659912 - 3659982
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||||||||||||| ||||||| |||||||||| |||||||| |||||||||||||||||||||||||||    
T  3659912 ataatcgttgattttataatttttccgggtgggctgtggcccatcccagcccatgaagggctccgccactg 3659982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 3886870 - 3886940
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||||||||||||||||||||| |||||||  |||||||| |||||||||||||||||||||||||||||    
T  3886870 ataatcgttgattttttaatttttccgggtgaaccgtggcctaccccagcccatgaagggctccgccactg 3886940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 7012407 - 7012337
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    |||||| |||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||    
T  7012407 ataatcattgattttttaatttttccgagtgagccgtggcccaccccagcccatgaagggctccgccactg 7012337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 6316946 - 6316877
Alignment:
Q  1 ataatcgttgattttttaattttc-cgggtgggccgtggcccaccccagcccatgaagggctccgccact 69  Q
    ||||| |||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||    
T  6316946 ataattgttgattttttaattttttcgggtgggccgtggcccaccccagcccatgaaaggctccgccact 6316877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 38567199 - 38567127
Alignment:
Q  1 ataatcgttgattttttaattttcc--gggtgggccgtggcccacccc-agcccatgaagggctccgccactg 70  Q
    ||||||||||||||||||||||| |  ||||||||||||||||||||| ||||||||||||||||||||||||    
T  38567199 ataatcgttgattttttaatttttcctgggtgggccgtggcccacccccagcccatgaagggctccgccactg 38567127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 34934363 - 34934415
Alignment:
Q  18 aattttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  34934363 aatttttcgggtgggccgtggcccaccccagcccatgaagggctccgccactg 34934415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 1183892 - 1183823
Alignment:
Q  1 ataatcgttgattttttaattttccgggt-gggccgtggcccaccccagcccatgaagggctccgccact 69  Q
    ||||||||| |||||||||||||    || ||||||||||||||||||||||||||||||||||||||||    
T  1183892 ataatcgtttattttttaattttttttgttgggccgtggcccaccccagcccatgaagggctccgccact 1183823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 11635808 - 11635757
Alignment:
Q  20 ttttccgggtgggccgtggcccaccccagcccatgaagggctccgccactga 71  Q
    |||| |||||||| |||||||||||| |||||||||||||||||||||||||    
T  11635808 tttttcgggtgggtcgtggcccaccctagcccatgaagggctccgccactga 11635757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 21434909 - 21434842
Alignment:
Q  1 ataatcgttgattttttaa-ttttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||||||||||||||||| |||||||| ||||||   |||||| |||| ||||||| |||||||||||||    
T  21434909 ataatcgttgattttttaatttttccggatgggcc---gcccactccagtccatgaaaggctccgccactg 21434842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 8996406 - 8996355
Alignment:
Q  12 ttttttaattttccgggtgggccgtggcccaccccagcccatgaagggctcc 63  Q
    |||||||||||||| |||| |||||||||||||| | |||| ||||||||||    
T  8996406 ttttttaattttccaggtgagccgtggcccaccctaacccaagaagggctcc 8996355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 70
Target Start/End: Complemental strand, 10092292 - 10092257
Alignment:
Q  35 gtggcccaccccagcccatgaagggctccgccactg 70  Q
    |||||||||||||||||||||||||||||| |||||    
T  10092292 gtggcccaccccagcccatgaagggctccgtcactg 10092257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 42556183 - 42556232
Alignment:
Q  1 ataatcgttgattttttaa-ttttccgggtgggccgtggcccaccccagc 49  Q
    ||||||||||||||||||| |||||||| ||| ||||||||| |||||||    
T  42556183 ataatcgttgattttttaatttttccggatggaccgtggcccgccccagc 42556232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 6750095 - 6750166
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactga 71  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6750095 ataatcgttgatttttaaatttttccgggtgggccgtggcccaccccagcccatgaagggctccgccactga 6750166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 38527243 - 38527172
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactga 71  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38527243 ataatcgttgatttttttatttttccgggtgggccgtggcccaccccagcccatgaagggctccgccactga 38527172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 22674829 - 22674899
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  22674829 ataatcgttgattttttaatttttccgggtgggccgtggtccaccccagcccatgaagggctccgccactg 22674899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 38763783 - 38763713
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  38763783 ataatcgttgattttttaatttttccgggtgggccgtggcccacctcagcccatgaagggctccgccactg 38763713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 34983345 - 34983277
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccac 68  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  34983345 ataatcgttgatttttcaatttttccgggtgggccgtggcccaccccagcccatgaagggctccgccac 34983277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 13616052 - 13616123
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactga 71  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||    
T  13616052 ataatcgttgattttttaatttttccgggtgggccgtggcccaccccagcccatgaaagactccgccactga 13616123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 23869732 - 23869662
Alignment:
Q  1 ataatcgttgattttttaattttccggg-tgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||    
T  23869732 ataatcgttgattttttaatttttcggggtgggccgtggcccaccccagcccatggagggctccgccactg 23869662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 28745581 - 28745653
Alignment:
Q  1 ataatcgttgattttttaattttcc---gggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||||||| |||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||    
T  28745581 ataatcgttaattttttaattttcccgggggtgggccgtggcccaccccagcccatgaagggctccgccactg 28745653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 44545818 - 44545889
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactga 71  Q
    ||||||||||||||||| ||||| |||||||| ||||||||||||||| |||||||||||||||||||||||    
T  44545818 ataatcgttgatttttttatttttccgggtggaccgtggcccaccccaacccatgaagggctccgccactga 44545889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 2249650 - 2249580
Alignment:
Q  1 ataatcgttgattttttaattttc-cgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    |||||| ||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||    
T  2249650 ataatcattgattttttaattttttcgggtgggtcgtggcccaccccagcccatgaagggctccgccactg 2249580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 36436271 - 36436341
Alignment:
Q  1 ataatcgttgattttttaattttcc-gggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||||||| |||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||    
T  36436271 ataatcgttaattttttaatttttttgggtgggccgtggcccaccccagcccatgaagggctccgccactg 36436341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 1115134 - 1115197
Alignment:
Q  8 ttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    |||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||    
T  1115134 ttgattttttaatttttccgagtggaccgtggcccaccccagcccatgaagggctccgccactg 1115197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 41699253 - 41699185
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccac 68  Q
    ||||||||||||||||||||||| |||| ||||||||| ||||||| |||||||| |||||||||||||    
T  41699253 ataatcgttgattttttaatttttccggatgggccgtgacccacccgagcccatggagggctccgccac 41699185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 1021164 - 1021229
Alignment:
Q  8 ttgattttttaattttcc--gggtggg-ccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    |||||||||||||||| |  ||||||| ||||||||||||||||||||||||||||||||||||||    
T  1021164 ttgattttttaatttttctcgggtggggccgtggcccaccccagcccatgaagggctccgccactg 1021229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 34494564 - 34494634
Alignment:
Q  1 ataatcgttgattttttaattttccggg-tgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||||||||||||||||||||| | || ||| ||||||||||||| ||||||||| ||||||||||||||    
T  34494564 ataatcgttgattttttaatttttctggatggaccgtggcccaccctagcccatgatgggctccgccactg 34494634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 42473610 - 42473566
Alignment:
Q  20 ttttccgggtgggccgtggcccaccccagcccatgaagggctccg 64  Q
    |||| |||||| |||||||||||||||||||||||||||||||||    
T  42473610 tttttcgggtgagccgtggcccaccccagcccatgaagggctccg 42473566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 7366208 - 7366150
Alignment:
Q  12 ttttttaattttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||||| |||| ||| |||||||||||||||| |||||||| || |||||||||||||    
T  7366208 ttttttattttttcggatgggccgtggcccacctcagcccataaaaggctccgccactg 7366150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 32099986 - 32099928
Alignment:
Q  12 ttttttaattttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||||| |||| ||||||||  ||||||||||| ||||||||||||||||| ||||||    
T  32099986 ttttttattttttcgggtgggttgtggcccaccctagcccatgaagggctccaccactg 32099928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 69
Target Start/End: Complemental strand, 12995007 - 12994975
Alignment:
Q  37 ggcccaccccagcccatgaagggctccgccact 69  Q
    |||||||||||||||||||||||||||||||||    
T  12995007 ggcccaccccagcccatgaagggctccgccact 12994975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 40897762 - 40897816
Alignment:
Q  12 ttttttaattttccgggtgggccgtggcccaccccagcccatgaagggctccgcc 66  Q
    ||||||| |||| |||||||| |||||||||||||| ||||| ||||||| ||||    
T  40897762 ttttttattttttcgggtgggtcgtggcccaccccaacccataaagggcttcgcc 40897816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 2076971 - 2076934
Alignment:
Q  30 gggccgtggcccaccccagcccatgaagggctccgcca 67  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  2076971 gggccgtggcccaccctagccaatgaagggctccgcca 2076934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 9e-24; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 2660927 - 2660999
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactgaa 72  Q
    ||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  2660927 ataatcgttgattttttaatttttccgggtgggtcgtggcccatcccagcccatgaagggctccgccactgaa 2660999  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 24130328 - 24130396
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccac 68  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  24130328 ataatcgttgattttttaatttttccgggtgggcagtggcccaccccagcccatgaagggctccgccac 24130396  T

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Target: chr6; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 24635559 - 24635630
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactga 71  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||    
T  24635559 ataatcgttgattttttaatttttccggatgggccgtggcccaccccagcccatgaagggcttcgccactga 24635630  T

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Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 12698564 - 12698493
Alignment:
Q  1 ataatcgttgattttttaa--ttttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||| |||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  12698564 ataattgttgattttttaaatttttccgggtcggccgtggcccaccccagcccatgaagggctccgccactg 12698493  T

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Target: chr6; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 9079144 - 9079214
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||||||||||||||||||||| |||| ||||| |||||||||||||| |||||||||||||||||||||    
T  9079144 ataatcgttgattttttaatttttccggatgggctgtggcccaccccagtccatgaagggctccgccactg 9079214  T

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Target: chr6; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 16461498 - 16461568
Alignment:
Q  1 ataatcgttgattttttaat-tttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||| |||||||||||    
T  16461498 ataatcgttgattttttaatatttccgggtgggccgtgacccaccccagtccatgaaggactccgccactg 16461568  T

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Target: chr6; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 12996346 - 12996284
Alignment:
Q  8 ttgattttttaattttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||||||||||||||||| || ||| ||||||||||||| ||||||||||||||||||||||    
T  12996346 ttgattttttaattttccgagtaggctgtggcccaccccaacccatgaagggctccgccactg 12996284  T

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Target: chr6; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 10290524 - 10290457
Alignment:
Q  4 atcgttgattttttaattt-tccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    |||||| |||||||||||| || ||||||||| |||||||||| ||||||||||||||||||||||||    
T  10290524 atcgttaattttttaatttctctgggtgggccatggcccaccctagcccatgaagggctccgccactg 10290457  T

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Target: chr6; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 13405452 - 13405523
Alignment:
Q  1 ataatcgttgattttttaattttc-cgggtgggccgtggcccaccccagcccatgaagggctccgccactga 71  Q
    ||||||||| |||||||||||||  |||||||| |||||||||||||| |||||||||||||||||| ||||    
T  13405452 ataatcgttaattttttaattttttcgggtgggtcgtggcccaccccaacccatgaagggctccgcctctga 13405523  T

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Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 8560495 - 8560426
Alignment:
Q  1 ataatcgttgattttttaattttc-cgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    |||||||||||||||||||||||  |||||||||||||||| |||||| ||| ||||||||||||||||||    
T  8560495 ataatcgttgattttttaattttttcgggtgggccgtggcc-accccaacccttgaagggctccgccactg 8560426  T

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Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 11450593 - 11450667
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccac----cccagcccatgaagggctccgccactg 70  Q
    |||||||||||| ||| |||||| ||||||||||||||||||||    |||||||||||||||||||||||||||    
T  11450593 ataatcgttgatatttaaatttttccgggtgggccgtggcccaccccacccagcccatgaagggctccgccactg 11450667  T

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Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 26468518 - 26468448
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    ||||| ||||||||||||||||| ||  |||| |||||||||| ||||||||||||| |||||||||||||    
T  26468518 ataatagttgattttttaatttttccaagtggaccgtggcccatcccagcccatgaaaggctccgccactg 26468448  T

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Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 2399421 - 2399465
Alignment:
Q  27 ggtgggccgtggcccaccccagcccatgaagggctccgccactga 71  Q
    ||||||| ||||||||||||| |||||||||||||||||| ||||    
T  2399421 ggtgggctgtggcccaccccaacccatgaagggctccgcccctga 2399465  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 31489890 - 31489832
Alignment:
Q  4 atcgttgattttttaattttccgggtgggccgtggcccaccccagcccatgaagggctc 62  Q
    |||||| |||||| |||||| |||||||| | |||||||||| |||| |||||||||||    
T  31489890 atcgttaatttttaaatttttcgggtgggtcttggcccaccctagcctatgaagggctc 31489832  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 69
Target Start/End: Complemental strand, 15469133 - 15469101
Alignment:
Q  37 ggcccaccccagcccatgaagggctccgccact 69  Q
    ||||| |||||||||||||||||||||||||||    
T  15469133 ggccctccccagcccatgaagggctccgccact 15469101  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 23259157 - 23259228
Alignment:
Q  1 ataatcgttgattttttaattttc--cgggtgggccgtggccca-----ccccagcccatgaagggctccgc 65  Q
    ||||| |||||||||||||||||   || |||||||||||||||     |||||||||||||||||||||||    
T  23259157 ataattgttgattttttaatttttttcgcgtgggccgtggcccaccccaccccagcccatgaagggctccgc 23259228  T

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Target: scaffold0014 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 65003 - 64932
Alignment:
Q  1 ataatcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgccactga 71  Q
    |||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  65003 ataagcgttgtttttttaatttttccgggtgggccgtggcccaccccagcccatgaagggctccgccactga 64932  T

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Target: scaffold0050 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 19112 - 19048
Alignment:
Q  4 atcgttgattttttaatttt-ccgggtgggccgtggcccaccccagcccatgaagggctccgcca 67  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19112 atcgttgatttttttatttttccgggtgggccgtggcccaccccagcccatgaagggctccgcca 19048  T

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Target: scaffold0131 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 11210 - 11166
Alignment:
Q  26 gggtgggccgtggcccaccccagcccatgaagggctccgccactg 70  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  11210 gggtgggccgtggcccaccccagcccatgaagggctccgccactg 11166  T

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Target: scaffold0003 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 303908 - 303979
Alignment:
Q  2 taatcgttgattttttaattttccgggtgggccgtggcccaccccagcccatgaagggctccgccactgaat 73  Q
    |||||||| |||||| | ||||||| |||||||||| ||||||| |||||||||||||||||||| ||||||    
T  303908 taatcgttaatttttaatttttccgagtgggccgtgacccaccctagcccatgaagggctccgcctctgaat 303979  T

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