View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21648_low_24 (Length: 344)

Name: NF21648_low_24
Description: NF21648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21648_low_24
NF21648_low_24
[»] chr4 (4 HSPs)
chr4 (222-300)||(17823410-17823488)
chr4 (135-208)||(17823546-17823621)
chr4 (128-199)||(7205228-7205300)
chr4 (14-50)||(17839314-17839350)
[»] chr7 (1 HSPs)
chr7 (128-200)||(24378498-24378571)
[»] chr1 (3 HSPs)
chr1 (123-196)||(28704918-28704992)
chr1 (123-208)||(32623833-32623922)
chr1 (128-185)||(6912782-6912840)
[»] scaffold0016 (1 HSPs)
scaffold0016 (128-208)||(78650-78730)
[»] chr8 (1 HSPs)
chr8 (128-199)||(41429343-41429415)


Alignment Details
Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 222 - 300
Target Start/End: Complemental strand, 17823488 - 17823410
Alignment:
Q  222 tctactcaattattaaataattcaattattttgattcggagagagtaatttctactatagtatgaagcaaaattaactt 300  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  17823488 tctactcaattattaaataattcaattattttgatttggagagagtaatttctactatagtatgaaccaaaattaactt 17823410  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 135 - 208
Target Start/End: Complemental strand, 17823621 - 17823546
Alignment:
Q  135 ttatttcttcaccaatatacccctatttttgt-acatattttt-cttgaatatgtaataaatactcttggcaacat 208  Q
    ||||||||||| |||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||    
T  17823621 ttatttcttcatcaatatacccctatttatgttacatattttttcttgaatatgtaataaatactcttggcaacat 17823546  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 199
Target Start/End: Original strand, 7205228 - 7205300
Alignment:
Q  128 acattaattatttcttcaccaatatacccctattt-ttgtacatatttttcttgaatatgtaataaatactct 199  Q
    |||||||||||||||| |||||||||||||||||| |  |||||||||||||  ||||||| |||||||||||    
T  7205228 acattaattatttctttaccaatatacccctatttatattacatatttttctacaatatgtgataaatactct 7205300  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 17839350 - 17839314
Alignment:
Q  14 gagatgaagagtgaaaacggtgagttttaagaggcac 50  Q
    ||||||||||||||| |||||||||||||||||||||    
T  17839350 gagatgaagagtgaagacggtgagttttaagaggcac 17839314  T

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Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 128 - 200
Target Start/End: Original strand, 24378498 - 24378571
Alignment:
Q  128 acattaattatttcttcaccaatatacccctatttttg-tacatatttttcttgaatatgtaataaatactctt 200  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||    
T  24378498 acattaattatttcttcaccaatatacccctatttatgttacatatttttctttaatatgtaataaatactctt 24378571  T

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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 123 - 196
Target Start/End: Complemental strand, 28704992 - 28704918
Alignment:
Q  123 aaagcacattaattatttcttcaccaatatacccctatttttg-tacatatttttcttgaatatgtaataaatac 196  Q
    |||| ||||||||||||||||||||||||||||||||||| || ||||||||||| || ||||||||||||||||    
T  28704992 aaagtacattaattatttcttcaccaatatacccctatttatgttacatatttttattcaatatgtaataaatac 28704918  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 208
Target Start/End: Original strand, 32623833 - 32623922
Alignment:
Q  123 aaagcacattaattatttcttcaccaatat---acccctatttttgt-acatatttttcttgaatatgtaataaatactcttggcaacat 208  Q
    |||| ||||||| |||||||||||||||||   ||| |||||| ||| ||||||||||||| ||||||||||||||||| |||| |||||    
T  32623833 aaagtacattaactatttcttcaccaatattatacctctatttatgttacatatttttcttcaatatgtaataaatacttttggaaacat 32623922  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 6912840 - 6912782
Alignment:
Q  128 acattaattatttcttcaccaatatacccctattt-ttgtacatatttttcttgaatat 185  Q
    ||||||||||||||||||||||||||||||||||| |  |||||||||||||| |||||    
T  6912840 acattaattatttcttcaccaatatacccctatttatattacatatttttcttcaatat 6912782  T

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Target: scaffold0016 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 208
Target Start/End: Complemental strand, 78730 - 78650
Alignment:
Q  128 acattaattatttcttcaccaatatacccctattt-ttgtacatatttttcttgaatatgtaataaatactcttggcaacat 208  Q
    ||||||||||||| ||||||||||||||| ||||| |  |||||| |||||||  ||||||||||||||||||||| |||||    
T  78730 acattaattatttattcaccaatatacccttatttatattacata-ttttctttgatatgtaataaatactcttggaaacat 78650  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 199
Target Start/End: Original strand, 41429343 - 41429415
Alignment:
Q  128 acattaattatttcttcaccaatatacccctatttttg-tacatatttttcttgaatatgtaataaatactct 199  Q
    |||||||||||||||| |||| |||| |||||||| || | |||||||||||  |||||  ||||||||||||    
T  41429343 acattaattatttctttaccattatatccctatttatgttgcatatttttctacaatatacaataaatactct 41429415  T

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