View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21648_low_26 (Length: 315)
Name: NF21648_low_26
Description: NF21648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21648_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 104; Significance: 8e-52; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 136 - 255
Target Start/End: Complemental strand, 39280385 - 39280266
Alignment:
| Q |
136 |
ctattttaacagattattatagtaaaaaatttacattatccaccaatcaatcacaacgataaatatgtagttgcatgattttttgacataaggtgtgtgt |
235 |
Q |
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| T |
39280385 |
ctattttgacagatcattatagtaaaaagtttacattatccaccaatcaatcacagcgataaatatgtagttgcatgattttttgacataaggtgtgtgt |
39280286 |
T |
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| Q |
236 |
ctaacaaaaggagttaagct |
255 |
Q |
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| T |
39280285 |
ctaacaaaaggagttaagct |
39280266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 39280219 - 39280165
Alignment:
| Q |
253 |
gctttttattagatttatcgcttaatatgtgtatgtagtataggtaggctagagc |
307 |
Q |
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| T |
39280219 |
gctttttattagatttatcgcttaatatgtgtatgtagtataggtaggctagagc |
39280165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 35 - 142
Target Start/End: Complemental strand, 39283056 - 39282941
Alignment:
| Q |
35 |
aaattttaattctccaacgaatagtttgatttaatttgtattttagt--------aatnnnnnnnntcttaaaagttgtgactacacctgatgttaaagg |
126 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
39283056 |
aaattttaattctccaacgaatagtttgatttaatttgtattttagtaaaaaaaaaaaaaaaatcttcttaaaagttgtgactacacctgatgttaaagg |
39282957 |
T |
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| Q |
127 |
atttcgactctatttt |
142 |
Q |
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| T |
39282956 |
atcccgactctatttt |
39282941 |
T |
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