View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21648_low_28 (Length: 311)
Name: NF21648_low_28
Description: NF21648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21648_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 8e-98; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 39047681 - 39047869
Alignment:
| Q |
16 |
tcactctctacaattatatatctattttgatttaataaacaaaattgacacatcaaatttcatatcttgtattatatatattgtgcagtatatacttgag |
115 |
Q |
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| T |
39047681 |
tcactctctacaattatatatctattttgatttaataaagaaaattgacacatcaaatttcatatcttgcattatatatattgtgcagtatatacttgag |
39047780 |
T |
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| Q |
116 |
accagtgtgtttccaagagagcacccatgcttgaaggagcttcgtgagttaacagaaaaccactcacagtaagattatactacctccaa |
204 |
Q |
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| T |
39047781 |
accagtgtgtttccaagagagcacccatgcttgaaggagcttcgtgagttaacagaaaaccactcacagtaagattatactacctccaa |
39047869 |
T |
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Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 96 - 195
Target Start/End: Original strand, 39235421 - 39235520
Alignment:
| Q |
96 |
ttgtgcagtatatacttgagaccagtgtgtttccaagagagcacccatgcttgaaggagcttcgtgagttaacagaaaaccactcacagtaagattatac |
195 |
Q |
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| T |
39235421 |
ttgtgcagtatatacttgacacaagtgtgtttccaagagaacacccttgcttgaaggagctccgtgagatgacagaaaaacaccctcggtaagatcatac |
39235520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 94 - 157
Target Start/End: Complemental strand, 39292605 - 39292542
Alignment:
| Q |
94 |
tattgtgcagtatatacttgagaccagtgtgtttccaagagagcacccatgcttgaaggagctt |
157 |
Q |
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| T |
39292605 |
tattgtgcagtatatacttgaaacaagcgtgtttccaagagaacacccatgcttgaaggagctt |
39292542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 96 - 174
Target Start/End: Original strand, 39053763 - 39053841
Alignment:
| Q |
96 |
ttgtgcagtatatacttgagaccagtgtgtttccaagagagcacccatgcttgaaggagcttcgtgagttaacagaaaa |
174 |
Q |
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| T |
39053763 |
ttgtgcagtatatacttgacacaagtgtgtttccaaatgaacacccttgcttgaaggagcttcgtgagatgacagaaaa |
39053841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 96 - 195
Target Start/End: Original strand, 7562764 - 7562863
Alignment:
| Q |
96 |
ttgtgcagtatatacttgagaccagtgtgtttccaagagagcacccatgcttgaaggagcttcgtgagttaacagaaaaccactcacagtaagattatac |
195 |
Q |
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| T |
7562764 |
ttgtgcagtatatacttgacacaagtgtgtttccaagagaacacccttgcttgaaggagctccgtgagatgacagaaaaacaccctcggtaagatcatac |
7562863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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