View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21648_low_31 (Length: 288)

Name: NF21648_low_31
Description: NF21648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21648_low_31
NF21648_low_31
[»] chr1 (8 HSPs)
chr1 (1-272)||(28496019-28496290)
chr1 (5-186)||(36989286-36989467)
chr1 (1-185)||(12804511-12804695)
chr1 (52-185)||(42287110-42287243)
chr1 (1-185)||(4160319-4160503)
chr1 (1-185)||(12774879-12775063)
chr1 (45-187)||(31644056-31644198)
chr1 (1-185)||(50788819-50789003)
[»] chr7 (2 HSPs)
chr7 (16-185)||(40749347-40749516)
chr7 (58-167)||(44150818-44150927)
[»] chr8 (2 HSPs)
chr8 (49-185)||(5788723-5788859)
chr8 (31-125)||(33186707-33186801)
[»] chr2 (4 HSPs)
chr2 (19-188)||(42898258-42898427)
chr2 (19-187)||(40040749-40040917)
chr2 (31-185)||(38895857-38896011)
chr2 (25-71)||(5435530-5435576)
[»] chr4 (2 HSPs)
chr4 (1-185)||(30518148-30518332)
chr4 (45-187)||(22085504-22085646)
[»] chr3 (1 HSPs)
chr3 (1-98)||(52248442-52248539)


Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-150; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 28496290 - 28496019
Alignment:
Q  1 ccttcaagagcacttggtgacctcacaggtataaaaaagcactttagtagaaagcacggtgagaagaagtggaaatgtgaaaaatgttccaaaaaatatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28496290 ccttcaagagcacttggtgacctcacaggtataaaaaagcactttagtagaaagcacggtgagaagaagtggaaatgtgaaaaatgttccaaaaaatatg 28496191  T
Q  101 cagtccaatctgattggaaagctcatacaaaaacatgtggtacaagagaatacaaatgtgactgtggcaccctcttctcaaggtataatatttaatatac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28496190 cagtccaatctgattggaaagctcatacaaaaacatgtggtacaagagaatacaaatgtgactgtggcaccctcttctcaaggtataatatttaatatac 28496091  T
Q  201 tctccttttattcaccaatcttttgtttctgtgataaatcaataaatgcttctataatttattcatattcat 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28496090 tctccttttattcaccaatcttttgtttctgtgataaatcaataaatgcttctttaatttattcatattcat 28496019  T

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Target: chr1; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 5 - 186
Target Start/End: Original strand, 36989286 - 36989467
Alignment:
Q  5 caagagcacttggtgacctcacaggtataaaaaagcactttagtagaaagcacggtgagaagaagtggaaatgtgaaaaatgttccaaaaaatatgcagt 104  Q
    |||||||||||||||| || || || || |||||||||||| |||||||||| |||||||| |||||||||||||| || ||||| || |||||||| ||    
T  36989286 caagagcacttggtgatcttactggaattaaaaagcacttttgtagaaagcatggtgagaaaaagtggaaatgtgataagtgttctaagaaatatgctgt 36989385  T
Q  105 ccaatctgattggaaagctcatacaaaaacatgtggtacaagagaatacaaatgtgactgtggcaccctcttctcaaggtat 186  Q
     ||||||||||||||||||||| | |||| |||||||||||| |||||||||||||||||||| ||| |||| || ||||||    
T  36989386 tcaatctgattggaaagctcattccaaaatatgtggtacaagggaatacaaatgtgactgtggaaccatcttttccaggtat 36989467  T

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Target: chr1; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 12804695 - 12804511
Alignment:
Q  1 ccttcaagagcacttggtgacctcacaggtataaaaaagcactttagtagaaagcacggtgagaagaagtggaaatgtgaaaaatgttccaaaaaatatg 100  Q
    |||||||| || |||||||||||||| || || || |||||||||  ||||||||| |||||||| ||||||||||||||||| ||||| || |||||||    
T  12804695 ccttcaagggctcttggtgacctcactggaattaagaagcacttttctagaaagcatggtgagaaaaagtggaaatgtgaaaagtgttctaagaaatatg 12804596  T
Q  101 cagtccaatctgattggaaagctcatacaaaaacatgtggtacaagagaatacaaatgtgactgtggcaccctcttctcaaggta 185  Q
    | || ||||||||||||||||||||| | || || |||||||| || || || | ||||||||||||||| ||||||||||||||    
T  12804595 ctgttcaatctgattggaaagctcattctaagacttgtggtactagggagtatagatgtgactgtggcactctcttctcaaggta 12804511  T

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Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 52 - 185
Target Start/End: Original strand, 42287110 - 42287243
Alignment:
Q  52 aagcacggtgagaagaagtggaaatgtgaaaaatgttccaaaaaatatgcagtccaatctgattggaaagctcatacaaaaacatgtggtacaagagaat 151  Q
    ||||||||||||||||||||||||||||||||||| || || |||||||| || |||||||| |||||||| ||| | || || |||||||| |||||||    
T  42287110 aagcacggtgagaagaagtggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgactggaaagcacattctaagacttgtggtactagagaat 42287209  T
Q  152 acaaatgtgactgtggcaccctcttctcaaggta 185  Q
    | | |||||| ||||||||||||||||| |||||    
T  42287210 atagatgtgattgtggcaccctcttctctaggta 42287243  T

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Target: chr1; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 4160319 - 4160503
Alignment:
Q  1 ccttcaagagcacttggtgacctcacaggtataaaaaagcactttagtagaaagcacggtgagaagaagtggaaatgtgaaaaatgttccaaaaaatatg 100  Q
    |||||||| |||||||||||||| || || || || |||||||||   || ||||||||||||||||||||||| ||||| |||||||| |||  |||||    
T  4160319 ccttcaagggcacttggtgacctaactggaatcaagaagcactttttcaggaagcacggtgagaagaagtggaagtgtgagaaatgttctaaacgatatg 4160418  T
Q  101 cagtccaatctgattggaaagctcatacaaaaacatgtggtacaagagaatacaaatgtgactgtggcaccctcttctcaaggta 185  Q
    |||| || || ||||||||||||||| | ||||  ||||| || | ||| || || ||||||||||| |||||||||||||||||    
T  4160419 cagttcagtcggattggaaagctcattccaaaatttgtggcactaaagagtataagtgtgactgtggaaccctcttctcaaggta 4160503  T

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Target: chr1; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 12774879 - 12775063
Alignment:
Q  1 ccttcaagagcacttggtgacctcacaggtataaaaaagcactttagtagaaagcacggtgagaagaagtggaaatgtgaaaaatgttccaaaaaatatg 100  Q
    |||||||| || |||||||||||||| || || || || |||| |  ||||||||| |||||||| || ||||| |||||||| ||||| || || ||||    
T  12774879 ccttcaagggctcttggtgacctcactggaattaagaaacactattttagaaagcatggtgagaaaaaatggaagtgtgaaaagtgttctaagaagtatg 12774978  T
Q  101 cagtccaatctgattggaaagctcatacaaaaacatgtggtacaagagaatacaaatgtgactgtggcaccctcttctcaaggta 185  Q
    | || ||||||||||||||||||||| | ||||| |||||||| |  || || | ||||||||||||||| |||||||| |||||    
T  12774979 ctgttcaatctgattggaaagctcattctaaaacttgtggtactaaggagtatagatgtgactgtggcactctcttctccaggta 12775063  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 187
Target Start/End: Complemental strand, 31644198 - 31644056
Alignment:
Q  45 tagtagaaagcacggtgagaagaagtggaaatgtgaaaaatgttccaaaaaatatgcagtccaatctgattggaaagctcatacaaaaacatgtggtaca 144  Q
    ||||||||| || |||||||| || ||||||||||| || || || || |  ||||| || || |||||||||||||||||  | ||||| ||||||||     
T  31644198 tagtagaaaacatggtgagaaaaaatggaaatgtgataagtgctcaaagatctatgctgttcattctgattggaaagctcactctaaaacctgtggtact 31644099  T
Q  145 agagaatacaaatgtgactgtggcaccctcttctcaaggtata 187  Q
     ||||||| |||||||| ||||| ||||| || || |||||||    
T  31644098 cgagaatataaatgtgattgtggtacccttttttccaggtata 31644056  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 50789003 - 50788819
Alignment:
Q  1 ccttcaagagcacttggtgacctcacaggtataaaaaagcactttagtagaaagcacggtgagaagaagtggaaatgtgaaaaatgttccaaaaaatatg 100  Q
    |||||||| ||||||||||||||||| || || || || ||||    | | || || ||||||||||| ||||| ||||| || || || || || ||||    
T  50789003 ccttcaagggcacttggtgacctcactgggattaagaaacactactctcgcaaacatggtgagaagaaatggaagtgtgataagtgctctaagaagtatg 50788904  T
Q  101 cagtccaatctgattggaaagctcatacaaaaacatgtggtacaagagaatacaaatgtgactgtggcaccctcttctcaaggta 185  Q
    | || |||||||||||||| || ||| | || || ||||| || |||||||| |  |||||||||||||| |||||||| |||||    
T  50788903 ctgttcaatctgattggaaggcacattctaagacttgtggcaccagagaatataggtgtgactgtggcactctcttctccaggta 50788819  T

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Target: chr7 (Bit Score: 82; Significance: 9e-39; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 16 - 185
Target Start/End: Original strand, 40749347 - 40749516
Alignment:
Q  16 ggtgacctcacaggtataaaaaagcactttagtagaaagcacggtgagaagaagtggaaatgtgaaaaatgttccaaaaaatatgcagtccaatctgatt 115  Q
    ||||||||||| || ||||| || || ||||||||||| || || |||||||| ||||| ||||| || |||||||| ||||||||||||||||||||||    
T  40749347 ggtgacctcaccggaataaagaaacattttagtagaaaacatggcgagaagaaatggaagtgtgataagtgttccaagaaatatgcagtccaatctgatt 40749446  T
Q  116 ggaaagctcatacaaaaacatgtggtacaagagaatacaaatgtgactgtggcaccctcttctcaaggta 185  Q
    |||||||||| || ||||| |||||||| |||||||| || ||||| ||||| || ||||||||||||||    
T  40749447 ggaaagctcacactaaaacttgtggtactagagaatataagtgtgattgtggtacactcttctcaaggta 40749516  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 167
Target Start/End: Complemental strand, 44150927 - 44150818
Alignment:
Q  58 ggtgagaagaagtggaaatgtgaaaaatgttccaaaaaatatgcagtccaatctgattggaaagctcatacaaaaacatgtggtacaagagaatacaaat 157  Q
    ||||||||||| ||||||||||| || || || |||| |||||| || ||||| |||||||| |||||    ||||| |||||||| || ||||||||||    
T  44150927 ggtgagaagaaatggaaatgtgacaagtgctctaaaagatatgctgttcaatcagattggaaggctcaccagaaaacttgtggtactagggaatacaaat 44150828  T
Q  158 gtgactgtgg 167  Q
    |||| |||||    
T  44150827 gtgattgtgg 44150818  T

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Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 49 - 185
Target Start/End: Complemental strand, 5788859 - 5788723
Alignment:
Q  49 agaaagcacggtgagaagaagtggaaatgtgaaaaatgttccaaaaaatatgcagtccaatctgattggaaagctcatacaaaaacatgtggtacaagag 148  Q
    |||||||| |||||||||||||||||||||||||| ||||| || |||||||| || ||||||||||||||||||||| | ||||| ||||| || ||||    
T  5788859 agaaagcatggtgagaagaagtggaaatgtgaaaagtgttcaaagaaatatgctgttcaatctgattggaaagctcattccaaaacttgtggcactagag 5788760  T
Q  149 aatacaaatgtgactgtggcaccctcttctcaaggta 185  Q
    |||| | |||||||||||| |||||||||||||||||    
T  5788759 aatatagatgtgactgtggaaccctcttctcaaggta 5788723  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 31 - 125
Target Start/End: Original strand, 33186707 - 33186801
Alignment:
Q  31 ataaaaaagcactttagtagaaagcacggtgagaagaagtggaaatgtgaaaaatgttccaaaaaatatgcagtccaatctgattggaaagctca 125  Q
    ||||||||||||||| ||||||| || |||||||| |||||||||||||| |||||||| || |||||||| || ||||||||||||||||||||    
T  33186707 ataaaaaagcacttttgtagaaaacatggtgagaaaaagtggaaatgtgagaaatgttctaagaaatatgctgttcaatctgattggaaagctca 33186801  T

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Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 42898258 - 42898427
Alignment:
Q  19 gacctcacaggtataaaaaagcactttagtagaaagcacggtgagaagaagtggaaatgtgaaaaatgttccaaaaaatatgcagtccaatctgattgga 118  Q
    ||||| || ||||| || ||||||||  | |||||||||||||||||||||||||||||||| || || || || || |||||||| ||||| || ||||    
T  42898258 gacctaactggtatcaagaagcacttctgcagaaagcacggtgagaagaagtggaaatgtgacaagtgctctaagaagtatgcagttcaatcagactgga 42898357  T
Q  119 aagctcatacaaaaacatgtggtacaagagaatacaaatgtgactgtggcaccctcttctcaaggtataa 188  Q
    |||||||  | ||||| ||||| ||||||||||||| |||||||||||| ||||||||||||||||||||    
T  42898358 aagctcactccaaaacctgtggcacaagagaatacagatgtgactgtggaaccctcttctcaaggtataa 42898427  T

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Target: chr2; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 40040749 - 40040917
Alignment:
Q  19 gacctcacaggtataaaaaagcactttagtagaaagcacggtgagaagaagtggaaatgtgaaaaatgttccaaaaaatatgcagtccaatctgattgga 118  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| || ||||||||||| |||||||||||||    
T  40040749 gacctgacagggataaaaaagcactttagtagaaagcacggtgagaagaagtggaagtgtgataagtgttctaagaaatatgcagttcaatctgattgga 40040848  T
Q  119 aagctcatacaaaaacatgtggtacaagagaatacaaatgtgactgtggcaccctcttctcaaggtata 187  Q
    | |||||||  || |  ||||| || | ||| |||| |||||| |||||||| || ||||| |||||||    
T  40040849 aggctcatagtaagatttgtggcactaaagagtacagatgtgattgtggcacactattctccaggtata 40040917  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 185
Target Start/End: Complemental strand, 38896011 - 38895857
Alignment:
Q  31 ataaaaaagcactttagtagaaagcacggtgagaagaagtggaaatgtgaaaaatgttccaaaaaatatgcagtccaatctgattggaaagctcatacaa 130  Q
    ||||| ||||||||| |||| || |||||||||||||||||||| ||||| || || || |||   ||||| || ||||| ||||||||||| ||  |||    
T  38896011 ataaagaagcacttttgtaggaaacacggtgagaagaagtggaagtgtgagaagtgctcaaaattttatgctgttcaatcggattggaaagcacactcaa 38895912  T
Q  131 aaacatgtggtacaagagaatacaaatgtgactgtggcaccctcttctcaaggta 185  Q
    | || |||||||| ||||||||||||||||| ||||||||  |||| ||||||||    
T  38895911 agacttgtggtactagagaatacaaatgtgattgtggcactatcttttcaaggta 38895857  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 5435576 - 5435530
Alignment:
Q  25 acaggtataaaaaagcactttagtagaaagcacggtgagaagaagtg 71  Q
    ||||| ||||| ||||||||| |||| ||||||||||||||||||||    
T  5435576 acagggataaagaagcacttttgtaggaagcacggtgagaagaagtg 5435530  T

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Target: chr4 (Bit Score: 77; Significance: 9e-36; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 30518332 - 30518148
Alignment:
Q  1 ccttcaagagcacttggtgacctcacaggtataaaaaagcactttagtagaaagcacggtgagaagaagtggaaatgtgaaaaatgttccaaaaaatatg 100  Q
    |||||||| |||||||||||| | || || ||||||||||||||| |||||||||| ||||| ||||||||||| ||||| || || || |||   ||||    
T  30518332 ccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaacgttatg 30518233  T
Q  101 cagtccaatctgattggaaagctcatacaaaaacatgtggtacaagagaatacaaatgtgactgtggcaccctcttctcaaggta 185  Q
    | || || || ||||||||||||||  |||||||||||||||| ||||||||||||||||||||||| ||  |||| ||||||||    
T  30518232 ctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtgactgtggaactatcttttcaaggta 30518148  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 45 - 187
Target Start/End: Complemental strand, 22085646 - 22085504
Alignment:
Q  45 tagtagaaagcacggtgagaagaagtggaaatgtgaaaaatgttccaaaaaatatgcagtccaatctgattggaaagctcatacaaaaacatgtggtaca 144  Q
    ||||||||| || ||||||||||||||||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||||  || |  ||||| ||     
T  22085646 tagtagaaaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaact 22085547  T
Q  145 agagaatacaaatgtgactgtggcaccctcttctcaaggtata 187  Q
    ||||| ||||||||||| ||||||||  | ||||| |||||||    
T  22085546 agagagtacaaatgtgattgtggcacaattttctccaggtata 22085504  T

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Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 52248539 - 52248442
Alignment:
Q  1 ccttcaagagcacttggtgacctcacaggtataaaaaagcactttagtagaaagcacggtgagaagaagtggaaatgtgaaaaatgttccaaaaaata 98  Q
    |||||||||||||| ||||||||||||||  | |||||||||||| |||||||||| ||||||||||| ||||||||||||   ||||| ||||||||    
T  52248539 ccttcaagagcactcggtgacctcacaggagtgaaaaagcacttttgtagaaagcatggtgagaagaaatggaaatgtgaacgttgttctaaaaaata 52248442  T

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