View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21648_low_34 (Length: 267)
Name: NF21648_low_34
Description: NF21648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21648_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 12627601 - 12627842
Alignment:
| Q |
18 |
catgatggtattactctggaagagaatcatcttgatgtagaacaagaaaaccagtttgttggagtggaaaatacagatgactcgtgggagatggacaacg |
117 |
Q |
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| T |
12627601 |
catgatggtattactctggaagagaatcatcttgatgtggaacaagaaaaccagtttgttggagtggaaaatacagatgactcgtgggagatggacaacg |
12627700 |
T |
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| Q |
118 |
gaacttatgatgagttgctcaaaaagtttaatgaaaaggaggaagagctaagaatttccaattataaacttcaactttcaaaacaagaaactataaagtt |
217 |
Q |
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| T |
12627701 |
gaacttatgatgagttgcttaaaaagtttaatgaaaaggaggaagagctaagaatttccaattttaaacttcaactttcaaaacaagaaactataaagtt |
12627800 |
T |
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| Q |
218 |
gaaggttgaaattgagaatagtgagggtgagcttgatgatgt |
259 |
Q |
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| T |
12627801 |
gaaggttgaaattgagaatagtgagggtgagcttgataatgt |
12627842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 47 - 254
Target Start/End: Original strand, 12621746 - 12621959
Alignment:
| Q |
47 |
tcttgatgtagaacaagaaaaccagtttgttggagtggaaaatacagatgac------tcgtgggagatggacaacggaacttatgatgagttgctcaaa |
140 |
Q |
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| T |
12621746 |
tcttgatatggaacaagaaaaccagtttgttggggtggaaaatacagatgataatttatcatgggagatggacaataaaagttatgatcaattgctcaaa |
12621845 |
T |
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| Q |
141 |
aagtttaatgaaaaggaggaagagctaagaatttccaattataaacttcaactttcaaaacaagaaactataaagttgaaggttgaaattgagaatagtg |
240 |
Q |
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| T |
12621846 |
aagttcaaagaaaatgaggaagagctaagagtttctaattttaaacttcagctttcggaacaagagattataaagttgaaagttcaagctgagaatagca |
12621945 |
T |
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| Q |
241 |
agggtgagcttgat |
254 |
Q |
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| T |
12621946 |
agggtcagcttgat |
12621959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 64 - 245
Target Start/End: Original strand, 42842993 - 42843177
Alignment:
| Q |
64 |
aaaaccagtttgttggagtggaaaatacagatgact---cgtgggagatggacaacggaacttatgatgagttgctcaaaaagtttaatgaaaaggagga |
160 |
Q |
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|||| ||||||||||| |||||||| |||||||| | |||||||||| ||||| ||| ||||||| | |||||||||||||| | ||||||||||| |
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| T |
42842993 |
aaaatcagtttgttggggtggaaaacacagatgatttatcgtgggagatagacaatagaagttatgataatttgctcaaaaagttcatggaaaaggagga |
42843092 |
T |
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| Q |
161 |
agagctaagaatttccaattataaacttcaactttcaaaacaagaaactataaagttgaaggttgaaattgagaatagtgagggt |
245 |
Q |
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| T |
42843093 |
agagctaagggttaccaatttaaagcttcagctttcggaagaagagaatataaagttgaaggttcaagttgagagtagtgagggt |
42843177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 196
Target Start/End: Original strand, 42819112 - 42819207
Alignment:
| Q |
101 |
gtgggagatggacaacggaacttatgatgagttgctcaaaaagtttaatgaaaaggaggaagagctaagaatttccaattataaacttcaactttc |
196 |
Q |
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| T |
42819112 |
gtgggagattgacaatagaagttatgataagttgctcaaaaagtgcattgagaacgaggaagagctaagagttaccaatttaaagcttcaactttc |
42819207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 245
Target Start/End: Original strand, 42834315 - 42834452
Alignment:
| Q |
108 |
atggacaacggaacttatgatgagttgctcaaaaagtttaatgaaaaggaggaagagctaagaatttccaattataaacttcaactttcaaaacaagaaa |
207 |
Q |
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| T |
42834315 |
atggacaatagaagttatgatgatttgatcaaaaaaattattggaacggaggaagagctaagggttaccaattcaaagcttcgactttcagaagaagaga |
42834414 |
T |
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| Q |
208 |
ctataaagttgaaggttgaaattgagaatagtgagggt |
245 |
Q |
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| T |
42834415 |
atataaagttgaaggtccaagttgggaatggtgagggt |
42834452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 254
Target Start/End: Complemental strand, 30924841 - 30924709
Alignment:
| Q |
122 |
ttatgatgagttgctcaaaaagtttaatgaaaaggaggaagagctaagaatttccaattataaacttcaactttcaaaacaagaaactataaagttgaag |
221 |
Q |
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||||||||| ||||| || ||||| | | |||| |||||||||||| || ||||||||| |||||| | |||||| || |||| | ||| ||||||||| |
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| T |
30924841 |
ttatgatgaattgctgaagaagttcattaaaaacgaggaagagctacgagtttccaatttgaaacttaagctttcagaagaagagattatcaagttgaag |
30924742 |
T |
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| Q |
222 |
gttgaaattgagaatagtgagggtgagcttgat |
254 |
Q |
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| T |
30924741 |
aatcaaaatgagaaaagtgagggtcaacttgat |
30924709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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