View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21648_low_36 (Length: 257)
Name: NF21648_low_36
Description: NF21648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21648_low_36 |
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Alignment Details
Target: chr6 (Bit Score: 108; Significance: 2e-54; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 12848013 - 12848176
Alignment:
| Q |
1 |
tttgtgtctctatttgtctgtgttatctttcatttggctttttaatatctttctatcactcatctgtatataatacaagttcacacgtatctaccacctg |
100 |
Q |
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| T |
12848013 |
tttgtgtctctatttgtctgtgttatttttcatttggctttctaatatctttctatcactcatctatatataatacaagttcacacatatct---acctg |
12848109 |
T |
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| Q |
101 |
tacggttgaagtggttatgatatgtaannnnnnnatacatcatttgtgatatcattttagtcaaatca |
168 |
Q |
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| T |
12848110 |
tacggttgaagtggttatgatatgtaa-ggggggatacatcctttgtgatatcattttagtcaaatca |
12848176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 39 - 168
Target Start/End: Complemental strand, 12100252 - 12100127
Alignment:
| Q |
39 |
tttttaatatctttctatcactcatctgtatataatacaagttcacacgtatctaccacctgtacggttgaagtggttatgatatgtaannnnnnnatac |
138 |
Q |
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| T |
12100252 |
tttttaatatctttctatcactcatctatatataatacaagttcatacgtatct---acctgtacggttgaagtggttatgatatgtaa-ggggggatat |
12100157 |
T |
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| Q |
139 |
atcatttgtgatatcattttagtcaaatca |
168 |
Q |
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| T |
12100156 |
atcatttgtgatatcattttagtcaaatca |
12100127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 21 - 168
Target Start/End: Original strand, 12871674 - 12871816
Alignment:
| Q |
21 |
tgttatctttcatttggctttttaatatctttctatcactcatctgtatataatacaagttcacacgtatctaccacctgtacggttgaagtggttatga |
120 |
Q |
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| T |
12871674 |
tgttatcattcatttggctttcaaatatctttctatcacccgtctgtatataatacaagttcacacgtatct---gcctgtatggttgaagtggctatga |
12871770 |
T |
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| Q |
121 |
tatgtaannnnnnnatacatcatttgtgatatcattttagtcaaatca |
168 |
Q |
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| T |
12871771 |
tatgtaagggggt--tacatcctttgtgatatcattttagtcaaatca |
12871816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 166
Target Start/End: Complemental strand, 11799540 - 11799395
Alignment:
| Q |
7 |
tctctatttgtctgtgttatctttcatttggctttttaatatctttctatcactcatctgtatataatacaagttcacacgtatctaccacctgtacggt |
106 |
Q |
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| T |
11799540 |
tctctatttgcccatgttatctttcatttggatttttaatatctttctatcactcatcaatatataatacaggttcacacgtat-------------ggt |
11799454 |
T |
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| Q |
107 |
tgaagtggttatgatatgtaannnnnnnatacatcatttgtgatatcattttagtcaaat |
166 |
Q |
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| T |
11799453 |
tgaagtggttatgatatgtaa-ggggtgatacatcctttgtgatatcattttagtcaaat |
11799395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 12878934 - 12878999
Alignment:
| Q |
7 |
tctctatttgtctgtgttatctttcatttggctttttaatatctttctatcactcatctgtatata |
72 |
Q |
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| T |
12878934 |
tctctatttgtctatgttatctttcatttggattttttatatctttctatcactcatctatatata |
12878999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 166
Target Start/End: Original strand, 18562800 - 18562942
Alignment:
| Q |
21 |
tgttatctttcatttggctttttaatatctttctatcactcatctgtatataatacaagttcacacgtatctaccacctgtacggttgaagtggttatga |
120 |
Q |
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|||||| ||||||||| |||||||||||||| ||| || |||||| ||||||||||| ||||| |||||| || | ||||| |||||||||||| |
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| T |
18562800 |
tgttatgtttcatttgactttttaatatcttcctaccagtcatctatatataatacataatcacatgtatct---actttcacggtggaagtggttatgc |
18562896 |
T |
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| Q |
121 |
tatgtaannnnnnnatacatcatttgtgatatcattttagtcaaat |
166 |
Q |
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| T |
18562897 |
tatgtaagggtaggataaatcatttgtgatttcattttactcaaat |
18562942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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