View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21648_low_39 (Length: 243)
Name: NF21648_low_39
Description: NF21648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21648_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 9173380 - 9173159
Alignment:
| Q |
7 |
agcagcacagacacatataccggatatgacattgacacatagaaaccaaacgtaactacatgtgcctatgtctgacacagatacgtgtcaggcacatgaa |
106 |
Q |
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| T |
9173380 |
agcaacacggacacatataccggatatgacattgacacatagaaaccaaacgtaactacatgcgcctatgtctggcacagatatgtgtcaggcacatgaa |
9173281 |
T |
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| Q |
107 |
cggcaccctaaacaataatatatgaagcagcaatacagataagtataccggatatgacactgacacgtagataccaaaggtaactacatgtgtatgtgtc |
206 |
Q |
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| T |
9173280 |
cggcaccctaaacaataatatatgaagcagcaatacagataagtataccggatatgacactgacacgtagataccaaaggtaactacatgtgtatgtgtc |
9173181 |
T |
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| Q |
207 |
tgacaccaatatgtgtcagaca |
228 |
Q |
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| T |
9173180 |
taacaccaatatgtgtcagaca |
9173159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 15 - 228
Target Start/End: Original strand, 8652900 - 8653111
Alignment:
| Q |
15 |
agacacatataccggatatgacattgacacatagaaaccaaacgtaactacatgtgcctatgtctgacacagatacgtgtcaggcacatgaacggcaccc |
114 |
Q |
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| T |
8652900 |
agacacatataccggatatgacactgacacatagaaaccaaacgtaactacatgtgcttgtgtctgacacaaatacgtgtcaggcaccggaacggcatcc |
8652999 |
T |
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| Q |
115 |
taaacaataatatatgaagcagcaatacagataagtataccggatatgacactgacacgtagataccaaaggtaactacatgtgtatgtgtctgacacca |
214 |
Q |
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| T |
8653000 |
tacacaataatctatgaagcagcaatacagatacatatactggatatgacactgacacatagataccaaaggtaactaca--tgtatgtgtctgacacca |
8653097 |
T |
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| Q |
215 |
atatgtgtcagaca |
228 |
Q |
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||| ||||||||| |
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| T |
8653098 |
atacatgtcagaca |
8653111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 121 - 225
Target Start/End: Original strand, 8652878 - 8652982
Alignment:
| Q |
121 |
ataatatatgaagcagcaatacagataagtataccggatatgacactgacacgtagataccaaaggtaactacatgtgtatgtgtctgacaccaatatgt |
220 |
Q |
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| T |
8652878 |
ataatctatgaagcagcaacaaagacacatataccggatatgacactgacacatagaaaccaaacgtaactacatgtgcttgtgtctgacacaaatacgt |
8652977 |
T |
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| Q |
221 |
gtcag |
225 |
Q |
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||||| |
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| T |
8652978 |
gtcag |
8652982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 8653026 - 8653082
Alignment:
| Q |
13 |
acagacacatataccggatatgacattgacacatagaaaccaaacgtaactacatgt |
69 |
Q |
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| T |
8653026 |
acagatacatatactggatatgacactgacacatagataccaaaggtaactacatgt |
8653082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 225
Target Start/End: Complemental strand, 9173394 - 9173290
Alignment:
| Q |
121 |
ataatatatgaagcagcaatacagataagtataccggatatgacactgacacgtagataccaaaggtaactacatgtgtatgtgtctgacaccaatatgt |
220 |
Q |
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| T |
9173394 |
ataatctatgaagcagcaacacggacacatataccggatatgacattgacacatagaaaccaaacgtaactacatgcgcctatgtctggcacagatatgt |
9173295 |
T |
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| Q |
221 |
gtcag |
225 |
Q |
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||||| |
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| T |
9173294 |
gtcag |
9173290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 225
Target Start/End: Complemental strand, 9173237 - 9173045
Alignment:
| Q |
22 |
tataccggatatgacattgacacatagaaaccaaacgtaactacatgtgcctatgtctgacacagatacgtgtcaggcacatgaacggcaccctaaacaa |
121 |
Q |
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|||||||||||||||| |||||| |||| |||||| ||||||||||||| | ||||| |||| ||| ||||||| ||| || | |||| |
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| T |
9173237 |
tataccggatatgacactgacacgtagataccaaaggtaactacatgtgtatgtgtctaacaccaatatgtgtcagacac-----------ccaacacaa |
9173149 |
T |
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| Q |
122 |
taatatatgaagcagcaatacagataagtataccggatatgacactgacacgtagataccaaaggtaactacatgtgtatgtgtctgacaccaatatgtg |
221 |
Q |
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|||| || ||||||||||||||| | | | |||||| ||||| ||| | ||||||||||| |||||||| ||||| ||||||| |||||| | |||| |
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| T |
9173148 |
taatctacaaagcagcaatacagaaacatgcatcggatacgacaccgacgcatagataccaaacgtaactacgtgtgtttgtgtctaacaccattgtgtg |
9173049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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